Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.8e-247 859.0 496 100.0
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 8.2e-123 444.9 365 64.4
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 2.4e-122 443.4 365 63.8
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 4.9e-120 435.6 365 63.0
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 1.9e-119 433.7 365 63.0
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.2e-118 431.0 365 61.9
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 4.6e-118 429.1 366 61.2
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 6.0e-118 428.7 365 62.2
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 7.9e-118 428.3 365 61.9
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 1.0e-117 427.9 365 61.9
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.0e-117 427.9 374 59.9
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 1.3e-117 427.6 360 61.7
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.0e-117 426.4 365 61.9
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 3.0e-117 426.4 365 61.9
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.9e-117 426.0 364 61.5
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 3.9e-117 426.0 365 61.4
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 5.1e-117 425.6 365 62.2
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 6.7e-117 425.2 365 61.1
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 6.7e-117 425.2 365 61.1
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 6.7e-117 425.2 365 61.4
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 8.7e-117 424.9 365 60.5
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 8.7e-117 424.9 365 60.8
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 1.9e-116 423.7 365 61.4
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.9e-116 423.7 365 61.6
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 1.9e-116 423.7 365 60.3
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.5e-116 423.3 365 61.4
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 2.5e-116 423.3 365 62.2
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 3.3e-116 422.9 365 61.4
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 3.3e-116 422.9 365 60.8
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 3.3e-116 422.9 365 60.0
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 3.3e-116 422.9 365 61.4
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 4.3e-116 422.5 365 61.4
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 4.3e-116 422.5 365 61.4
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 4.3e-116 422.5 365 61.1
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 4.3e-116 422.5 365 60.8
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 5.7e-116 422.2 365 61.6
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 7.4e-116 421.8 365 61.4
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 7.4e-116 421.8 365 60.5
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 7.4e-116 421.8 365 61.4
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 7.4e-116 421.8 365 61.1
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 7.4e-116 421.8 365 60.0
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 9.6e-116 421.4 368 59.5
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 9.6e-116 421.4 368 59.5
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 9.6e-116 421.4 365 61.4
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 9.6e-116 421.4 365 61.4
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 1.3e-115 421.0 365 60.8
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.3e-115 421.0 360 61.7
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 1.3e-115 421.0 365 60.0
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 1.6e-115 420.6 365 61.1
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 1.6e-115 420.6 365 59.7
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.6e-115 420.6 365 60.8
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 2.1e-115 420.2 365 60.8
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 2.1e-115 420.2 365 60.8
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 2.1e-115 420.2 365 61.4
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 2.8e-115 419.9 365 60.0
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 3.7e-115 419.5 360 61.4
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 3.7e-115 419.5 367 61.3
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 3.7e-115 419.5 365 60.5
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 4.8e-115 419.1 365 59.7
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 6.3e-115 418.7 365 60.8
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 6.3e-115 418.7 365 60.8
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 6.3e-115 418.7 365 60.8
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 6.3e-115 418.7 365 60.8
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 6.3e-115 418.7 365 61.1
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 8.2e-115 418.3 365 61.1
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 8.2e-115 418.3 360 60.8
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 8.2e-115 418.3 365 60.8
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 8.2e-115 418.3 365 60.8
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.1e-114 417.9 360 61.4
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 1.1e-114 417.9 365 60.8
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 1.1e-114 417.9 365 59.7
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.1e-114 417.9 360 61.7
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.4e-114 417.5 365 60.8
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 1.4e-114 417.5 365 60.5
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 1.4e-114 417.5 365 60.8
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 1.4e-114 417.5 365 60.8
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.8e-114 417.2 360 61.4
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.8e-114 417.2 360 60.6
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 1.8e-114 417.2 359 61.3
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 1.8e-114 417.2 365 60.0
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.8e-114 417.2 365 60.8
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 1.8e-114 417.2 365 60.3
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 2.4e-114 416.8 377 59.9
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 3.1e-114 416.4 367 60.8
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 3.1e-114 416.4 365 60.3
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 3.1e-114 416.4 360 61.1
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 3.1e-114 416.4 360 61.1
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 4.1e-114 416.0 367 60.8
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 4.1e-114 416.0 365 59.5
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 4.1e-114 416.0 365 60.5
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.1e-114 416.0 365 60.5
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 5.3e-114 415.6 365 60.3
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 5.3e-114 415.6 365 60.5
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 6.9e-114 415.2 365 60.8
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 6.9e-114 415.2 366 61.2
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 6.9e-114 415.2 365 60.5
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 9.0e-114 414.8 360 60.0
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 9.0e-114 414.8 365 59.5
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 9.0e-114 414.8 365 60.5
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 1.2e-113 414.5 365 60.3
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 1.5e-113 414.1 365 60.5
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 1.5e-113 414.1 365 60.0
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.5e-113 414.1 440 53.0
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 3.4e-113 412.9 365 60.3
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 7.6e-113 411.8 360 60.6
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.3e-112 411.0 365 60.5
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 1.3e-112 411.0 363 60.6
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.2e-112 410.2 366 60.1
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 3.8e-112 409.5 360 59.2
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.1e-111 407.9 366 59.6
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 1.1e-111 407.9 360 60.6
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.4e-111 407.5 365 60.8
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.4e-111 407.5 365 60.8
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.9e-111 407.1 365 60.5
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 2.5e-111 406.8 365 59.7
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.2e-110 404.4 365 59.5
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.2e-110 404.4 408 55.1
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.1e-110 403.7 365 58.6
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 2.1e-110 403.7 360 60.6
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 3.6e-110 402.9 342 62.0
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 1.5e-105 387.5 365 59.5
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 8.5e-104 381.7 317 63.1
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 1.1e-103 381.3 365 57.0
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 7.2e-103 378.6 376 56.4
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.6e-102 377.5 407 52.3
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 3.6e-102 376.3 360 53.9
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 3.0e-101 373.2 439 48.7
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 5.1e-101 372.5 308 64.0
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 2.0e-100 370.5 360 52.5
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 1.3e-99 367.9 365 52.9
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 1.3e-99 367.9 359 52.6
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 1.4e-98 364.4 362 52.5
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 4.1e-98 362.8 357 52.7
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 9.1e-98 361.7 365 55.6
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 9.1e-98 361.7 380 51.3
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.3e-96 357.8 359 52.1
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 5.0e-96 355.9 292 64.4
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 1.9e-95 354.0 302 62.3
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.2e-94 351.3 363 50.1
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 2.1e-94 350.5 293 62.5
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 3.9e-93 346.3 365 54.2
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 5.3e-90 335.9 361 49.0
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 5.3e-90 335.9 363 48.8
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 1.5e-87 327.8 320 55.9
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 2.7e-65 253.8 363 42.4
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 4.3e-63 246.5 297 46.5
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 1.5e-60 238.0 216 58.3
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.5e-60 238.0 331 41.1
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 8.1e-46 189.1 188 57.4
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 6.4e-43 179.5 160 58.8
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 3.5e-41 173.7 138 65.9
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 1.5e-36 158.3 212 43.4
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 1.6e-30 138.3 120 57.5
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.5e-28 131.7 165 45.5
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 1.3e-27 128.6 119 53.8
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.8e-21 108.2 91 61.5
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.6e-20 104.4 80 58.8
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 5.8e-20 103.2 83 61.4
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 2.2e-11 74.7 77 48.1
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 1.6e-09 68.6 78 48.7
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 2.7e-09 67.8 66 50.0
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 4.6e-09 67.0 94 43.6
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 2.8e-06 57.8 53 56.6


User provided reference genes

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