Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g52693 Chara braunii HOM05D005159 ORTHO05D006237 5.0e-79 297.7 155 100.0
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 2.4e-41 172.6 199 55.3
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 9.3e-17 90.9 173 35.8
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 8.7e-15 84.3 173 35.8
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 1.6e-13 80.1 175 32.0
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 2.8e-13 79.3 137 35.8
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 2.8e-13 79.3 169 31.4
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 3.7e-13 79.0 175 32.0
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 4.8e-13 78.6 131 38.2
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 4.8e-13 78.6 137 35.8
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 6.3e-13 78.2 168 31.5
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 6.3e-13 78.2 154 31.8
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 8.2e-13 77.8 168 29.8
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 8.2e-13 77.8 135 37.8
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 8.2e-13 77.8 137 35.8
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 8.2e-13 77.8 137 35.8
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 8.2e-13 77.8 137 35.0
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 8.2e-13 77.8 137 35.8
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 1.1e-12 77.4 182 30.2
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 1.1e-12 77.4 136 32.4
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 1.4e-12 77.0 169 32.5
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.4e-12 77.0 169 32.5
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 1.8e-12 76.6 132 35.6
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 1.8e-12 76.6 179 29.6
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 3.1e-12 75.9 179 30.7
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 3.1e-12 75.9 154 33.8
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 3.1e-12 75.9 135 34.8
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 3.1e-12 75.9 176 28.4
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 3.1e-12 75.9 134 34.3
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 3.1e-12 75.9 137 34.3
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 4.1e-12 75.5 179 30.7
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 4.1e-12 75.5 193 29.0
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 4.1e-12 75.5 137 34.3
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 4.1e-12 75.5 169 32.5
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 5.3e-12 75.1 182 33.0
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 5.3e-12 75.1 136 33.1
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 5.3e-12 75.1 135 36.3
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 5.3e-12 75.1 161 32.9
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 5.3e-12 75.1 152 32.9
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 5.3e-12 75.1 132 34.1
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 6.9e-12 74.7 135 36.3
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 6.9e-12 74.7 170 31.2
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 6.9e-12 74.7 169 33.1
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 6.9e-12 74.7 135 33.3
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 6.9e-12 74.7 135 32.6
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 6.9e-12 74.7 197 28.9
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 9.0e-12 74.3 134 33.6
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 9.0e-12 74.3 175 30.3
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 9.0e-12 74.3 135 34.1
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 1.2e-11 73.9 163 30.1
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 1.2e-11 73.9 173 32.4
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 1.5e-11 73.6 168 29.8
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 1.5e-11 73.6 148 31.8
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 1.5e-11 73.6 161 32.3
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 2.0e-11 73.2 136 35.3
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 2.0e-11 73.2 135 34.1
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 2.0e-11 73.2 136 33.1
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.6e-11 72.8 134 31.3
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 2.6e-11 72.8 135 34.1
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 3.4e-11 72.4 135 32.6
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 3.4e-11 72.4 172 27.3
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 3.4e-11 72.4 171 29.2
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 4.5e-11 72.0 166 29.5
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 4.5e-11 72.0 136 35.3
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 4.5e-11 72.0 134 29.9
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 4.5e-11 72.0 131 34.4
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 5.9e-11 71.6 135 31.1
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 5.9e-11 71.6 178 32.0
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 5.9e-11 71.6 135 31.1
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 5.9e-11 71.6 136 32.4
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 7.7e-11 71.2 175 28.6
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 7.7e-11 71.2 135 33.3
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 7.7e-11 71.2 135 31.1
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 1.0e-10 70.9 135 31.1
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 1.0e-10 70.9 135 29.6
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 1.0e-10 70.9 135 29.6
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 1.0e-10 70.9 132 32.6
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 1.0e-10 70.9 179 29.6
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 1.3e-10 70.5 136 34.6
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 1.3e-10 70.5 169 30.2
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 1.7e-10 70.1 191 30.4
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 2.2e-10 69.7 176 28.4
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 2.2e-10 69.7 176 28.4
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 2.2e-10 69.7 179 26.3
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 2.9e-10 69.3 136 30.9
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 2.9e-10 69.3 177 27.1
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 3.8e-10 68.9 125 31.2
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 3.8e-10 68.9 164 29.9
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 5.0e-10 68.6 178 29.2
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 5.0e-10 68.6 137 33.6
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 6.5e-10 68.2 198 31.3
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 6.5e-10 68.2 177 26.6
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 6.5e-10 68.2 135 32.6
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 8.5e-10 67.8 136 33.1
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 8.5e-10 67.8 136 33.1
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 8.5e-10 67.8 136 33.1
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 8.5e-10 67.8 136 33.1
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 8.5e-10 67.8 171 28.1
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 1.1e-09 67.4 168 28.6
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 1.1e-09 67.4 159 30.2
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 1.1e-09 67.4 174 28.2
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 1.4e-09 67.0 134 33.6
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 1.9e-09 66.6 138 32.6
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 3.2e-09 65.9 136 32.4
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 3.2e-09 65.9 133 30.1
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 3.2e-09 65.9 170 27.6
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 4.2e-09 65.5 173 29.5
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 4.2e-09 65.5 174 27.6
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 4.2e-09 65.5 175 29.1
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 5.5e-09 65.1 170 31.8
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 7.2e-09 64.7 159 28.9
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 9.4e-09 64.3 179 27.9
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 9.4e-09 64.3 160 30.6
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 9.4e-09 64.3 150 28.0
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 1.6e-08 63.5 134 29.9
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 3.6e-08 62.4 136 31.6
Medtr8g085830 Medicago truncatula HOM05D005159 ORTHO05D006237 6.1e-08 61.6 42 66.7
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 1.8e-07 60.1 191 27.2
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 3.0e-07 59.3 205 24.9
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 5.1e-07 58.5 172 29.7
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 5.1e-07 58.5 172 29.7
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 5.1e-07 58.5 181 29.8
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 6.7e-07 58.2 70 45.7
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 1.5e-06 57.0 154 27.9
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.0e-06 56.6 42 59.5


User provided reference genes

Program Settings