Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 1.0e-243 846.3 408 100.0
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 2.8e-113 412.9 331 56.5
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 4.8e-113 412.1 331 56.8
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 2.4e-112 409.8 331 56.5
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 1.5e-111 407.1 367 52.3
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 2.0e-111 406.8 331 55.9
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 2.0e-111 406.8 331 55.9
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 3.5e-111 406.0 331 56.2
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 3.5e-111 406.0 359 52.4
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 3.5e-111 406.0 331 54.7
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 3.5e-111 406.0 331 54.7
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 3.5e-111 406.0 331 54.7
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 1.3e-110 404.1 373 52.0
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 3.8e-110 402.5 340 54.1
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 3.8e-110 402.5 331 53.8
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 5.0e-110 402.1 331 54.4
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 6.5e-110 401.7 331 54.4
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 6.5e-110 401.7 408 48.5
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 6.5e-110 401.7 349 52.4
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 6.5e-110 401.7 371 52.8
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 1.4e-109 400.6 361 52.4
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 1.9e-109 400.2 339 54.9
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 2.5e-109 399.8 331 55.3
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 2.5e-109 399.8 337 54.3
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 4.2e-109 399.1 357 53.8
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 4.2e-109 399.1 337 54.9
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 7.2e-109 398.3 331 53.8
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 9.4e-109 397.9 362 51.4
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 1.6e-108 397.1 345 53.9
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 2.1e-108 396.7 339 54.0
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 3.6e-108 396.0 334 55.1
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 3.6e-108 396.0 334 55.1
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 3.6e-108 396.0 334 55.1
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 6.1e-108 395.2 334 54.8
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 6.1e-108 395.2 334 54.8
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 6.1e-108 395.2 353 51.8
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 6.1e-108 395.2 357 53.2
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 8.0e-108 394.8 334 54.5
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 8.0e-108 394.8 331 54.4
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 8.0e-108 394.8 337 54.6
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 1.0e-107 394.4 337 53.1
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 1.8e-107 393.7 372 50.5
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 1.8e-107 393.7 372 50.8
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.8e-107 393.7 357 53.2
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 1.8e-107 393.7 337 54.3
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 2.3e-107 393.3 378 51.1
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 3.0e-107 392.9 331 54.4
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 3.9e-107 392.5 339 53.1
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 3.9e-107 392.5 356 51.7
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 5.2e-107 392.1 337 53.1
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 6.7e-107 391.7 331 53.5
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 6.7e-107 391.7 337 54.3
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 8.8e-107 391.3 350 52.3
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 8.8e-107 391.3 366 50.5
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 8.8e-107 391.3 331 54.1
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 8.8e-107 391.3 337 52.8
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 1.5e-106 390.6 363 51.2
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 1.5e-106 390.6 372 50.3
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 1.5e-106 390.6 337 51.9
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.5e-106 390.6 337 54.0
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 1.5e-106 390.6 337 53.4
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 2.0e-106 390.2 368 50.0
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 2.6e-106 389.8 372 50.3
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 2.6e-106 389.8 331 54.1
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 2.6e-106 389.8 331 53.8
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 3.3e-106 389.4 337 53.7
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 4.4e-106 389.0 345 53.3
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 4.4e-106 389.0 331 53.5
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 4.4e-106 389.0 336 54.5
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 5.7e-106 388.7 345 53.3
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 5.7e-106 388.7 339 52.5
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 5.7e-106 388.7 345 52.8
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 7.4e-106 388.3 339 51.6
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 7.4e-106 388.3 333 54.4
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 1.3e-105 387.5 345 52.5
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 1.7e-105 387.1 345 52.5
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 1.7e-105 387.1 364 50.3
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 2.2e-105 386.7 400 47.5
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.2e-105 386.7 337 51.9
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 2.2e-105 386.7 375 50.1
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 2.8e-105 386.3 334 53.9
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.8e-105 386.3 337 51.9
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 3.7e-105 386.0 331 52.9
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 4.8e-105 385.6 337 51.3
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 4.8e-105 385.6 331 51.4
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 4.8e-105 385.6 370 48.9
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 6.3e-105 385.2 345 51.9
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 6.3e-105 385.2 331 53.5
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 8.2e-105 384.8 345 52.5
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 8.2e-105 384.8 361 51.0
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 8.2e-105 384.8 371 50.1
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 1.1e-104 384.4 345 52.8
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 1.1e-104 384.4 380 48.2
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 1.8e-104 383.6 357 51.5
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 1.8e-104 383.6 361 49.6
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 1.8e-104 383.6 331 53.2
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 2.4e-104 383.3 364 50.3
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 4.1e-104 382.5 330 53.3
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 5.3e-104 382.1 337 53.1
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 5.3e-104 382.1 367 49.3
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 7.0e-104 381.7 334 53.0
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 9.1e-104 381.3 339 51.6
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 1.2e-103 380.9 381 48.0
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 1.2e-103 380.9 354 50.6
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 2.0e-103 380.2 359 50.1
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 3.5e-103 379.4 332 51.8
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 7.7e-103 378.3 364 49.5
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 1.3e-102 377.5 376 48.4
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 1.3e-102 377.5 349 50.1
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 1.7e-102 377.1 341 52.8
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 3.8e-102 375.9 381 48.0
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 8.5e-102 374.8 389 47.0
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 1.1e-101 374.4 338 52.7
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 1.5e-101 374.0 365 49.3
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 5.5e-101 372.1 392 46.4
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 7.2e-101 371.7 330 52.1
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 2.1e-100 370.2 331 52.0
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 2.1e-100 370.2 387 47.3
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 8.0e-100 368.2 333 52.0
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 5.7e-98 362.1 316 53.2
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 6.3e-97 358.6 368 49.2
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 8.3e-97 358.2 355 48.5
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 1.8e-96 357.1 358 50.0
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 3.5e-95 352.8 329 48.6
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 2.5e-93 346.7 331 50.2
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 5.7e-90 335.5 340 48.8
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 1.8e-88 330.5 335 47.8
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 2.4e-88 330.1 293 52.2
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 3.3e-85 319.7 330 47.9
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 1.6e-84 317.4 299 48.8
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 3.6e-84 316.2 243 58.0
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 8.9e-83 311.6 273 53.1
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 4.3e-77 292.7 330 43.0
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 5.6e-77 292.4 304 47.4
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 3.2e-72 276.6 328 43.3
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 7.0e-72 275.4 232 51.7
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 3.2e-48 196.8 144 62.5
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 1.0e-46 191.8 285 38.2
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 2.0e-42 177.6 231 41.1
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 4.6e-39 166.4 126 57.9
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 6.7e-30 136.0 163 36.2
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 1.9e-29 134.4 163 36.2
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.2e-26 125.2 136 47.8
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.3e-25 121.7 88 60.2
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 3.2e-24 117.1 85 62.4
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 9.6e-21 105.5 154 38.3
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 3.7e-20 103.6 96 54.2
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 1.3e-14 85.1 71 47.9
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 5.1e-14 83.2 56 60.7
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 4.5e-10 70.1 82 39.0


User provided reference genes

Program Settings