Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g50304 Chara braunii HOM05D020303 ORTHO05D021299 8.0e-195 683.7 380 100.0
CBR_g3150 Chara braunii HOM05D020303 ORTHO05D021299 1.4e-37 161.4 249 43.4
AagrBONN_evm.TU.Sc2ySwM_117.310 Anthoceros agrestis HOM05D020303 ORTHO05D021299 7.3e-23 112.5 225 31.6
CSS0013540 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 6.2e-22 109.4 209 32.5
PGR119G0925 Punica granatum HOM05D002318 ORTHO05D008744 1.8e-21 107.8 157 38.2
AT2G03390 Arabidopsis thaliana HOM05D002318 ORTHO05D008744 2.4e-21 107.5 157 37.6
Mapoly0003s0180 Marchantia polymorpha HOM05D020303 ORTHO05D021299 2.4e-21 107.5 150 37.3
Nitab4.5_0000334g0260 Nicotiana tabacum HOM05D002318 ORTHO05D008744 2.4e-21 107.5 157 38.2
DCAR_027449 Daucus carota HOM05D002318 ORTHO05D008744 3.1e-21 107.1 157 36.3
Carub.0005s0236 Capsella rubella HOM05D002318 ORTHO05D008744 4.0e-21 106.7 157 38.2
VMungo1215G2584 Vigna mungo HOM05D002318 ORTHO05D008744 5.3e-21 106.3 198 31.8
Pp3c7_3960 Physcomitrium patens HOM05D002318 ORTHO05D008744 6.9e-21 105.9 157 38.2
ECA233G4874 Erigeron canadensis HOM05D002318 ORTHO05D008744 9.0e-21 105.5 155 37.4
Duzib268G0798 Durio zibethinus HOM05D002318 ORTHO05D008744 1.2e-20 105.1 177 36.2
HanXRQChr12g0362851 Helianthus annuus HOM05D002318 ORTHO05D008744 1.2e-20 105.1 189 33.3
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 1.2e-20 105.1 189 33.3
PGSC0003DMG401028329 Solanum tuberosum HOM05D002318 ORTHO05D008744 1.5e-20 104.8 157 37.6
PGSC0003DMG402022110 Solanum tuberosum HOM05D002318 ORTHO05D008744 1.5e-20 104.8 157 37.6
CANSAT54G0184 Cannabis sativa HOM05D002318 ORTHO05D008744 2.0e-20 104.4 157 35.7
Sopen05g007450 Solanum pennellii HOM05D002318 ORTHO05D008744 2.0e-20 104.4 157 37.6
AL5G13100 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 2.6e-20 104.0 159 37.7
AL5G13140 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 2.6e-20 104.0 159 37.7
Ciclev10032054m.g Citrus clementina HOM05D002318 ORTHO05D008744 2.6e-20 104.0 194 33.0
Lalb_Chr17g0340981 Lupinus albus HOM05D002318 ORTHO05D008744 2.6e-20 104.0 157 36.9
Lj2g0021077 Lotus japonicus HOM05D002318 ORTHO05D008744 3.4e-20 103.6 157 38.2
Phvul.002G069400 Phaseolus vulgaris HOM05D002318 ORTHO05D008744 3.4e-20 103.6 157 36.3
Rhsim12G0076700 Rhododendron simsii HOM05D002318 ORTHO05D008744 3.4e-20 103.6 157 36.9
TWI75G0802 Tripterygium wilfordii HOM05D002318 ORTHO05D008744 3.4e-20 103.6 167 35.9
MD16G1064900 Malus domestica HOM05D002318 ORTHO05D008744 4.5e-20 103.2 157 36.9
CAN.G1340.13 Capsicum annuum HOM05D002318 ORTHO05D008744 5.8e-20 102.8 157 36.9
Solyc05g012620.4 Solanum lycopersicum HOM05D002318 ORTHO05D008744 5.8e-20 102.8 157 36.9
Actinidia19922 Actinidia chinensis HOM05D002318 ORTHO05D008744 7.6e-20 102.4 156 36.5
CARHR145730 Cardamine hirsuta HOM05D002318 ORTHO05D008744 7.6e-20 102.4 157 35.7
Glyma.02G113500 Glycine max HOM05D002318 ORTHO05D008744 7.6e-20 102.4 157 35.7
Lj6C782T15 Lonicera japonica HOM05D002318 ORTHO05D008744 9.9e-20 102.1 155 38.1
Sp2g14310 Schrenkiella parvula HOM05D002318 ORTHO05D008744 9.9e-20 102.1 184 35.3
CsaV3_6G032440 Cucumis sativus L. HOM05D002318 ORTHO05D008744 1.7e-19 101.3 159 38.4
Sc11g0002270 Simmondsia chinensis HOM05D002318 ORTHO05D008744 1.7e-19 101.3 157 36.9
GSVIVG01012177001 Vitis vinifera HOM05D002318 ORTHO05D008744 1.7e-19 101.3 159 35.8
Gorai.013G091200 Gossypium raimondii HOM05D002318 ORTHO05D008744 2.2e-19 100.9 177 34.5
Hund05860 Selenicereus undatus HOM05D002318 ORTHO05D008744 2.2e-19 100.9 159 37.1
Aqoxy3G03551 Aquilegia oxysepala HOM05D002318 ORTHO05D008744 2.9e-19 100.5 157 35.7
BcaC06g31184 Brassica carinata HOM05D002318 ORTHO05D008744 2.9e-19 100.5 159 37.1
Thhalv10004578m.g Eutrema salsugineum HOM05D002318 ORTHO05D008744 2.9e-19 100.5 159 37.1
BcaC06g34000 Brassica carinata HOM05D002318 ORTHO05D008744 4.9e-19 99.8 159 36.5
AUR62038089 Chenopodium quinoa HOM05D002318 ORTHO05D008744 4.9e-19 99.8 157 36.3
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 4.9e-19 99.8 157 35.7
Oeu021096.1 Olea europaea HOM05D002318 ORTHO05D008744 4.9e-19 99.8 207 31.4
RcHm_v2.0_Chr4g0438871 Rosa chinensis HOM05D002318 ORTHO05D008744 4.9e-19 99.8 157 36.3
arahy.Tifrunner.gnm1.ann1.T5ZGHX Arachis hypogaea HOM05D002318 ORTHO05D008744 6.4e-19 99.4 167 34.7
Eucgr.G02464 Eucalyptus grandis HOM05D002318 ORTHO05D008744 6.4e-19 99.4 157 38.2
Mapoly0001s0530 Marchantia polymorpha HOM05D002318 ORTHO05D008744 6.4e-19 99.4 157 34.4
AUR62043182 Chenopodium quinoa HOM05D002318 ORTHO05D008744 8.4e-19 99.0 157 36.3
MELO3C011434.2 Cucumis melo HOM05D002318 ORTHO05D008744 8.4e-19 99.0 159 37.7
Gohir.D13G079700 Gossypium hirsutum HOM05D002318 ORTHO05D008744 8.4e-19 99.0 177 33.9
arahy.Tifrunner.gnm1.ann1.T0481B Arachis hypogaea HOM05D002318 ORTHO05D008744 1.1e-18 98.6 167 34.7
CDE04G0061 Ceratophyllum demersum HOM05D002318 ORTHO05D008744 1.1e-18 98.6 176 31.2
Migut.L01223 Erythranthe guttata HOM05D002318 ORTHO05D008744 1.1e-18 98.6 167 32.3
AagrBONN_evm.TU.Sc2ySwM_117.1985 Anthoceros agrestis HOM05D002318 ORTHO05D008744 1.4e-18 98.2 175 33.7
FAN22G0051 Fragaria x ananassa HOM05D002318 ORTHO05D008744 1.4e-18 98.2 157 35.7
ATR0111G011 Amborella trichopoda HOM05D002318 ORTHO05D008744 1.9e-18 97.8 157 36.3
Cfa008908 Carpinus fangiana HOM05D002318 ORTHO05D008744 1.9e-18 97.8 157 35.0
Haze_11934 Corylus avellana HOM05D002318 ORTHO05D008744 1.9e-18 97.8 157 35.0
MBI16_g06774_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D008744 1.9e-18 97.8 157 35.7
SEGI_16280 Sequoiadendron giganteum HOM05D002318 ORTHO05D008744 1.9e-18 97.8 171 37.4
Thecc.02G336500 Theobroma cacao HOM05D002318 ORTHO05D008744 1.9e-18 97.8 157 36.3
Potri.010G161600 Populus trichocarpa HOM05D002318 ORTHO05D008744 2.4e-18 97.4 206 30.1
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 2.4e-18 97.4 157 34.4
Gohir.A13G079900 Gossypium hirsutum HOM05D002318 ORTHO05D008744 3.2e-18 97.1 177 33.9
C07p33850 Brassica napus HOM05D002318 ORTHO05D008744 4.2e-18 96.7 160 36.9
COL.COLO4_27936 Corchorus olitorius HOM05D002318 ORTHO05D008744 4.2e-18 96.7 157 34.4
Atru.chr11.1690 Acer truncatum HOM05D002318 ORTHO05D008744 5.4e-18 96.3 157 35.0
Os08g0172200 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 7.1e-18 95.9 159 37.1
BraA06t27203Z Brassica rapa HOM05D002318 ORTHO05D008744 9.3e-18 95.5 160 36.9
CiPaw.05G128000 Carya illinoinensis HOM05D002318 ORTHO05D008744 9.3e-18 95.5 157 34.4
SMO115G0105 Selaginella moellendorffii HOM05D002318 ORTHO05D008744 9.3e-18 95.5 156 34.0
CBR_g27967 Chara braunii HOM05D002318 ORTHO05D008744 1.2e-17 95.1 157 33.8
QL03p070830 Quercus lobata HOM05D002318 ORTHO05D008744 2.1e-17 94.4 157 35.0
THA.LOC104805183 Tarenaya hassleriana HOM05D002318 ORTHO05D008744 2.7e-17 94.0 157 33.8
Aa31LG2G7170 Aethionema arabicum HOM05D002318 ORTHO05D008744 3.5e-17 93.6 169 34.9
Manes.01G030400 Manihot esculenta HOM05D002318 ORTHO05D008744 3.5e-17 93.6 155 33.5
Cc11_g12380 Coffea canephora HOM05D002318 ORTHO05D008744 1.0e-16 92.0 157 33.8
vmacro01330 Vaccinium macrocarpon HOM05D002318 ORTHO05D008744 1.0e-16 92.0 195 29.7
PRCOL_00000845 Prasinoderma coloniale HOM05D002318 ORTHO05D008744 2.3e-16 90.9 176 32.4
Cpa.g.sc1.87 Carica papaya HOM05D002318 ORTHO05D008744 3.0e-16 90.5 157 32.5
ClCG08G010240 Citrullus lanatus HOM05D002318 ORTHO05D008744 3.9e-16 90.1 166 35.5
FAN17G2010 Fragaria x ananassa HOM05D002318 ORTHO05D008744 5.1e-16 89.7 168 33.3
FAN16G1553 Fragaria x ananassa HOM05D002318 ORTHO05D008744 2.5e-15 87.4 124 37.1
FAN12G0082 Fragaria x ananassa HOM05D002318 ORTHO05D008744 3.3e-15 87.0 153 36.6
Hma1.2p1_0354F.1_g133650 Hydrangea macrophylla HOM05D002318 ORTHO05D008744 4.3e-15 86.7 127 33.9
A06p43150 Brassica napus HOM05D002318 ORTHO05D008744 5.6e-15 86.3 135 37.8
Nn3g17371 Nelumbo nucifera HOM05D002318 ORTHO05D008744 7.4e-15 85.9 118 37.3
SalBow2G2755 Salvia bowleyana HOM05D002318 ORTHO05D008744 7.4e-15 85.9 158 34.2
Prupe.1G282000 Prunus persica HOM05D002318 ORTHO05D008744 9.6e-15 85.5 124 35.5
Cre02.g113700 Chlamydomonas reinhardtii HOM05D002318 ORTHO05D008744 2.1e-14 84.3 183 33.9
Peaxi162Scf00314g00023 Petunia axillaris HOM05D002318 ORTHO05D008744 8.1e-14 82.4 185 30.3
Actinidia31948 Actinidia chinensis HOM05D002318 ORTHO05D008744 1.4e-13 81.6 157 32.5
EL10As3g23350 Beta vulgaris HOM05D002318 ORTHO05D008744 2.4e-13 80.9 194 30.4
SGA_v2.0_scaffold16G07752 Striga asiatica HOM05D002318 ORTHO05D008744 2.4e-13 80.9 183 30.6
Ah.13g073950 Amaranthus hybridus HOM05D002318 ORTHO05D008744 4.0e-13 80.1 183 29.5
CSS0032009 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 6.9e-13 79.3 171 31.0
Dinv34114 Davidia involucrata HOM05D002318 ORTHO05D008744 2.0e-12 77.8 112 35.7
Cfa025736 Carpinus fangiana HOM05D020303 ORTHO05D021299 3.4e-12 77.0 117 35.0
FvH4_4g30500 Fragaria vesca HOM05D002318 ORTHO05D008744 5.8e-12 76.3 112 36.6
Sed0004708 Sechium edule HOM05D002318 ORTHO05D008744 7.6e-12 75.9 114 39.5
PSO591G0040 Papaver somniferum HOM05D002318 ORTHO05D008744 1.9e-07 61.2 98 34.7
Cre12.g541904 Chlamydomonas reinhardtii HOM05D020303 ORTHO05D021299 2.1e-06 57.8 54 48.1


User provided reference genes

Program Settings