Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 6.7e-40 166.8 78 100.0
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 7.5e-23 110.2 73 69.9
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 9.8e-23 109.8 80 65.0
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 3.7e-22 107.8 73 67.1
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 8.3e-22 106.7 77 63.6
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 1.1e-21 106.3 75 65.3
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 1.4e-21 105.9 64 71.9
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 1.4e-21 105.9 79 63.3
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 1.8e-21 105.5 77 64.9
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 2.4e-21 105.1 77 63.6
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 2.4e-21 105.1 68 69.1
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 2.4e-21 105.1 70 67.1
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 3.1e-21 104.8 81 60.5
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 3.1e-21 104.8 79 63.3
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 3.1e-21 104.8 76 63.2
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 3.1e-21 104.8 73 65.8
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 3.1e-21 104.8 76 63.2
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 3.1e-21 104.8 76 63.2
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 3.1e-21 104.8 80 62.5
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 3.1e-21 104.8 75 64.0
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 3.1e-21 104.8 79 63.3
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 4.1e-21 104.4 75 62.7
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 4.1e-21 104.4 81 61.7
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 5.4e-21 104.0 79 62.0
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 5.4e-21 104.0 75 64.0
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 5.4e-21 104.0 76 61.8
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 5.4e-21 104.0 76 61.8
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 5.4e-21 104.0 73 65.8
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 5.4e-21 104.0 65 70.8
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 5.4e-21 104.0 80 63.8
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 7.0e-21 103.6 68 67.6
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 7.0e-21 103.6 77 62.3
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 7.0e-21 103.6 82 59.8
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 7.0e-21 103.6 80 61.2
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 7.0e-21 103.6 75 62.7
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 9.1e-21 103.2 73 64.4
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 9.1e-21 103.2 77 63.6
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 9.1e-21 103.2 80 62.5
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 9.1e-21 103.2 80 62.5
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 9.1e-21 103.2 80 62.5
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 9.1e-21 103.2 80 62.5
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 9.1e-21 103.2 73 64.4
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 9.1e-21 103.2 76 60.5
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 9.1e-21 103.2 75 62.7
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 9.1e-21 103.2 77 61.0
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 1.2e-20 102.8 77 62.3
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 1.2e-20 102.8 77 62.3
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 1.2e-20 102.8 77 62.3
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 1.2e-20 102.8 77 62.3
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 1.2e-20 102.8 75 62.7
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 1.2e-20 102.8 76 60.5
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 1.2e-20 102.8 77 59.7
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 1.2e-20 102.8 76 61.8
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 1.6e-20 102.4 75 64.0
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 1.6e-20 102.4 68 67.6
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 1.6e-20 102.4 77 62.3
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 1.6e-20 102.4 77 62.3
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 1.6e-20 102.4 76 64.5
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 1.6e-20 102.4 77 62.3
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 1.6e-20 102.4 68 67.6
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 1.6e-20 102.4 77 62.3
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 1.6e-20 102.4 68 67.6
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 1.6e-20 102.4 68 67.6
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 1.6e-20 102.4 77 62.3
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 1.6e-20 102.4 77 62.3
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 1.6e-20 102.4 77 62.3
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 1.6e-20 102.4 77 62.3
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 2.0e-20 102.1 77 62.3
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 2.0e-20 102.1 76 63.2
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 2.0e-20 102.1 75 62.7
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 2.0e-20 102.1 77 62.3
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 2.0e-20 102.1 77 61.0
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 2.7e-20 101.7 77 62.3
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 2.7e-20 101.7 76 59.2
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 2.7e-20 101.7 77 62.3
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 2.7e-20 101.7 76 63.2
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 2.7e-20 101.7 79 62.0
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 3.5e-20 101.3 73 63.0
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 3.5e-20 101.3 76 59.2
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 3.5e-20 101.3 77 62.3
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 3.5e-20 101.3 77 62.3
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 3.5e-20 101.3 68 66.2
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 3.5e-20 101.3 77 61.0
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 3.5e-20 101.3 77 61.0
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 3.5e-20 101.3 76 60.5
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 3.5e-20 101.3 68 66.2
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 3.5e-20 101.3 77 61.0
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 3.5e-20 101.3 75 62.7
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 4.5e-20 100.9 76 59.2
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 4.5e-20 100.9 68 66.2
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 4.5e-20 100.9 75 61.3
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 5.9e-20 100.5 77 59.7
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 5.9e-20 100.5 76 59.2
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 5.9e-20 100.5 77 59.7
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 5.9e-20 100.5 61 70.5
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 5.9e-20 100.5 61 70.5
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 5.9e-20 100.5 61 70.5
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 7.7e-20 100.1 76 60.5
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 7.7e-20 100.1 76 59.2
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 7.7e-20 100.1 83 59.0
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 7.7e-20 100.1 77 61.0
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 1.0e-19 99.8 80 60.0
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 1.0e-19 99.8 83 60.2
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 1.0e-19 99.8 81 60.5
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 1.0e-19 99.8 75 58.7
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 1.3e-19 99.4 76 59.2
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 1.3e-19 99.4 76 59.2
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 1.3e-19 99.4 76 59.2
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 1.3e-19 99.4 60 71.7
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 1.3e-19 99.4 77 59.7
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 1.3e-19 99.4 61 70.5
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 1.3e-19 99.4 76 57.9
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 1.3e-19 99.4 77 59.7
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 1.7e-19 99.0 68 64.7
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.7e-19 99.0 81 59.3
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.7e-19 99.0 81 59.3
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.7e-19 99.0 81 59.3
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.7e-19 99.0 81 59.3
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.7e-19 99.0 81 59.3
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.7e-19 99.0 81 59.3
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 2.3e-19 98.6 81 59.3
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 2.9e-19 98.2 76 61.8
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 2.9e-19 98.2 68 63.2
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 5.0e-19 97.4 73 60.3
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 5.0e-19 97.4 73 60.3
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 5.0e-19 97.4 73 60.3
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 5.0e-19 97.4 75 57.3
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 1.1e-18 96.3 63 66.7
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 1.9e-18 95.5 57 71.9
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 2.1e-17 92.0 56 69.6
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 3.6e-17 91.3 50 76.0
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 8.0e-17 90.1 69 60.9
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 1.0e-16 89.7 71 60.6
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 2.3e-16 88.6 100 47.0
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 3.0e-16 88.2 50 74.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 5.2e-16 87.4 50 74.0
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 8.9e-16 86.7 102 47.1
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 2.0e-15 85.5 67 52.2
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 4.4e-15 84.3 50 72.0
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 2.2e-14 82.0 49 67.3
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 3.2e-13 78.2 62 56.5
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 5.2e-08 60.8 56 57.1


User provided reference genes

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