Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 0.0e+00 1284.2 658 100.0
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 1.4e-53 215.3 208 53.4
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 2.7e-49 201.1 223 45.7
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 3.0e-48 197.6 227 44.9
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.1e-42 179.1 225 44.4
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.2e-42 177.2 222 44.6
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 2.1e-41 174.9 225 44.0
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 2.7e-41 174.5 224 43.3
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 3.6e-41 174.1 226 42.0
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 1.4e-40 172.2 237 42.6
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 1.4e-40 172.2 237 42.6
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.8e-40 171.8 264 38.3
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 3.9e-40 170.6 224 42.9
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 3.9e-40 170.6 222 41.0
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 5.1e-40 170.2 286 36.7
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 8.8e-40 169.5 239 42.3
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 1.5e-39 168.7 224 42.4
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 1.5e-39 168.7 251 38.2
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 2.6e-39 167.9 231 41.6
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 3.3e-39 167.5 296 36.1
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 5.7e-39 166.8 232 40.9
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 5.7e-39 166.8 271 37.3
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 5.7e-39 166.8 244 40.2
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 5.7e-39 166.8 224 42.9
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 7.4e-39 166.4 232 40.5
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 9.7e-39 166.0 289 38.8
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 9.7e-39 166.0 224 42.0
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 9.7e-39 166.0 244 40.6
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 1.3e-38 165.6 223 42.2
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 2.2e-38 164.9 222 41.0
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.8e-38 164.5 235 40.9
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 2.8e-38 164.5 222 41.0
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 2.8e-38 164.5 289 36.3
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 4.8e-38 163.7 225 40.0
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 4.8e-38 163.7 234 41.5
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 4.8e-38 163.7 223 43.5
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 4.8e-38 163.7 224 40.6
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 6.3e-38 163.3 225 40.9
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 6.3e-38 163.3 228 40.8
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 8.2e-38 162.9 227 40.1
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 8.2e-38 162.9 223 40.8
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 8.2e-38 162.9 224 42.0
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 1.1e-37 162.5 234 41.0
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.1e-37 162.5 247 40.1
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 1.1e-37 162.5 244 40.6
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.4e-37 162.2 289 36.7
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 1.8e-37 161.8 235 40.4
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 1.8e-37 161.8 229 41.5
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 1.8e-37 161.8 233 40.3
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.8e-37 161.8 224 41.1
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 1.8e-37 161.8 287 35.5
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 2.4e-37 161.4 234 40.6
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 2.4e-37 161.4 326 34.7
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 2.4e-37 161.4 264 37.9
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.4e-37 161.4 289 37.0
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 3.1e-37 161.0 235 40.4
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 3.1e-37 161.0 289 36.3
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.1e-37 161.0 289 36.3
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 3.1e-37 161.0 239 37.7
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 3.1e-37 161.0 229 41.0
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 3.1e-37 161.0 224 40.6
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 4.1e-37 160.6 233 40.3
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 4.1e-37 160.6 223 39.5
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 4.1e-37 160.6 223 41.3
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 4.1e-37 160.6 242 39.3
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 5.3e-37 160.2 223 40.8
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 5.3e-37 160.2 223 39.5
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 6.9e-37 159.8 224 41.1
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 6.9e-37 159.8 271 36.9
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 9.1e-37 159.5 227 40.5
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 9.1e-37 159.5 224 42.0
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 9.1e-37 159.5 230 40.9
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 9.1e-37 159.5 231 40.3
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.5e-36 158.7 270 37.8
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 2.0e-36 158.3 224 41.1
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.6e-36 157.9 223 40.8
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.6e-36 157.9 224 40.2
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 3.4e-36 157.5 224 40.2
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 4.5e-36 157.1 228 40.4
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 4.5e-36 157.1 228 40.4
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 5.9e-36 156.8 223 39.0
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 5.9e-36 156.8 241 40.2
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 5.9e-36 156.8 337 32.3
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 5.9e-36 156.8 231 39.4
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 5.9e-36 156.8 228 40.4
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 7.7e-36 156.4 216 39.4
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 1.0e-35 156.0 224 39.7
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.3e-35 155.6 249 39.0
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.3e-35 155.6 249 39.0
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.7e-35 155.2 347 32.0
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 1.7e-35 155.2 287 35.9
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 2.9e-35 154.5 287 36.2
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 3.8e-35 154.1 231 39.0
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 6.5e-35 153.3 223 39.0
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 8.5e-35 152.9 232 40.1
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.1e-34 152.5 253 40.3
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.1e-34 152.5 272 36.4
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 1.1e-34 152.5 224 40.6
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 3.2e-34 151.0 224 40.6
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 4.2e-34 150.6 220 39.5
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 5.5e-34 150.2 276 35.5
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 7.2e-34 149.8 244 36.9
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.1e-33 148.3 240 39.6
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.1e-33 148.3 274 33.9
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.7e-33 147.9 228 40.4
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 6.1e-33 146.7 283 34.6
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 6.1e-33 146.7 232 41.4
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 1.4e-32 145.6 246 37.4
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.4e-32 145.6 207 40.1
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.0e-32 144.4 241 39.0
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 5.2e-32 143.7 209 42.1
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 5.2e-32 143.7 224 38.4
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 6.7e-32 143.3 412 28.4
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 8.8e-32 142.9 239 37.2
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 1.5e-31 142.1 215 40.5
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.5e-31 142.1 220 39.5
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.0e-31 141.7 369 31.4
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 7.4e-31 139.8 281 33.8
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 1.7e-30 138.7 212 38.7
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 4.8e-30 137.1 212 39.2
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 4.8e-30 137.1 270 34.1
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 1.1e-29 136.0 232 35.8
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.4e-29 134.8 221 38.5
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 5.3e-29 133.7 224 37.5
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 7.0e-29 133.3 230 34.3
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 3.5e-28 131.0 210 37.1
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.2e-27 128.3 281 32.4
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 6.5e-27 126.7 248 32.7
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 6.5e-27 126.7 225 39.6
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.1e-26 125.9 163 42.9
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 1.5e-26 125.6 250 34.4
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 5.5e-26 123.6 195 36.9
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.1e-25 121.7 238 33.2
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 5.2e-24 117.1 329 27.4
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 4.4e-23 114.0 202 36.1
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 4.4e-23 114.0 239 32.2
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 1.7e-22 112.1 108 47.2
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 1.7e-22 112.1 144 44.4
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.7e-22 112.1 336 27.1
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 4.8e-22 110.5 111 48.6
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.4e-21 108.2 249 30.1
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 5.3e-21 107.1 270 29.6
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 7.7e-20 103.2 161 39.1
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 1.9e-18 98.6 268 29.1
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.6e-17 95.5 105 46.7
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.0e-16 92.8 158 33.5
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 5.7e-15 87.0 221 31.7
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 4.8e-14 84.0 158 34.8
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 7.0e-13 80.1 216 31.0
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 2.0e-12 78.6 85 47.1
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 1.3e-11 75.9 65 53.8
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 1.3e-11 75.9 65 53.8
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 2.9e-11 74.7 65 52.3
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 8.6e-11 73.2 81 45.7
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.2e-09 69.3 138 32.6
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 1.8e-08 65.5 107 35.5
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 4.0e-08 64.3 60 51.7
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 4.0e-08 64.3 129 32.6
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 2.0e-07 62.0 51 54.9
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 4.4e-07 60.8 109 38.5


User provided reference genes

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