Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 3.9e-105 384.8 191 100.0
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 9.9e-77 290.4 192 75.0
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 2.4e-54 216.1 187 57.8
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 4.0e-54 215.3 187 58.8
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 1.2e-53 213.8 188 56.4
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 1.2e-53 213.8 190 57.9
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 1.5e-53 213.4 186 59.7
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 2.0e-53 213.0 189 57.7
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 2.0e-53 213.0 187 56.7
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 2.0e-53 213.0 190 58.9
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 2.6e-53 212.6 189 55.6
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 5.8e-53 211.5 190 56.3
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 1.0e-52 210.7 193 52.3
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 1.3e-52 210.3 189 56.1
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 1.7e-52 209.9 191 58.1
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 1.7e-52 209.9 191 56.0
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 2.2e-52 209.5 190 57.4
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 2.2e-52 209.5 190 55.8
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 2.2e-52 209.5 189 56.6
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 3.8e-52 208.8 185 56.8
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 3.8e-52 208.8 191 55.5
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 3.8e-52 208.8 192 55.2
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 3.8e-52 208.8 185 58.4
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 4.9e-52 208.4 189 55.6
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 4.9e-52 208.4 186 58.1
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 6.5e-52 208.0 185 56.8
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 6.5e-52 208.0 185 56.8
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 8.4e-52 207.6 185 58.4
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 8.4e-52 207.6 189 55.6
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 1.1e-51 207.2 189 55.6
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 1.1e-51 207.2 190 55.8
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 1.1e-51 207.2 186 57.0
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 1.4e-51 206.8 189 56.1
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 1.4e-51 206.8 189 55.6
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 1.4e-51 206.8 191 55.0
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 1.9e-51 206.5 189 55.6
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 1.9e-51 206.5 185 55.1
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 1.9e-51 206.5 191 57.1
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 1.9e-51 206.5 189 56.1
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 1.9e-51 206.5 189 56.1
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 1.9e-51 206.5 190 55.3
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 2.5e-51 206.1 189 55.0
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 2.5e-51 206.1 191 56.5
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 3.2e-51 205.7 189 55.6
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 3.2e-51 205.7 189 55.6
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 3.2e-51 205.7 185 55.1
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 3.2e-51 205.7 185 55.7
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 4.2e-51 205.3 189 56.6
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 4.2e-51 205.3 189 56.1
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 4.2e-51 205.3 189 55.6
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 4.2e-51 205.3 189 57.1
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 4.2e-51 205.3 185 57.8
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 5.5e-51 204.9 186 57.0
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 5.5e-51 204.9 189 55.0
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 5.5e-51 204.9 185 56.2
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 5.5e-51 204.9 189 55.0
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 5.5e-51 204.9 185 56.8
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 5.5e-51 204.9 190 55.8
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 7.1e-51 204.5 189 57.1
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 7.1e-51 204.5 185 56.8
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 7.1e-51 204.5 185 56.2
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 9.3e-51 204.1 189 55.0
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 9.3e-51 204.1 189 56.1
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 1.6e-50 203.4 185 55.7
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 1.6e-50 203.4 189 54.5
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 2.1e-50 203.0 189 52.9
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 2.1e-50 203.0 189 54.5
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 2.1e-50 203.0 185 56.8
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 2.1e-50 203.0 185 55.7
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 2.1e-50 203.0 187 55.6
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 2.7e-50 202.6 189 55.0
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 2.7e-50 202.6 191 53.4
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 2.7e-50 202.6 189 55.6
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 2.7e-50 202.6 190 55.3
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 2.7e-50 202.6 189 53.4
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 3.5e-50 202.2 192 53.6
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 3.5e-50 202.2 185 54.6
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 4.6e-50 201.8 189 54.0
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 4.6e-50 201.8 189 54.0
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 4.6e-50 201.8 189 55.0
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 4.6e-50 201.8 185 56.8
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 4.6e-50 201.8 189 54.5
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 6.0e-50 201.4 189 54.0
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 6.0e-50 201.4 185 55.1
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 6.0e-50 201.4 191 55.0
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 6.0e-50 201.4 185 55.1
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 7.9e-50 201.1 185 55.7
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 7.9e-50 201.1 189 54.0
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 7.9e-50 201.1 189 55.6
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 1.0e-49 200.7 189 54.0
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 1.0e-49 200.7 189 55.6
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 1.3e-49 200.3 189 54.0
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 1.3e-49 200.3 185 56.2
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 1.3e-49 200.3 193 54.4
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 1.8e-49 199.9 189 53.4
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 3.0e-49 199.1 193 54.4
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 3.0e-49 199.1 185 55.1
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 3.0e-49 199.1 189 55.0
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 3.0e-49 199.1 189 54.5
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 3.9e-49 198.7 185 55.1
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 3.9e-49 198.7 185 53.5
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 3.9e-49 198.7 185 55.7
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 5.1e-49 198.4 185 55.7
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 6.7e-49 198.0 185 54.6
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 8.7e-49 197.6 189 53.4
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 8.7e-49 197.6 185 55.1
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 8.7e-49 197.6 185 55.7
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 8.7e-49 197.6 189 55.0
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 1.1e-48 197.2 185 55.1
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 1.5e-48 196.8 185 54.6
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 3.3e-48 195.7 189 52.9
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 5.7e-48 194.9 189 53.4
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 7.4e-48 194.5 177 56.5
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.8e-46 189.9 190 48.4
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 4.2e-43 178.7 188 46.8
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 4.6e-42 175.3 161 55.9
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 2.3e-41 172.9 186 45.7
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 9.7e-40 167.5 153 56.9
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.2e-37 160.6 152 56.6
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 5.9e-37 158.3 185 44.9
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 2.2e-36 156.4 149 54.4
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 4.2e-35 152.1 189 44.4
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 5.1e-33 145.2 142 55.6
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 2.2e-31 139.8 143 54.5
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 1.7e-28 130.2 190 39.5
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.1e-27 127.5 181 40.9
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 9.4e-27 124.4 188 43.1
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 7.9e-26 121.3 188 41.0
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 1.6e-18 97.1 91 51.6
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 8.8e-17 91.3 86 53.5
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 4.1e-14 82.4 79 49.4
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 2.2e-12 76.6 162 32.7
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 4.0e-09 65.9 50 62.0


User provided reference genes

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