Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 2.9e-45 184.9 95 100.0
Mapoly0011s0061 Marchantia polymorpha HOM05D004945 ORTHO05D005536 1.5e-20 102.8 89 51.7
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 4.0e-18 94.7 83 53.0
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 8.8e-18 93.6 89 50.6
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 8.8e-18 93.6 89 50.6
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.2e-17 93.2 94 47.9
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 2.6e-17 92.0 92 51.1
AagrBONN_evm.TU.Sc2ySwM_228.1937 Anthoceros agrestis HOM05D004945 ORTHO05D005536 2.2e-16 89.0 76 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1844 Anthoceros agrestis HOM05D053501 ORTHO05D005536 3.0e-10 68.6 90 37.8
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 5.2e-10 67.8 84 41.7
MCO09G227 Micromonas commoda HOM05D004945 ORTHO05D005536 8.8e-10 67.0 94 38.3
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 5.7e-09 64.3 80 43.8
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 7.5e-09 63.9 81 42.0
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 7.5e-09 63.9 88 40.9
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 4.9e-08 61.2 79 39.2
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 6.3e-08 60.8 94 39.4
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 6.3e-08 60.8 80 42.5
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 6.3e-08 60.8 80 42.5
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 1.1e-07 60.1 74 40.5
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 1.1e-07 60.1 78 39.7
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 1.1e-07 60.1 94 40.4
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.4e-07 59.7 84 44.0
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 2.4e-07 58.9 80 40.0
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 2.4e-07 58.9 94 38.3
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 2.4e-07 58.9 78 38.5
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 4.1e-07 58.2 80 40.0
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 5.4e-07 57.8 80 37.5
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 5.4e-07 57.8 74 39.2
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 5.4e-07 57.8 88 37.5
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 7.0e-07 57.4 90 40.0
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 7.0e-07 57.4 83 39.8
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 9.2e-07 57.0 80 38.8
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 9.2e-07 57.0 80 38.8
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 9.2e-07 57.0 94 39.4
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 9.2e-07 57.0 80 38.8
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 1.2e-06 56.6 80 35.0
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 1.2e-06 56.6 80 35.0
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 1.2e-06 56.6 80 35.0
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 1.2e-06 56.6 80 35.0
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 1.2e-06 56.6 80 35.0
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 1.2e-06 56.6 80 38.8
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 1.2e-06 56.6 80 36.2
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 1.6e-06 56.2 80 35.0
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.6e-06 56.2 94 38.3
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 1.6e-06 56.2 75 41.3
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 1.6e-06 56.2 75 41.3
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 1.6e-06 56.2 74 43.2
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 2.0e-06 55.8 80 37.5
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 2.0e-06 55.8 80 37.5
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 2.0e-06 55.8 88 38.6
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.7e-06 55.5 94 38.3
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 2.7e-06 55.5 94 38.3
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.7e-06 55.5 75 40.0
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 2.7e-06 55.5 80 37.5
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 2.7e-06 55.5 92 37.0
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 2.7e-06 55.5 90 37.8
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 3.5e-06 55.1 80 37.5
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 3.5e-06 55.1 88 39.8
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 4.5e-06 54.7 80 37.5
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 4.5e-06 54.7 80 35.0
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 4.5e-06 54.7 75 40.0
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.5e-06 54.7 94 36.2
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 5.9e-06 54.3 81 37.0
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 5.9e-06 54.3 80 35.0
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 5.9e-06 54.3 80 35.0
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 5.9e-06 54.3 80 35.0
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 5.9e-06 54.3 80 35.0
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 5.9e-06 54.3 80 38.8
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 5.9e-06 54.3 80 38.8
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 5.9e-06 54.3 80 37.5
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 5.9e-06 54.3 94 36.2
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 5.9e-06 54.3 80 38.8
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 5.9e-06 54.3 80 36.2
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 5.9e-06 54.3 92 37.0
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 7.8e-06 53.9 80 33.8
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 7.8e-06 53.9 83 36.1
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 7.8e-06 53.9 88 37.5
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 7.8e-06 53.9 92 37.0
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 7.8e-06 53.9 85 40.0
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 7.8e-06 53.9 74 37.8
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 7.8e-06 53.9 77 37.7


User provided reference genes

Program Settings