Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 4.5e-152 541.2 270 100.0
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 2.1e-56 223.4 259 44.4
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 2.1e-56 223.4 272 44.1
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 3.6e-56 222.6 259 44.4
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 1.0e-55 221.1 264 43.9
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 1.4e-55 220.7 259 44.4
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 2.3e-55 219.9 259 44.8
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 2.3e-55 219.9 259 44.8
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 4.0e-55 219.2 260 44.2
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 1.2e-54 217.6 259 41.7
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 1.2e-54 217.6 265 43.8
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 2.0e-54 216.9 268 42.2
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 3.4e-54 216.1 252 43.7
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 3.4e-54 216.1 265 43.8
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 5.7e-54 215.3 268 40.3
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 5.7e-54 215.3 281 42.3
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 9.8e-54 214.5 266 42.5
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 1.3e-53 214.2 259 43.2
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 1.3e-53 214.2 266 40.2
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 2.8e-53 213.0 268 41.0
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 2.8e-53 213.0 263 41.4
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 3.7e-53 212.6 260 42.7
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 4.8e-53 212.2 265 41.9
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 4.8e-53 212.2 260 42.3
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 4.8e-53 212.2 256 43.0
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 8.3e-53 211.5 259 42.1
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.8e-52 210.3 255 42.4
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 1.8e-52 210.3 266 43.2
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 2.4e-52 209.9 263 42.6
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 3.1e-52 209.5 267 42.3
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 3.1e-52 209.5 266 41.0
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 3.1e-52 209.5 269 42.4
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 4.1e-52 209.1 264 43.2
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 9.1e-52 208.0 267 41.6
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 2.0e-51 206.8 268 42.5
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 2.0e-51 206.8 267 41.9
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 2.0e-51 206.8 265 41.5
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 2.7e-51 206.5 265 41.1
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 3.5e-51 206.1 265 41.5
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 3.5e-51 206.1 259 40.5
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 3.5e-51 206.1 266 38.7
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 4.5e-51 205.7 292 39.4
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 4.5e-51 205.7 264 41.3
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 7.7e-51 204.9 264 41.3
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 1.7e-50 203.8 263 41.8
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 2.9e-50 203.0 265 40.8
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 2.9e-50 203.0 259 40.5
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 6.5e-50 201.8 271 42.8
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 8.5e-50 201.4 259 40.5
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 1.9e-49 200.3 270 40.0
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 2.5e-49 199.9 268 41.8
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 3.2e-49 199.5 267 41.6
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 9.4e-49 198.0 265 40.4
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 1.2e-48 197.6 274 39.4
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 2.1e-48 196.8 256 41.8
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 4.7e-48 195.7 261 38.7
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 1.4e-47 194.1 265 39.2
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 2.3e-47 193.4 267 40.1
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 2.3e-47 193.4 217 45.2
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 8.8e-47 191.4 233 43.3
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 5.7e-46 188.7 260 38.5
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 7.5e-46 188.3 265 39.6
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 9.8e-46 188.0 273 38.8
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 2.8e-45 186.4 294 37.1
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 2.8e-45 186.4 266 38.3
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 6.3e-45 185.3 256 37.9
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 8.3e-45 184.9 294 37.1
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 1.2e-43 181.0 303 34.3
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 7.7e-43 178.3 266 38.7
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 1.9e-41 173.7 264 38.6
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 2.5e-41 173.3 210 43.3
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 7.2e-41 171.8 273 34.4
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.6e-40 170.6 259 37.5
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.6e-40 170.6 259 37.5
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 3.6e-40 169.5 267 40.1
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 4.0e-39 166.0 223 40.8
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 2.0e-38 163.7 302 34.4
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 3.4e-38 162.9 256 37.1
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 2.9e-37 159.8 266 36.1
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 4.1e-36 156.0 224 39.7
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.0e-35 153.7 175 45.7
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 4.6e-35 152.5 266 33.1
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 2.3e-34 150.2 185 43.2
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 1.5e-33 147.5 212 39.2
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.9e-33 147.1 265 34.3
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 4.7e-32 142.5 265 34.0
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 4.4e-30 136.0 171 41.5
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 4.4e-30 136.0 165 41.8
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 1.3e-29 134.4 169 40.2
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 2.2e-29 133.7 183 38.8
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 1.9e-28 130.6 170 41.2
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 4.1e-28 129.4 171 39.8
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 5.4e-28 129.0 168 41.7
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 4.6e-27 125.9 172 40.1
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 7.8e-27 125.2 171 40.9
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 1.3e-26 124.4 162 40.1
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 2.3e-26 123.6 184 38.0
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 8.6e-26 121.7 238 30.7
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 4.3e-25 119.4 185 38.9
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 2.8e-24 116.7 157 36.9
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 8.9e-23 111.7 144 41.7
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 2.6e-22 110.2 232 32.3
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.3e-21 107.8 230 33.9
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 1.7e-21 107.5 109 45.9
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 7.8e-19 98.6 231 29.9
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 7.8e-19 98.6 252 27.8
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 1.0e-18 98.2 146 37.0
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 5.2e-15 85.9 93 45.2
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 2.0e-14 84.0 85 47.1
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 2.0e-14 84.0 91 45.1
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 3.7e-13 79.7 76 46.1
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 1.1e-12 78.2 202 28.2
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 3.9e-10 69.7 114 32.5
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.1e-09 68.2 108 35.2
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.9e-09 67.4 77 40.3
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 3.4e-06 56.6 56 48.2


User provided reference genes

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