Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g51948 Chara braunii HOM05D001340 ORTHO05D028747 0.0e+00 1268.8 758 100.0
CBR_g917 Chara braunii HOM05D000868 ORTHO05D005342 1.4e-28 132.5 196 46.9
PRCOL_00004223 Prasinoderma coloniale HOM05D001340 ORTHO05D028747 1.1e-20 106.3 333 30.6
Cre12.g556100 Chlamydomonas reinhardtii HOM05D001340 ORTHO05D028747 3.0e-15 88.2 342 26.3
MCO13G437 Micromonas commoda HOM05D002462 ORTHO05D002893 3.3e-14 84.7 74 52.7
Pp3c7_24250 Physcomitrium patens HOM05D001340 ORTHO05D028747 2.8e-13 81.6 123 38.2
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 8.3e-10 70.1 76 50.0
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 2.4e-09 68.6 73 52.1
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 2.4e-09 68.6 76 47.4
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 3.2e-09 68.2 82 46.3
THA.LOC104816892 Tarenaya hassleriana HOM05D001340 ORTHO05D005342 4.1e-09 67.8 76 48.7
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 5.4e-09 67.4 76 48.7
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 7.1e-09 67.0 82 46.3
Duzib106G0021 Durio zibethinus HOM05D001340 ORTHO05D005342 7.1e-09 67.0 82 45.1
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 1.2e-08 66.2 69 49.3
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 1.2e-08 66.2 64 54.7
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 1.6e-08 65.9 64 53.1
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 1.6e-08 65.9 74 50.0
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 2.1e-08 65.5 116 37.9
Hma1.2p1_0008F-1.1_g005585 Hydrangea macrophylla HOM05D001340 ORTHO05D005342 2.1e-08 65.5 64 53.1
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 2.1e-08 65.5 64 54.7
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 2.7e-08 65.1 64 53.1
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 3.5e-08 64.7 76 46.1
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 4.6e-08 64.3 82 45.1
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 6.0e-08 63.9 64 51.6
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 6.0e-08 63.9 64 50.0
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 7.8e-08 63.5 64 51.6
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 1.0e-07 63.2 124 37.9
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 1.0e-07 63.2 82 46.3
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 1.0e-07 63.2 64 51.6
HanXRQChr06g0173421 Helianthus annuus HOM05D001340 ORTHO05D005342 1.3e-07 62.8 82 42.7
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 1.3e-07 62.8 64 51.6
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 1.3e-07 62.8 64 50.0
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 1.3e-07 62.8 69 49.3
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 1.7e-07 62.4 64 48.4
AUR62000388 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.7e-07 62.4 82 43.9
TAR706G0001 Trochodendron aralioides HOM05D001340 ORTHO05D005342 1.7e-07 62.4 64 51.6
CBR_g48354 Chara braunii HOM05D001340 ORTHO05D005342 2.3e-07 62.0 125 32.8
CBR_g3787 Chara braunii HOM05D001340 ORTHO05D005342 5.1e-07 60.8 116 33.6
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 5.1e-07 60.8 131 36.6
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 5.1e-07 60.8 116 35.3
Zm00001eb354870 Zea mays HOM05D001340 ORTHO05D005342 6.6e-07 60.5 88 42.0
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 8.6e-07 60.1 134 38.1
Atru.chr2.201 Acer truncatum HOM05D001340 ORTHO05D005342 1.1e-06 59.7 121 37.2
Ca_10175_v3 Cicer arietinum L. HOM05D001340 ORTHO05D005342 1.1e-06 59.7 64 48.4
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 1.1e-06 59.7 131 35.9
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 1.1e-06 59.7 131 35.9
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 1.1e-06 59.7 81 44.4
Sc09g0002630 Simmondsia chinensis HOM05D001340 ORTHO05D005342 1.1e-06 59.7 142 33.1
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 1.5e-06 59.3 121 38.0
Nitab4.5_0007698g0020 Nicotiana tabacum HOM05D001340 ORTHO05D005342 1.5e-06 59.3 72 48.6
Actinidia35520 Actinidia chinensis HOM05D001340 ORTHO05D005342 1.9e-06 58.9 160 34.4
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 1.9e-06 58.9 111 38.7
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 1.9e-06 58.9 134 35.8
Pp3c7_6470 Physcomitrium patens HOM05D001310 ORTHO05D001283 1.9e-06 58.9 78 39.7
Cpa.g.sc29.105 Carica papaya HOM05D002462 ORTHO05D002893 2.5e-06 58.5 68 39.7
Cre12.g544752 Chlamydomonas reinhardtii HOM05D031178 ORTHO05D024999 3.3e-06 58.2 69 44.9
Eucgr.D02024 Eucalyptus grandis HOM05D002462 ORTHO05D002893 3.3e-06 58.2 68 41.2
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 4.3e-06 57.8 119 37.8
Lj8A256T45 Lonicera japonica HOM05D002462 ORTHO05D002893 4.3e-06 57.8 68 39.7
Phvul.007G201600 Phaseolus vulgaris HOM05D001340 ORTHO05D005342 4.3e-06 57.8 64 46.9
Hund14611 Selenicereus undatus HOM05D002462 ORTHO05D002893 5.6e-06 57.4 64 39.1
CAN.G1.66 Capsicum annuum HOM05D001340 ORTHO05D005342 7.3e-06 57.0 64 53.1
COL.COLO4_04375 Corchorus olitorius HOM05D001310 ORTHO05D001283 7.3e-06 57.0 83 36.1
COL.COLO4_05548 Corchorus olitorius HOM05D001340 ORTHO05D005342 7.3e-06 57.0 142 34.5
Glyma.06G236676 Glycine max HOM05D000961 ORTHO05D005342 7.3e-06 57.0 64 46.9
Glyma.20G096900 Glycine max HOM05D001340 ORTHO05D005342 7.3e-06 57.0 64 46.9
Hma1.2p1_0367F.1_g136990 Hydrangea macrophylla HOM05D002462 ORTHO05D002893 7.3e-06 57.0 68 39.7
Mapoly0127s0050 Marchantia polymorpha HOM05D001340 ORTHO05D005342 7.3e-06 57.0 123 31.7
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 7.3e-06 57.0 114 34.2
Hund23305 Selenicereus undatus HOM05D001340 ORTHO05D011069 7.3e-06 57.0 67 46.3
CSS0036070 Camellia sinensis var. sinensis HOM05D001310 ORTHO05D001283 9.5e-06 56.6 82 37.8
CBR_g18648 Chara braunii HOM05D001340 ORTHO05D005342 9.5e-06 56.6 64 45.3
Glyma.10G146800 Glycine max HOM05D001340 ORTHO05D005342 9.5e-06 56.6 64 46.9
SMO119G0158 Selaginella moellendorffii HOM05D001340 ORTHO05D005342 9.5e-06 56.6 145 34.5


User provided reference genes

Program Settings