Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 0.0e+00 1118.2 689 100.0
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 1.8e-59 235.0 151 68.9
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 1.0e-54 219.2 149 65.8
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 3.3e-53 214.2 145 63.4
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 4.2e-53 213.8 153 62.7
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 4.2e-53 213.8 145 62.8
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 7.2e-53 213.0 145 64.8
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 9.5e-53 212.6 145 64.8
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 9.5e-53 212.6 145 64.1
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 1.2e-52 212.2 145 64.8
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 2.8e-52 211.1 154 61.0
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 8.0e-52 209.5 145 62.1
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 1.4e-51 208.8 145 62.1
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.4e-51 208.8 152 59.9
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.8e-51 208.4 145 62.1
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 2.3e-51 208.0 145 62.8
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 2.3e-51 208.0 146 62.3
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 3.0e-51 207.6 145 62.1
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.0e-51 207.6 145 61.4
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.0e-51 207.6 145 61.4
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 3.0e-51 207.6 145 63.4
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 3.0e-51 207.6 145 62.1
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.0e-51 207.2 145 61.4
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 5.2e-51 206.8 145 63.4
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 5.2e-51 206.8 145 63.4
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 5.2e-51 206.8 145 61.4
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 8.9e-51 206.1 145 61.4
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 8.9e-51 206.1 145 61.4
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 8.9e-51 206.1 145 62.1
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 8.9e-51 206.1 145 61.4
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.2e-50 205.7 146 61.0
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 1.2e-50 205.7 152 60.5
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 1.2e-50 205.7 145 62.1
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 1.5e-50 205.3 145 62.8
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.5e-50 205.3 158 56.3
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 2.0e-50 204.9 158 56.3
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 2.0e-50 204.9 145 61.4
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 2.6e-50 204.5 145 61.4
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 2.6e-50 204.5 145 59.3
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 2.6e-50 204.5 145 61.4
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 2.6e-50 204.5 158 56.3
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 2.6e-50 204.5 145 61.4
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 3.4e-50 204.1 166 54.8
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 3.4e-50 204.1 145 60.7
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 3.4e-50 204.1 149 61.7
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 5.7e-50 203.4 145 60.7
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 5.7e-50 203.4 145 60.7
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 7.5e-50 203.0 145 60.0
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 9.8e-50 202.6 152 57.9
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.3e-49 202.2 148 56.8
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 1.3e-49 202.2 145 59.3
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 1.7e-49 201.8 145 60.0
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 1.7e-49 201.8 145 60.0
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.7e-49 201.8 146 60.3
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 2.2e-49 201.4 145 60.0
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 2.2e-49 201.4 152 61.2
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 2.2e-49 201.4 145 60.0
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.2e-49 201.4 145 60.0
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.2e-49 201.4 145 60.0
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 2.2e-49 201.4 145 58.6
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 2.2e-49 201.4 153 58.2
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 2.2e-49 201.4 145 57.9
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.2e-49 201.4 145 60.7
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.2e-49 201.4 145 60.7
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 2.2e-49 201.4 145 60.0
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 2.2e-49 201.4 145 58.6
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 2.2e-49 201.4 148 58.8
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 2.2e-49 201.4 145 63.4
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.8e-49 201.1 145 60.7
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 2.8e-49 201.1 145 60.7
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 3.7e-49 200.7 153 57.5
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 3.7e-49 200.7 145 58.6
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 3.7e-49 200.7 146 61.0
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 3.7e-49 200.7 145 59.3
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 4.9e-49 200.3 145 59.3
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 4.9e-49 200.3 145 57.9
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 4.9e-49 200.3 161 56.5
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 4.9e-49 200.3 145 61.4
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 4.9e-49 200.3 145 58.6
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 4.9e-49 200.3 145 57.9
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 6.3e-49 199.9 145 62.8
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 6.3e-49 199.9 145 59.3
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 6.3e-49 199.9 145 59.3
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 8.3e-49 199.5 153 58.2
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.1e-48 199.1 145 60.0
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.1e-48 199.1 145 60.0
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 1.4e-48 198.7 145 59.3
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.4e-48 198.7 146 59.6
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 1.8e-48 198.4 145 59.3
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 1.8e-48 198.4 145 60.0
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 1.8e-48 198.4 145 59.3
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 1.8e-48 198.4 145 58.6
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 2.4e-48 198.0 145 57.9
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 5.4e-48 196.8 145 58.6
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 5.4e-48 196.8 145 61.4
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 7.0e-48 196.4 145 59.3
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 9.2e-48 196.1 145 59.3
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 9.2e-48 196.1 145 58.6
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 9.2e-48 196.1 145 61.4
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 9.2e-48 196.1 145 57.9
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 9.2e-48 196.1 145 60.7
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 9.2e-48 196.1 145 60.0
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.2e-47 195.7 146 59.6
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.2e-47 195.7 145 60.0
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 1.6e-47 195.3 146 57.5
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 2.7e-47 194.5 149 57.7
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 4.5e-47 193.7 146 56.2
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 7.8e-47 193.0 145 57.2
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.0e-46 192.6 146 56.8
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 1.0e-46 192.6 145 56.6
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 1.3e-46 192.2 152 58.6
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 6.6e-46 189.9 145 55.9
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 8.6e-46 189.5 163 52.8
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 8.6e-46 189.5 145 57.9
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 1.1e-45 189.1 145 55.9
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 1.1e-45 189.1 145 55.9
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 1.1e-45 189.1 145 55.9
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 1.5e-45 188.7 145 57.9
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 7.3e-45 186.4 151 55.6
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 2.3e-43 181.4 145 56.6
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 4.0e-43 180.6 149 53.0
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 1.2e-42 179.1 148 55.4
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 1.5e-42 178.7 149 52.3
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 2.6e-42 177.9 144 53.5
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 2.6e-42 177.9 144 53.5
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 3.4e-42 177.6 145 55.9
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.5e-37 161.4 140 51.4
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 6.8e-35 153.3 112 59.8
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 1.2e-34 152.5 112 56.2
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 1.2e-34 152.5 180 47.2
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 1.7e-33 148.7 102 59.8
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 2.9e-33 147.9 155 44.5
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.7e-33 147.5 153 45.8
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 4.9e-33 147.1 120 52.5
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 1.1e-32 146.0 160 45.0
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 1.9e-32 145.2 102 59.8
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.4e-32 144.8 112 52.7
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 5.8e-26 123.6 149 41.6
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 3.5e-23 114.4 95 51.6
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 5.1e-22 110.5 122 44.3
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.5e-21 108.2 70 64.3
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 3.3e-21 107.8 67 62.7
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.4e-19 101.7 60 66.7
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.4e-19 101.7 60 66.7
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 3.1e-19 101.3 67 59.7
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 8.9e-19 99.8 104 48.1
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 1.3e-17 95.9 75 57.3
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 8.4e-17 93.2 89 49.4
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 5.4e-16 90.5 83 53.0
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 1.2e-15 89.4 75 52.0
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 4.6e-15 87.4 78 56.4


User provided reference genes

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