Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 7.3e-59 232.3 218 100.0
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.8e-12 78.2 58 58.6
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 3.9e-12 77.0 57 61.4
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 8.8e-12 75.9 71 52.1
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 1.1e-11 75.5 58 55.2
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.5e-11 75.1 58 55.2
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.5e-11 75.1 58 56.9
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 1.5e-11 75.1 58 56.9
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 1.5e-11 75.1 58 55.2
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.0e-11 74.7 59 59.3
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 2.0e-11 74.7 58 56.9
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 2.6e-11 74.3 58 56.9
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 2.6e-11 74.3 56 58.9
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 2.6e-11 74.3 56 57.1
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.3e-11 73.9 58 55.2
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.3e-11 73.9 58 55.2
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 3.3e-11 73.9 58 55.2
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 4.4e-11 73.6 59 52.5
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 4.4e-11 73.6 61 57.4
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 4.4e-11 73.6 71 49.3
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 5.7e-11 73.2 61 52.5
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 7.4e-11 72.8 58 56.9
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.4e-11 72.8 58 55.2
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 9.7e-11 72.4 56 57.1
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 9.7e-11 72.4 71 47.9
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.3e-10 72.0 56 57.1
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.3e-10 72.0 56 57.1
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 1.7e-10 71.6 58 53.4
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 1.7e-10 71.6 56 55.4
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.7e-10 71.6 57 57.9
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.7e-10 71.6 56 55.4
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.7e-10 71.6 56 55.4
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 2.2e-10 71.2 56 57.1
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 2.2e-10 71.2 58 51.7
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 2.2e-10 71.2 58 53.4
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.2e-10 71.2 58 53.4
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 2.2e-10 71.2 56 53.6
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.8e-10 70.9 63 49.2
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.8e-10 70.9 58 53.4
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.8e-10 70.9 58 53.4
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 2.8e-10 70.9 55 56.4
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.8e-10 70.9 59 54.2
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.8e-10 70.9 59 54.2
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 3.7e-10 70.5 56 55.4
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 3.7e-10 70.5 59 57.6
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 3.7e-10 70.5 57 56.1
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 3.7e-10 70.5 57 56.1
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 3.7e-10 70.5 71 49.3
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 3.7e-10 70.5 56 55.4
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 3.7e-10 70.5 58 55.2
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 3.7e-10 70.5 56 53.6
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 4.8e-10 70.1 58 53.4
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 4.8e-10 70.1 57 57.9
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.8e-10 70.1 59 57.6
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 4.8e-10 70.1 56 55.4
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 4.8e-10 70.1 58 53.4
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 6.3e-10 69.7 56 53.6
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 6.3e-10 69.7 71 47.9
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 6.3e-10 69.7 58 51.7
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 6.3e-10 69.7 59 50.8
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 6.3e-10 69.7 62 54.8
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 6.3e-10 69.7 62 54.8
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 8.2e-10 69.3 71 47.9
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 8.2e-10 69.3 58 51.7
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 8.2e-10 69.3 58 53.4
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.1e-09 68.9 71 47.9
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 1.1e-09 68.9 71 47.9
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 1.1e-09 68.9 55 52.7
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 1.1e-09 68.9 58 53.4
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 1.4e-09 68.6 59 49.2
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.4e-09 68.6 56 55.4
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 1.4e-09 68.6 56 55.4
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.4e-09 68.6 56 55.4
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 1.4e-09 68.6 61 52.5
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.4e-09 68.6 59 45.8
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.4e-09 68.6 56 53.6
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 1.8e-09 68.2 58 53.4
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.8e-09 68.2 56 53.6
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.8e-09 68.2 55 54.5
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.8e-09 68.2 61 50.8
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 1.8e-09 68.2 58 51.7
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 1.8e-09 68.2 71 46.5
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 2.4e-09 67.8 58 50.0
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 2.4e-09 67.8 58 50.0
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.4e-09 67.8 62 46.8
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 2.4e-09 67.8 56 50.0
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 2.4e-09 67.8 55 52.7
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 3.1e-09 67.4 56 53.6
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 3.1e-09 67.4 56 51.8
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 3.1e-09 67.4 54 51.9
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 3.1e-09 67.4 58 53.4
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 3.1e-09 67.4 62 45.2
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 3.1e-09 67.4 58 51.7
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 3.1e-09 67.4 56 55.4
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 4.1e-09 67.0 71 45.1
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 4.1e-09 67.0 71 45.1
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 4.1e-09 67.0 71 45.1
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 4.1e-09 67.0 56 50.0
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 4.1e-09 67.0 71 46.5
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 4.1e-09 67.0 56 53.6
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 4.1e-09 67.0 56 53.6
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 4.1e-09 67.0 56 50.0
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 4.1e-09 67.0 56 50.0
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 5.3e-09 66.6 58 50.0
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 5.3e-09 66.6 58 48.3
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 7.0e-09 66.2 58 48.3
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 9.1e-09 65.9 55 54.5
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.2e-08 65.5 63 46.0
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.2e-08 65.5 59 50.8
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.2e-08 65.5 56 51.8
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 1.6e-08 65.1 54 55.6
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 2.0e-08 64.7 55 50.9
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 2.0e-08 64.7 55 50.9
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 2.0e-08 64.7 56 48.2
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 2.6e-08 64.3 55 52.7
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 3.5e-08 63.9 55 54.5
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 3.5e-08 63.9 55 49.1
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 4.5e-08 63.5 55 49.1
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 4.5e-08 63.5 56 48.2
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 7.7e-08 62.8 55 49.1
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 1.0e-07 62.4 55 52.7
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 1.0e-07 62.4 55 50.9
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 1.3e-07 62.0 54 53.7
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 2.2e-07 61.2 55 52.7
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 2.2e-07 61.2 61 45.9
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 5.0e-07 60.1 56 51.8
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 8.5e-07 59.3 56 50.0
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 8.5e-07 59.3 76 39.5
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 1.5e-06 58.5 72 41.7
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.5e-06 57.8 53 47.2
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.5e-06 57.8 56 46.4
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.2e-06 56.2 56 46.4
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 7.2e-06 56.2 55 50.9


User provided reference genes

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