Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 0.0e+00 1238.0 651 100.0
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 8.0e-304 1046.6 647 88.7
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 6.0e-182 641.7 366 90.2
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.4e-53 215.3 659 31.1
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 1.4e-42 178.7 548 28.8
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 1.0e-40 172.6 605 30.1
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 5.6e-39 166.8 750 26.4
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 3.1e-37 161.0 620 26.1
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 3.1e-37 161.0 586 28.3
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 5.3e-37 160.2 609 26.1
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 2.6e-36 157.9 580 27.1
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 3.4e-36 157.5 576 30.6
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 7.6e-36 156.4 586 27.3
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 9.9e-36 156.0 634 27.8
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 1.7e-35 155.2 611 26.8
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 2.2e-35 154.8 557 24.6
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 4.9e-35 153.7 606 25.7
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 1.1e-34 152.5 612 25.7
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 2.4e-34 151.4 582 26.3
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 2.4e-34 151.4 581 25.5
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 3.2e-34 151.0 612 26.6
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 1.6e-33 148.7 582 26.1
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 1.6e-33 148.7 582 26.1
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 6.0e-33 146.7 573 23.7
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 7.9e-33 146.4 600 24.8
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 2.3e-32 144.8 581 25.3
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 5.1e-32 143.7 595 26.2
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 5.1e-32 143.7 587 24.0
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 5.1e-32 143.7 588 25.2
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 8.7e-32 142.9 584 26.9
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 8.7e-32 142.9 498 33.1
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.1e-31 142.5 608 25.5
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.9e-31 141.7 563 23.6
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.9e-31 141.7 563 24.0
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 2.5e-31 141.4 611 25.4
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 3.3e-31 141.0 582 25.3
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 5.6e-31 140.2 586 24.1
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 7.4e-31 139.8 554 25.6
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 9.6e-31 139.4 464 25.4
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 1.6e-30 138.7 630 23.5
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 3.7e-30 137.5 627 25.7
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 3.7e-30 137.5 579 26.1
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 3.7e-30 137.5 577 24.6
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 4.8e-30 137.1 630 23.0
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 4.8e-30 137.1 557 25.0
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 8.1e-30 136.3 557 25.1
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.8e-29 135.2 557 24.8
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 2.4e-29 134.8 589 24.4
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 2.4e-29 134.8 624 27.9
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 3.1e-29 134.4 514 28.8
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 4.0e-29 134.0 574 24.9
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 6.9e-29 133.3 623 24.4
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.2e-28 132.5 567 26.6
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 1.5e-28 132.1 566 24.7
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 2.0e-28 131.7 621 24.8
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 2.0e-28 131.7 586 23.7
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 3.4e-28 131.0 593 23.8
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 5.8e-28 130.2 456 25.7
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 5.8e-28 130.2 456 25.7
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 9.9e-28 129.4 554 29.2
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 9.9e-28 129.4 503 24.3
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 1.3e-27 129.0 625 26.4
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 2.9e-27 127.9 602 23.4
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 3.8e-27 127.5 600 23.0
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 4.9e-27 127.1 602 23.4
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 8.4e-27 126.3 554 27.1
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.1e-26 125.9 600 23.3
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.4e-26 125.6 525 26.3
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 2.5e-26 124.8 595 23.2
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 3.2e-26 124.4 594 24.7
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 5.5e-26 123.6 582 23.4
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 7.1e-26 123.2 457 26.5
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 7.1e-26 123.2 505 24.6
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 9.3e-26 122.9 585 22.1
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 1.2e-25 122.5 591 24.5
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 1.6e-25 122.1 518 26.1
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 4.6e-25 120.6 550 23.8
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.0e-24 119.4 564 25.0
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 1.3e-24 119.0 598 22.9
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 2.3e-24 118.2 541 23.8
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 6.7e-24 116.7 582 23.2
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 8.7e-24 116.3 131 45.8
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 1.9e-23 115.2 495 23.6
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 1.9e-23 115.2 552 23.7
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 2.5e-23 114.8 550 23.6
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 3.3e-23 114.4 599 23.9
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 3.3e-23 114.4 556 23.0
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.3e-23 114.0 550 23.6
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 5.6e-23 113.6 587 23.9
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 9.6e-23 112.8 229 34.5
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 2.1e-22 111.7 637 23.7
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.8e-22 111.3 550 24.2
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 3.7e-22 110.9 124 46.0
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 4.8e-22 110.5 528 22.3
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 2.4e-21 108.2 124 44.4
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 2.4e-21 108.2 596 21.8
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 3.1e-21 107.8 501 22.6
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 3.1e-21 107.8 501 22.6
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 3.1e-21 107.8 482 23.7
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 5.3e-21 107.1 129 43.4
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 5.3e-21 107.1 592 20.8
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 6.9e-21 106.7 131 43.5
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 6.9e-21 106.7 119 43.7
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 6.9e-21 106.7 124 45.2
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 6.9e-21 106.7 120 45.0
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 6.9e-21 106.7 120 45.0
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 6.9e-21 106.7 526 23.6
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 9.0e-21 106.3 127 43.3
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 3.4e-20 104.4 551 23.8
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 5.8e-20 103.6 551 26.3
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 1.3e-19 102.4 516 22.5
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 2.2e-19 101.7 126 42.9
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.9e-19 101.3 120 43.3
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 2.9e-19 101.3 221 32.1
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 2.9e-19 101.3 557 23.9
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 2.9e-19 101.3 504 23.6
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 8.4e-19 99.8 124 42.7
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 1.1e-18 99.4 592 22.1
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 5.5e-18 97.1 100 47.0
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 7.1e-18 96.7 119 42.0
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 9.3e-18 96.3 125 40.0
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 9.3e-18 96.3 127 40.2
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.5e-17 94.4 120 43.3
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 6.0e-17 93.6 458 22.9
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 7.9e-17 93.2 108 45.4
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 7.9e-17 93.2 515 22.5
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 1.3e-16 92.4 119 41.2
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 3.0e-16 91.3 123 37.4
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 2.5e-15 88.2 108 40.7
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.6e-14 85.5 73 50.7
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 1.4e-13 82.4 120 35.8
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 5.3e-13 80.5 503 22.1
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 1.3e-11 75.9 270 29.3
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.6e-09 67.8 192 28.1
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 1.4e-08 65.9 113 34.5
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 2.3e-08 65.1 300 24.0
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 5.1e-08 63.9 169 30.2
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 8.8e-08 63.2 111 36.0
EL10Ac2g04634 Beta vulgaris HOM05D003624 ORTHO05D004188 1.1e-07 62.8 117 34.2
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 1.1e-07 62.8 111 36.0
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 1.5e-07 62.4 115 33.9
AUR62031721 Chenopodium quinoa HOM05D003624 ORTHO05D004188 1.5e-07 62.4 113 33.6
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 2.0e-07 62.0 169 29.6
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 2.0e-07 62.0 113 33.6
AUR62001070 Chenopodium quinoa HOM05D003624 ORTHO05D004188 2.5e-07 61.6 104 35.6
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 3.3e-07 61.2 111 31.5
AT1G55460 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 4.3e-07 60.8 115 34.8
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 4.3e-07 60.8 113 33.6
Thhalv10011527m.g Eutrema salsugineum HOM05D003624 ORTHO05D004188 4.3e-07 60.8 115 35.7
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 7.4e-07 60.1 107 34.6
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 9.7e-07 59.7 107 34.6
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 9.7e-07 59.7 107 34.6
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 9.7e-07 59.7 111 32.4
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 9.7e-07 59.7 113 32.7
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 9.7e-07 59.7 109 34.9
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 1.3e-06 59.3 113 32.7
Atru.chr4.2829 Acer truncatum HOM05D003624 ORTHO05D004188 1.3e-06 59.3 111 34.2
AagrBONN_evm.TU.Sc2ySwM_368.2590 Anthoceros agrestis HOM05D003624 ORTHO05D004188 1.3e-06 59.3 111 34.2
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 1.3e-06 59.3 106 36.8
AUR62032608 Chenopodium quinoa HOM05D003624 ORTHO05D004188 1.7e-06 58.9 113 32.7
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 1.7e-06 58.9 127 27.6
Prupe.1G588200 Prunus persica HOM05D003624 ORTHO05D004188 1.7e-06 58.9 115 33.9
Prupe.6G266400 Prunus persica HOM05D003624 ORTHO05D004188 1.7e-06 58.9 115 33.9
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 2.8e-06 58.2 173 27.2
Eucgr.C04375 Eucalyptus grandis HOM05D003624 ORTHO05D004188 2.8e-06 58.2 102 35.3
HanXRQChr08g0234751 Helianthus annuus HOM05D003624 ORTHO05D004188 2.8e-06 58.2 102 35.3
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 3.7e-06 57.8 107 33.6
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 3.7e-06 57.8 107 33.6
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 3.7e-06 57.8 113 31.9
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 3.7e-06 57.8 111 31.5
Sp1g41070 Schrenkiella parvula HOM05D003624 ORTHO05D004188 3.7e-06 57.8 115 33.0
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 4.8e-06 57.4 107 33.6
Peaxi162Scf00001g00045 Petunia axillaris HOM05D003624 ORTHO05D004188 4.8e-06 57.4 113 31.0
Peaxi162Scf00015g10126 Petunia axillaris HOM05D003624 ORTHO05D004188 4.8e-06 57.4 113 31.0
Prupe.2G234600 Prunus persica HOM05D003624 ORTHO05D004188 4.8e-06 57.4 115 33.9
unitig_749.g13772 Utricularia gibba HOM05D003624 ORTHO05D004188 4.8e-06 57.4 113 31.9
CSS0014624 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 6.3e-06 57.0 162 27.8
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 6.3e-06 57.0 114 33.3
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 6.3e-06 57.0 111 31.5
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 6.3e-06 57.0 111 31.5
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 6.3e-06 57.0 236 25.4
Nitab4.5_0001992g0010 Nicotiana tabacum HOM05D003624 ORTHO05D004188 8.2e-06 56.6 113 31.0
Nitab4.5_0006489g0020 Nicotiana tabacum HOM05D003624 ORTHO05D004188 8.2e-06 56.6 113 31.0


User provided reference genes

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