Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 1.6e-194 682.6 343 100.0
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 4.0e-68 262.7 319 44.8
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 1.2e-67 261.2 331 43.2
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 3.4e-67 259.6 315 42.9
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 5.7e-67 258.8 334 43.7
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 3.1e-65 253.1 332 42.2
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.1e-65 252.7 183 61.2
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 7.0e-65 251.9 336 40.8
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 2.7e-64 250.0 185 60.5
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 5.9e-64 248.8 183 60.7
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 1.0e-63 248.1 185 60.0
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.0e-63 248.1 189 59.8
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 1.3e-63 247.7 185 61.1
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.3e-63 247.7 189 59.8
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.3e-63 247.7 185 58.9
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 3.8e-63 246.1 333 40.2
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 6.6e-63 245.4 185 60.0
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 8.6e-63 245.0 335 39.4
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 2.5e-62 243.4 335 39.4
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 2.5e-62 243.4 185 59.5
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 2.5e-62 243.4 185 59.5
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 3.3e-62 243.0 187 57.2
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 3.3e-62 243.0 333 40.2
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 4.2e-62 242.7 189 57.1
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 5.5e-62 242.3 185 58.9
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 7.2e-62 241.9 185 58.4
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 7.2e-62 241.9 188 60.1
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 7.2e-62 241.9 185 58.9
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 9.5e-62 241.5 333 39.9
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 9.5e-62 241.5 185 58.9
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 9.5e-62 241.5 185 58.4
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 1.2e-61 241.1 185 56.8
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 1.6e-61 240.7 185 57.3
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 2.1e-61 240.4 185 58.9
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 2.8e-61 240.0 185 58.9
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 2.8e-61 240.0 185 56.8
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 3.6e-61 239.6 184 59.8
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 3.6e-61 239.6 185 57.8
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 4.7e-61 239.2 189 56.6
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 4.7e-61 239.2 333 39.9
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 4.7e-61 239.2 333 39.9
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 4.7e-61 239.2 185 57.3
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 4.7e-61 239.2 315 40.6
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 6.1e-61 238.8 185 57.8
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 6.1e-61 238.8 187 58.3
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 6.1e-61 238.8 333 40.5
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 6.1e-61 238.8 185 58.9
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 8.0e-61 238.4 185 58.9
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 8.0e-61 238.4 185 59.5
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 8.0e-61 238.4 185 58.9
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 1.0e-60 238.0 185 57.3
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 1.0e-60 238.0 185 57.3
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 1.4e-60 237.7 186 59.1
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 1.8e-60 237.3 185 56.8
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 1.8e-60 237.3 185 58.4
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 1.8e-60 237.3 333 39.6
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 3.0e-60 236.5 185 57.3
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 3.0e-60 236.5 333 39.6
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 3.0e-60 236.5 333 40.8
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 3.0e-60 236.5 190 56.8
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 5.2e-60 235.7 185 57.3
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 5.2e-60 235.7 185 57.8
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 5.2e-60 235.7 185 56.2
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 8.9e-60 235.0 189 54.5
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 8.9e-60 235.0 185 56.8
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 8.9e-60 235.0 185 57.8
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 8.9e-60 235.0 185 57.3
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 1.2e-59 234.6 185 56.2
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 1.2e-59 234.6 185 55.7
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 1.2e-59 234.6 189 55.6
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 1.2e-59 234.6 185 56.2
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 2.6e-59 233.4 318 40.3
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 2.6e-59 233.4 318 40.3
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 2.6e-59 233.4 185 56.8
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 3.4e-59 233.0 184 59.2
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 3.4e-59 233.0 185 56.2
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 3.4e-59 233.0 185 56.2
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 4.4e-59 232.6 333 39.0
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 5.7e-59 232.3 184 58.7
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 7.5e-59 231.9 185 59.5
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 9.8e-59 231.5 185 56.8
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.3e-58 231.1 318 40.3
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.3e-58 231.1 185 57.3
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 1.7e-58 230.7 185 57.3
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 2.2e-58 230.3 185 55.7
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 2.8e-58 229.9 185 55.7
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 2.8e-58 229.9 185 59.5
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 3.7e-58 229.6 318 40.6
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 4.9e-58 229.2 188 56.9
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 6.3e-58 228.8 187 58.3
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 8.3e-58 228.4 188 56.9
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 1.1e-57 228.0 185 56.2
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 1.4e-57 227.6 185 55.7
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 1.4e-57 227.6 185 56.2
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 1.4e-57 227.6 185 55.7
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 1.8e-57 227.3 185 54.1
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 2.4e-57 226.9 319 39.2
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 2.4e-57 226.9 185 56.8
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 3.2e-57 226.5 187 52.4
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 3.2e-57 226.5 188 51.1
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 4.1e-57 226.1 187 52.9
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 4.1e-57 226.1 185 55.1
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 5.4e-57 225.7 186 53.2
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 7.0e-57 225.3 185 55.7
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 9.2e-57 224.9 189 54.0
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.2e-56 224.6 186 54.3
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 1.2e-56 224.6 186 54.3
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 1.6e-56 224.2 185 53.0
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 1.6e-56 224.2 187 52.4
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 2.0e-56 223.8 185 54.6
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 2.0e-56 223.8 184 55.4
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 2.7e-56 223.4 185 54.6
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 5.9e-56 222.2 187 52.4
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 5.9e-56 222.2 201 53.7
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 1.0e-55 221.5 196 54.1
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 2.3e-55 220.3 315 40.0
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 6.6e-55 218.8 182 52.2
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.9e-54 217.2 184 54.3
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 7.3e-54 215.3 186 50.0
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 7.3e-54 215.3 187 54.0
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 2.8e-53 213.4 188 51.6
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 1.2e-51 208.0 192 52.1
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 9.8e-51 204.9 168 55.4
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.3e-50 204.5 171 52.0
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 1.2e-48 198.0 185 51.4
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 2.3e-47 193.7 156 56.4
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 5.0e-47 192.6 185 51.9
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 3.6e-45 186.4 162 53.1
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 4.0e-44 183.0 340 34.4
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 1.4e-41 174.5 183 43.2
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.4e-41 173.7 315 33.3
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 2.1e-40 170.6 240 40.8
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 7.6e-35 152.1 123 56.1
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.4e-33 147.1 126 55.6
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 1.3e-31 141.4 129 51.2
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.1e-28 131.7 107 56.1
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 2.0e-27 127.5 121 48.8
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 6.6e-23 112.5 423 26.5
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 3.3e-22 110.2 77 61.0
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 1.5e-19 101.3 89 53.9
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 1.7e-18 97.8 92 50.0
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 1.7e-18 97.8 92 50.0
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 6.0e-16 89.4 76 52.6
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 7.9e-16 89.0 92 46.7
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 1.0e-15 88.6 151 33.1
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 1.2e-11 75.1 109 39.4
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 1.9e-06 57.8 49 49.0


User provided reference genes

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