Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 3.7e-241 837.8 429 100.0
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 5.3e-94 349.0 505 47.3
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 5.0e-20 103.2 89 55.1
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 2.5e-19 100.9 78 59.0
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.5e-19 100.9 83 57.8
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 3.3e-19 100.5 83 56.6
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 5.6e-19 99.8 94 50.0
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 1.6e-18 98.2 78 60.3
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 3.6e-18 97.1 79 57.0
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 8.0e-18 95.9 77 61.0
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 8.0e-18 95.9 77 59.7
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 1.0e-17 95.5 78 56.4
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.4e-17 95.1 77 58.4
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 1.8e-17 94.7 92 52.2
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 2.3e-17 94.4 78 56.4
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.3e-17 94.4 79 57.0
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.3e-17 94.4 77 58.4
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 2.3e-17 94.4 77 58.4
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 4.0e-17 93.6 77 57.1
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 6.8e-17 92.8 78 57.7
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 8.9e-17 92.4 78 56.4
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 1.2e-16 92.0 78 52.6
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 2.0e-16 91.3 78 53.8
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.0e-16 91.3 90 50.0
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 2.6e-16 90.9 81 53.1
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 2.6e-16 90.9 78 57.7
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 2.6e-16 90.9 97 49.5
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 3.4e-16 90.5 114 43.9
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 3.4e-16 90.5 124 40.3
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 3.4e-16 90.5 77 54.5
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 3.4e-16 90.5 94 48.9
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 3.4e-16 90.5 107 45.8
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.4e-16 90.1 81 51.9
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 4.4e-16 90.1 80 56.2
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 5.8e-16 89.7 78 55.1
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 7.5e-16 89.4 78 55.1
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 7.5e-16 89.4 130 41.5
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 9.8e-16 89.0 79 53.2
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 9.8e-16 89.0 74 56.8
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 9.8e-16 89.0 74 56.8
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 9.8e-16 89.0 74 56.8
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 9.8e-16 89.0 78 52.6
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 9.8e-16 89.0 78 52.6
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.3e-15 88.6 81 54.3
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 1.3e-15 88.6 78 53.8
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.3e-15 88.6 77 55.8
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.3e-15 88.6 77 54.5
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 1.7e-15 88.2 111 44.1
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.7e-15 88.2 77 53.2
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 1.7e-15 88.2 78 52.6
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.2e-15 87.8 78 52.6
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 2.2e-15 87.8 78 55.1
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 2.9e-15 87.4 77 55.8
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 2.9e-15 87.4 78 53.8
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 3.7e-15 87.0 78 56.4
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 3.7e-15 87.0 78 56.4
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 3.7e-15 87.0 79 53.2
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 3.7e-15 87.0 79 53.2
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 3.7e-15 87.0 79 53.2
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 3.7e-15 87.0 131 38.9
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 3.7e-15 87.0 81 49.4
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 3.7e-15 87.0 77 53.2
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 4.9e-15 86.7 89 46.1
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 4.9e-15 86.7 89 47.2
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 4.9e-15 86.7 78 52.6
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 6.4e-15 86.3 76 52.6
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 6.4e-15 86.3 78 52.6
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 6.4e-15 86.3 155 38.1
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 8.3e-15 85.9 79 51.9
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 8.3e-15 85.9 78 51.3
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 8.3e-15 85.9 78 51.3
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 8.3e-15 85.9 132 37.9
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 1.1e-14 85.5 128 35.9
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 1.1e-14 85.5 79 53.2
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.4e-14 85.1 100 45.0
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.4e-14 85.1 81 51.9
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 1.4e-14 85.1 81 51.9
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 1.4e-14 85.1 87 49.4
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 1.4e-14 85.1 87 49.4
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 1.4e-14 85.1 76 53.9
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 1.9e-14 84.7 79 53.2
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.9e-14 84.7 152 35.5
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 1.9e-14 84.7 72 58.3
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.4e-14 84.3 83 48.2
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 2.4e-14 84.3 89 44.9
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 3.2e-14 84.0 79 53.2
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 3.2e-14 84.0 91 44.0
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 3.2e-14 84.0 88 52.3
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 3.2e-14 84.0 79 54.4
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 3.2e-14 84.0 76 51.3
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 3.2e-14 84.0 76 53.9
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 3.2e-14 84.0 134 38.8
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 4.1e-14 83.6 111 42.3
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 5.4e-14 83.2 114 39.5
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 5.4e-14 83.2 76 51.3
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 5.4e-14 83.2 77 53.2
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 7.0e-14 82.8 79 54.4
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 7.0e-14 82.8 76 51.3
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 9.2e-14 82.4 75 52.0
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 9.2e-14 82.4 77 53.2
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 1.6e-13 81.6 80 47.5
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 2.7e-13 80.9 98 42.9
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 2.7e-13 80.9 77 49.4
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 2.7e-13 80.9 92 46.7
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 3.5e-13 80.5 79 49.4
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.5e-13 80.5 132 36.4
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 3.5e-13 80.5 93 45.2
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 4.6e-13 80.1 114 40.4
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 4.6e-13 80.1 75 53.3
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 4.6e-13 80.1 89 44.9
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 4.6e-13 80.1 76 51.3
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 6.0e-13 79.7 90 45.6
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 6.0e-13 79.7 95 45.3
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 6.0e-13 79.7 77 50.6
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 1.0e-12 79.0 90 44.4
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.0e-12 79.0 132 35.6
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 1.0e-12 79.0 76 53.9
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 1.3e-12 78.6 80 47.5
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.3e-12 78.6 77 48.1
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.3e-12 78.6 123 36.6
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 1.3e-12 78.6 77 49.4
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 2.3e-12 77.8 79 51.9
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 2.3e-12 77.8 92 44.6
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 2.3e-12 77.8 79 48.1
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 2.3e-12 77.8 78 51.3
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 3.0e-12 77.4 90 44.4
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 3.0e-12 77.4 77 48.1
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.0e-12 77.4 77 48.1
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 5.0e-12 76.6 78 48.7
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.0e-12 76.6 77 48.1
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.0e-12 76.6 77 48.1
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 8.6e-12 75.9 79 50.6
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 8.6e-12 75.9 78 47.4
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.1e-11 75.5 77 48.1
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 1.1e-11 75.5 73 49.3
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 1.5e-11 75.1 90 43.3
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 1.5e-11 75.1 78 50.0
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 1.5e-11 75.1 80 47.5
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 5.6e-11 73.2 76 51.3
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 5.6e-11 73.2 79 49.4
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 7.3e-11 72.8 78 48.7
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.1e-10 71.2 67 52.2
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 2.8e-10 70.9 74 44.6
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 4.9e-07 60.1 85 43.5


User provided reference genes

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