Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g51444 Chara braunii HOM05D005683 ORTHO05D006958 3.9e-72 274.6 132 100.0
CBR_g51437 Chara braunii HOM05D000414 ORTHO05D006958 1.4e-16 90.1 133 38.3
CBR_g34304 Chara braunii HOM05D005683 ORTHO05D006958 2.2e-11 72.8 85 42.4
Glyma.15G066100 Glycine max HOM05D005683 ORTHO05D006958 3.8e-11 72.0 117 33.3
Ca_18471_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 2.1e-09 66.2 132 34.8
Actinidia11820 Actinidia chinensis HOM05D003506 ORTHO05D006958 2.7e-09 65.9 117 32.5
CBR_g51446 Chara braunii HOM05D005683 ORTHO05D131347 2.7e-09 65.9 116 37.9
Glyma.13G247700 Glycine max HOM05D005683 ORTHO05D006958 2.7e-09 65.9 117 30.8
Lj6g0011505 Lotus japonicus HOM05D005683 ORTHO05D006958 2.7e-09 65.9 116 32.8
QL05p080525 Quercus lobata HOM05D005683 ORTHO05D006958 2.7e-09 65.9 116 33.6
CBR_g51429 Chara braunii HOM05D005683 ORTHO05D006958 4.7e-09 65.1 126 32.5
DCAR_004160 Daucus carota HOM05D005683 ORTHO05D006958 6.1e-09 64.7 120 30.8
Phvul.006G193600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 8.0e-09 64.3 117 34.2
Sc17g0006760 Simmondsia chinensis HOM05D005683 ORTHO05D006958 8.0e-09 64.3 116 33.6
Actinidia24049 Actinidia chinensis HOM05D005683 ORTHO05D006958 1.0e-08 63.9 117 30.8
GSVIVG01003677001 Vitis vinifera HOM05D005683 ORTHO05D006958 1.0e-08 63.9 116 31.9
ATR1132G083 Amborella trichopoda HOM05D005683 ORTHO05D006958 1.4e-08 63.5 98 33.7
arahy.Tifrunner.gnm1.ann1.YX67LP Arachis hypogaea HOM05D005683 ORTHO05D006958 1.8e-08 63.2 116 31.9
arahy.Tifrunner.gnm1.ann1.1EQ2T2 Arachis hypogaea HOM05D005683 ORTHO05D006958 2.3e-08 62.8 116 31.9
CiPaw.10G115800 Carya illinoinensis HOM05D005683 ORTHO05D006958 3.0e-08 62.4 116 31.0
Lalb_Chr09g0327231 Lupinus albus HOM05D005683 ORTHO05D006958 3.0e-08 62.4 116 32.8
Manes.17G032900 Manihot esculenta HOM05D005683 ORTHO05D006958 3.0e-08 62.4 113 33.6
VMungo0540G1177 Vigna mungo HOM05D005683 ORTHO05D006958 3.0e-08 62.4 117 30.8
Lalb_Chr18g0060021 Lupinus albus HOM05D005683 ORTHO05D006958 4.0e-08 62.0 116 30.2
BcaC05g28615 Brassica carinata HOM05D000414 ORTHO05D000276 5.2e-08 61.6 74 41.9
A05p31180 Brassica napus HOM05D000414 ORTHO05D000276 5.2e-08 61.6 74 41.9
C05p47200 Brassica napus HOM05D000414 ORTHO05D000276 5.2e-08 61.6 74 41.9
BolC5t33445H Brassica oleracea HOM05D000414 ORTHO05D000276 5.2e-08 61.6 74 41.9
Nitab4.5_0000649g0210 Nicotiana tabacum HOM05D005683 ORTHO05D006958 5.2e-08 61.6 115 33.9
MD05G1328900 Malus domestica HOM05D005683 ORTHO05D006958 6.7e-08 61.2 104 32.7
TPR.G36735 Trifolium pratense HOM05D005683 ORTHO05D006958 6.7e-08 61.2 116 35.3
VMungo0251G1023 Vigna mungo HOM05D005683 ORTHO05D006958 6.7e-08 61.2 116 34.5
Medtr2g011490 Medicago truncatula HOM05D005683 ORTHO05D006958 8.8e-08 60.8 116 34.5
Sabra11G0136400 Salix brachista HOM05D000414 ORTHO05D000276 8.8e-08 60.8 61 45.9
Sabra11G0148900 Salix brachista HOM05D000414 ORTHO05D000276 8.8e-08 60.8 61 45.9
SGA_v2.0_scaffold114G31992 Striga asiatica HOM05D005683 ORTHO05D006958 8.8e-08 60.8 116 31.9
MD10G1305800 Malus domestica HOM05D005683 ORTHO05D006958 1.2e-07 60.5 116 31.9
Sp3g16560 Schrenkiella parvula HOM05D000414 ORTHO05D000276 1.2e-07 60.5 74 41.9
PGSC0003DMG400022348 Solanum tuberosum HOM05D005683 ORTHO05D006958 1.2e-07 60.5 115 32.2
MSTRG.7277 Avicennia marina HOM05D005683 ORTHO05D006958 1.5e-07 60.1 116 36.2
Ca_00226_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 1.5e-07 60.1 116 34.5
Psat1g209480 Pisum sativum HOM05D005683 ORTHO05D006958 1.5e-07 60.1 116 34.5
AUR62012512 Chenopodium quinoa HOM05D005683 ORTHO05D006958 2.0e-07 59.7 69 40.6
Ca_17292_v3 Cicer arietinum L. HOM05D000414 ORTHO05D000276 2.0e-07 59.7 45 51.1
Ciclev10016376m.g Citrus clementina HOM05D005683 ORTHO05D006958 2.0e-07 59.7 116 31.0
TPR.G15376 Trifolium pratense HOM05D005683 ORTHO05D006958 2.0e-07 59.7 116 32.8
Atru.chr10.2035 Acer truncatum HOM05D005683 ORTHO05D006958 2.6e-07 59.3 116 31.0
CiPaw.09G156400 Carya illinoinensis HOM05D005683 ORTHO05D006958 2.6e-07 59.3 116 31.9
Medtr4g091550 Medicago truncatula HOM05D005683 ORTHO05D006958 2.6e-07 59.3 116 30.2
TWI38G0326 Tripterygium wilfordii HOM05D005683 ORTHO05D006958 2.6e-07 59.3 116 31.0
TAR627G0612 Trochodendron aralioides HOM05D005683 ORTHO05D006958 2.6e-07 59.3 116 31.0
CDE02G0678 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 3.3e-07 58.9 103 32.0
PSO541G3127 Papaver somniferum HOM05D005683 ORTHO05D006958 3.3e-07 58.9 116 31.0
Rhsim02G0118200 Rhododendron simsii HOM05D005683 ORTHO05D006958 3.3e-07 58.9 116 31.0
Rhsim02G0118400 Rhododendron simsii HOM05D005683 ORTHO05D006958 3.3e-07 58.9 116 31.0
Migut.H01529 Erythranthe guttata HOM05D005683 ORTHO05D006958 4.4e-07 58.5 120 32.5
Glyma.08G043500 Glycine max HOM05D000414 ORTHO05D000276 4.4e-07 58.5 59 42.4
Potri.004G026700 Populus trichocarpa HOM05D005683 ORTHO05D006958 4.4e-07 58.5 113 35.4
HPP92_000912 Vanilla planifolia HOM05D005683 ORTHO05D006958 4.4e-07 58.5 116 33.6
Ah.09g236340 Amaranthus hybridus HOM05D005683 ORTHO05D006958 5.7e-07 58.2 118 33.1
CAN.G424.37 Capsicum annuum HOM05D005683 ORTHO05D006958 5.7e-07 58.2 115 33.0
Dinv40458 Davidia involucrata HOM05D005683 ORTHO05D006958 5.7e-07 58.2 117 30.8
Eucgr.E03677 Eucalyptus grandis HOM05D005683 ORTHO05D006958 5.7e-07 58.2 116 32.8
Gorai.002G175100 Gossypium raimondii HOM05D000414 ORTHO05D000276 5.7e-07 58.2 56 46.4
Peaxi162Scf01035g00114 Petunia axillaris HOM05D005683 ORTHO05D006958 5.7e-07 58.2 116 32.8
Psat7g009360 Pisum sativum HOM05D000414 ORTHO05D000276 5.7e-07 58.2 45 48.9
Potri.011G040100 Populus trichocarpa HOM05D005683 ORTHO05D006958 5.7e-07 58.2 116 33.6
Prupe.4G033900 Prunus persica HOM05D005683 ORTHO05D006958 5.7e-07 58.2 116 31.9
DCAR_007094 Daucus carota HOM05D000198 ORTHO05D000763 7.5e-07 57.8 46 50.0
Eucgr.G02145 Eucalyptus grandis HOM05D000414 ORTHO05D000276 9.7e-07 57.4 128 36.7
PSO017G5555 Papaver somniferum HOM05D000414 ORTHO05D000276 9.7e-07 57.4 80 37.5
Solyc02g079390.4 Solanum lycopersicum HOM05D005683 ORTHO05D006958 9.7e-07 57.4 112 30.4
ECA236G4035 Erigeron canadensis HOM05D005683 ORTHO05D006958 1.3e-06 57.0 117 30.8
BcaB06g25890 Brassica carinata HOM05D000414 ORTHO05D000276 1.7e-06 56.6 87 37.9
Glyma.05G236300 Glycine max HOM05D000414 ORTHO05D000276 1.7e-06 56.6 45 48.9
TAR629G3446 Trochodendron aralioides HOM05D005683 ORTHO05D006958 1.7e-06 56.6 116 28.4
Lj6A804T66 Lonicera japonica HOM05D000414 ORTHO05D000276 2.2e-06 56.2 56 42.9
Medtr5g017650 Medicago truncatula HOM05D000414 ORTHO05D000276 2.2e-06 56.2 45 48.9
Sopen02g024190 Solanum pennellii HOM05D005683 ORTHO05D006958 2.2e-06 56.2 112 29.5
AL3G31760 Arabidopsis lyrata HOM05D000414 ORTHO05D000276 2.8e-06 55.8 74 39.2
BraA05t21959Z Brassica rapa HOM05D000414 ORTHO05D000276 2.8e-06 55.8 64 40.6
Cc02_g12200 Coffea canephora HOM05D005683 ORTHO05D006958 2.8e-06 55.8 97 30.9
Haze_06612 Corylus avellana HOM05D005683 ORTHO05D006958 2.8e-06 55.8 116 29.3
Medtr8g104870 Medicago truncatula HOM05D000414 ORTHO05D000276 2.8e-06 55.8 45 48.9
Nitab4.5_0005620g0030 Nicotiana tabacum HOM05D005683 ORTHO05D006958 2.8e-06 55.8 96 34.4
Phvul.002G319100 Phaseolus vulgaris HOM05D000414 ORTHO05D000276 2.8e-06 55.8 45 48.9
TAR626G0062 Trochodendron aralioides HOM05D005683 ORTHO05D006958 2.8e-06 55.8 105 31.4
CSS0013005 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 3.7e-06 55.5 121 29.8
CiPaw.05G191100 Carya illinoinensis HOM05D000414 ORTHO05D000276 3.7e-06 55.5 69 43.5
CBR_g50374 Chara braunii HOM05D005683 ORTHO05D006958 3.7e-06 55.5 152 28.9
PSO478G4071 Papaver somniferum HOM05D000414 ORTHO05D000276 3.7e-06 55.5 80 35.0
TPR.G32713 Trifolium pratense HOM05D000414 ORTHO05D000276 3.7e-06 55.5 56 44.6
HanXRQChr15g0482541 Helianthus annuus HOM05D005683 ORTHO05D006958 4.8e-06 55.1 117 30.8
MD16G1021400 Malus domestica HOM05D000414 ORTHO05D000276 4.8e-06 55.1 52 44.2
PSO478G4990 Papaver somniferum HOM05D000414 ORTHO05D000276 4.8e-06 55.1 81 34.6
PSO675G7592 Papaver somniferum HOM05D005683 ORTHO05D006958 4.8e-06 55.1 116 30.2
TPR.G7383 Trifolium pratense HOM05D000414 ORTHO05D000276 4.8e-06 55.1 45 46.7
Cc11_g08150 Coffea canephora HOM05D000414 ORTHO05D000276 6.3e-06 54.7 59 42.4
Glyma.05G236233 Glycine max HOM05D000414 ORTHO05D000276 6.3e-06 54.7 42 50.0
Lj5A146T48 Lonicera japonica HOM05D000414 ORTHO05D000276 6.3e-06 54.7 98 30.6
Lalb_Chr05g0218101 Lupinus albus HOM05D005683 ORTHO05D006958 6.3e-06 54.7 95 34.7
Oeu016269.1 Olea europaea HOM05D000414 ORTHO05D000276 6.3e-06 54.7 53 45.3
Zm00001eb323790 Zea mays HOM05D005683 ORTHO05D006958 6.3e-06 54.7 116 30.2
CARHR093820 Cardamine hirsuta HOM05D000414 ORTHO05D000276 8.2e-06 54.3 42 50.0
COL.COLO4_13089 Corchorus olitorius HOM05D000414 ORTHO05D000276 8.2e-06 54.3 42 52.4
Lsat_1_v5_gn_1_8640 Lactuca sativa HOM05D000414 ORTHO05D000276 8.2e-06 54.3 114 32.5
MBI02_g38754_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 8.2e-06 54.3 116 30.2
Manes.16G019184 Manihot esculenta HOM05D005683 ORTHO05D006958 8.2e-06 54.3 117 32.5
Phvul.002G220600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 8.2e-06 54.3 116 32.8


User provided reference genes

Program Settings