Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 3.2e-215 751.5 395 100.0
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 2.0e-71 273.9 391 43.5
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 3.5e-68 263.1 398 39.9
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 1.3e-67 261.2 395 39.0
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 5.1e-67 259.2 385 40.8
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.1e-66 258.1 398 39.7
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 3.3e-66 256.5 392 39.3
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 4.3e-66 256.1 388 40.5
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 9.5e-66 255.0 388 39.9
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 1.6e-65 254.2 391 38.4
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 1.6e-65 254.2 386 39.6
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 2.8e-65 253.4 398 38.2
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 3.6e-65 253.1 388 39.9
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 3.6e-65 253.1 396 38.9
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 3.6e-65 253.1 395 39.0
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 4.7e-65 252.7 388 38.4
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 6.2e-65 252.3 387 40.1
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 8.1e-65 251.9 390 39.0
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 8.1e-65 251.9 390 39.0
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 1.4e-64 251.1 409 39.6
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 4.0e-64 249.6 385 41.0
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 5.2e-64 249.2 387 39.5
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 6.8e-64 248.8 386 38.9
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 8.9e-64 248.4 388 39.2
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 1.2e-63 248.1 391 39.4
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 2.6e-63 246.9 389 40.4
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 2.6e-63 246.9 395 37.7
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 2.6e-63 246.9 397 37.5
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 2.6e-63 246.9 386 39.1
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 3.4e-63 246.5 388 39.2
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 5.8e-63 245.7 388 37.9
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 7.5e-63 245.4 391 38.9
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 7.5e-63 245.4 386 39.1
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 7.5e-63 245.4 396 38.6
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 9.9e-63 245.0 397 38.3
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 9.9e-63 245.0 397 37.8
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.7e-62 244.2 387 38.5
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.2e-62 243.8 395 38.5
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.9e-62 243.4 386 37.8
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 3.7e-62 243.0 388 37.9
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 4.9e-62 242.7 388 37.9
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 6.4e-62 242.3 388 37.6
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 6.4e-62 242.3 391 39.9
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 6.4e-62 242.3 398 37.2
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 8.3e-62 241.9 388 37.9
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 8.3e-62 241.9 388 37.9
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 8.3e-62 241.9 403 37.7
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.1e-61 241.5 395 37.0
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 1.1e-61 241.5 388 37.4
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.1e-61 241.5 386 38.6
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 1.1e-61 241.5 386 37.8
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 1.4e-61 241.1 388 37.4
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.4e-61 241.1 386 37.6
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.4e-61 241.1 386 37.6
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 1.9e-61 240.7 388 37.9
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 3.2e-61 240.0 388 39.7
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 3.2e-61 240.0 386 37.6
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 5.4e-61 239.2 388 37.4
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 5.4e-61 239.2 388 37.6
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 7.1e-61 238.8 390 37.2
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 7.1e-61 238.8 388 35.8
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 1.2e-60 238.0 384 37.8
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 1.2e-60 238.0 395 36.7
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 1.6e-60 237.7 395 40.0
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 1.6e-60 237.7 398 36.7
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 2.7e-60 236.9 391 36.8
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 3.5e-60 236.5 385 36.6
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 3.5e-60 236.5 385 37.4
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.6e-60 236.1 388 37.6
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 4.6e-60 236.1 403 37.5
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 1.0e-59 235.0 385 36.6
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.0e-59 235.0 386 37.0
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.0e-59 235.0 386 37.3
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.3e-59 234.6 391 39.4
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 1.7e-59 234.2 381 38.1
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 2.3e-59 233.8 387 37.7
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 3.9e-59 233.0 398 39.2
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 8.6e-59 231.9 398 37.2
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.1e-58 231.5 394 36.0
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 1.9e-58 230.7 403 35.7
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.3e-58 229.6 394 35.8
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 5.6e-58 229.2 390 36.9
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 7.3e-58 228.8 390 36.9
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 9.5e-58 228.4 397 39.5
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 9.5e-58 228.4 395 38.5
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.2e-57 228.0 388 37.1
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 1.2e-57 228.0 399 38.8
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 1.6e-57 227.6 398 38.2
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.6e-57 227.6 394 35.5
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 1.6e-57 227.6 386 36.0
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.6e-57 227.6 390 36.9
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 2.1e-57 227.3 386 35.5
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 4.7e-57 226.1 385 36.6
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 6.2e-57 225.7 387 35.7
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 2.4e-56 223.8 386 38.9
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 2.4e-56 223.8 389 33.9
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 3.1e-56 223.4 388 36.3
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 4.0e-56 223.0 375 37.3
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 6.8e-56 222.2 411 36.5
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 1.2e-55 221.5 396 37.6
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.5e-55 221.1 398 36.7
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 2.0e-55 220.7 397 39.5
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 2.0e-55 220.7 396 39.4
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 3.4e-55 219.9 396 37.6
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 3.4e-55 219.9 393 35.9
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 4.4e-55 219.5 375 38.1
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 9.9e-55 218.4 397 39.0
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.7e-54 217.6 388 37.6
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.7e-54 217.6 390 34.6
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.4e-53 214.5 400 36.8
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 1.9e-53 214.2 390 38.2
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 2.4e-53 213.8 396 37.6
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 4.2e-53 213.0 380 36.6
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 1.2e-52 211.5 396 37.1
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 1.2e-52 211.5 396 37.1
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 2.7e-52 210.3 394 38.1
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 2.7e-52 210.3 391 38.6
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 4.6e-52 209.5 391 38.4
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 2.3e-51 207.2 396 36.1
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 5.1e-51 206.1 389 38.3
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.1e-50 204.9 164 52.4
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 7.3e-50 202.2 523 31.2
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 9.6e-50 201.8 210 47.6
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.1e-49 200.7 395 34.7
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 2.1e-49 200.7 398 33.9
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 1.2e-47 194.9 396 35.1
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 1.5e-47 194.5 174 47.7
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 3.4e-47 193.4 391 36.1
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 4.4e-47 193.0 416 33.7
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 1.1e-45 188.3 363 34.7
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.9e-45 187.6 371 33.7
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.2e-45 186.8 422 32.5
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 4.2e-45 186.4 355 34.9
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 7.1e-45 185.7 353 35.1
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 7.8e-44 182.2 162 50.0
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 3.3e-42 176.8 373 35.7
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 4.8e-41 172.9 402 31.8
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 6.2e-41 172.6 435 31.7
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.4e-40 171.4 371 34.0
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 1.8e-40 171.0 192 43.8
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 9.0e-40 168.7 352 32.1
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 3.8e-38 163.3 417 30.7
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 4.2e-37 159.8 122 54.9
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 6.2e-33 146.0 128 48.4
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.9e-30 137.1 135 47.4
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.0e-27 128.6 393 29.5
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 4.0e-24 116.7 359 30.6
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.7e-22 111.3 86 48.8
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.6e-20 104.8 117 42.7
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 5.1e-19 99.8 71 59.2
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 7.9e-12 75.9 122 40.2
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 3.9e-11 73.6 118 42.4
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.1e-10 72.0 118 40.7
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.3e-10 70.1 134 36.6
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 1.7e-09 68.2 120 40.8
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 5.0e-06 56.6 278 26.3
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 5.0e-06 56.6 278 26.3


User provided reference genes

Program Settings