Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g49667 Chara braunii HOM05D006103 ORTHO05D007468 2.3e-182 642.5 421 100.0
Pp3c16_2730 Physcomitrium patens HOM05D006103 ORTHO05D007468 4.1e-51 206.5 415 40.5
SEGI_16450 Sequoiadendron giganteum HOM05D006103 ORTHO05D007468 4.0e-46 189.9 412 34.0
Cpa.g.sc98.70 Carica papaya HOM05D006103 ORTHO05D007468 7.6e-45 185.7 413 31.2
Oeu054287.1 Olea europaea HOM05D006103 ORTHO05D007468 9.2e-43 178.7 411 36.3
Gorai.004G191100 Gossypium raimondii HOM05D006103 ORTHO05D007468 2.1e-42 177.6 414 33.3
Atru.chr9.1156 Acer truncatum HOM05D006103 ORTHO05D007468 2.7e-42 177.2 414 29.0
arahy.Tifrunner.gnm1.ann1.GKQN4T Arachis hypogaea HOM05D006103 ORTHO05D007468 2.7e-42 177.2 422 34.4
Gohir.D08G182200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 2.7e-42 177.2 414 33.3
SGA_v2.0_scaffold20G09256 Striga asiatica HOM05D006103 ORTHO05D007468 4.6e-42 176.4 415 34.9
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 7.8e-42 175.6 415 37.1
Eucgr.E00334 Eucalyptus grandis HOM05D006103 ORTHO05D007468 1.3e-41 174.9 414 37.9
BraA02t08094Z Brassica rapa HOM05D006103 ORTHO05D007468 2.3e-41 174.1 411 32.4
CiPaw.11G084400 Carya illinoinensis HOM05D006103 ORTHO05D007468 2.3e-41 174.1 413 35.6
A02p30800 Brassica napus HOM05D006103 ORTHO05D007468 6.6e-41 172.6 411 32.4
MBI04_g46823_MAGBIO Magnolia biondii HOM05D006103 ORTHO05D007468 6.6e-41 172.6 406 36.5
MD04G1054200 Malus domestica HOM05D006103 ORTHO05D007468 6.6e-41 172.6 420 35.7
MELO3C013891.2 Cucumis melo HOM05D006103 ORTHO05D007468 8.7e-41 172.2 410 40.2
Thhalv10000969m.g Eutrema salsugineum HOM05D006103 ORTHO05D007468 8.7e-41 172.2 411 29.0
Gohir.A08G162200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 8.7e-41 172.2 414 32.4
Duzib205G0801 Durio zibethinus HOM05D006103 ORTHO05D007468 1.1e-40 171.8 414 29.7
Carub.0008s0066 Capsella rubella HOM05D006103 ORTHO05D007468 1.5e-40 171.4 411 34.1
GSVIVG01013285001 Vitis vinifera HOM05D006103 ORTHO05D007468 1.5e-40 171.4 193 46.6
vmacro00388 Vaccinium macrocarpon HOM05D006103 ORTHO05D007468 2.5e-40 170.6 414 33.8
CANSAT21G0053 Cannabis sativa HOM05D006103 ORTHO05D007468 3.3e-40 170.2 404 36.6
Dinv25153 Davidia involucrata HOM05D006103 ORTHO05D007468 4.3e-40 169.9 408 33.6
Sp2g11900 Schrenkiella parvula HOM05D006103 ORTHO05D007468 4.3e-40 169.9 411 31.9
CSS0016826 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 5.6e-40 169.5 411 35.3
PGR042G3635 Punica granatum HOM05D006103 ORTHO05D007468 5.6e-40 169.5 421 36.8
ClCG10G002100 Citrullus lanatus HOM05D006103 ORTHO05D007468 7.3e-40 169.1 412 33.3
BcaC03g16934 Brassica carinata HOM05D006103 ORTHO05D007468 9.6e-40 168.7 413 29.3
Sabra01G0119800 Salix brachista HOM05D006103 ORTHO05D007468 9.6e-40 168.7 414 32.4
C02p48360 Brassica napus HOM05D006103 ORTHO05D007468 1.2e-39 168.3 413 29.1
BolC2t10867H Brassica oleracea HOM05D006103 ORTHO05D007468 1.2e-39 168.3 413 29.1
CsaV3_3G002190 Cucumis sativus L. HOM05D006103 ORTHO05D007468 1.2e-39 168.3 412 36.9
TWI60G1123 Tripterygium wilfordii HOM05D006103 ORTHO05D007468 1.2e-39 168.3 414 31.9
AL8G11110 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 1.6e-39 167.9 418 33.7
Lj8A286T53 Lonicera japonica HOM05D006103 ORTHO05D007468 1.6e-39 167.9 408 33.8
Lj4g0004061 Lotus japonicus HOM05D006103 ORTHO05D007468 1.6e-39 167.9 427 34.2
PSO063G5173 Papaver somniferum HOM05D006103 ORTHO05D007468 1.6e-39 167.9 406 35.5
Potri.001G149800 Populus trichocarpa HOM05D006103 ORTHO05D007468 1.6e-39 167.9 408 33.8
CARHR174300 Cardamine hirsuta HOM05D006103 ORTHO05D007468 2.8e-39 167.2 413 32.0
CDE02G1890 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 2.8e-39 167.2 418 32.5
Ciclev10021261m.g Citrus clementina HOM05D006103 ORTHO05D007468 2.8e-39 167.2 414 33.6
Sc22g0001160 Simmondsia chinensis HOM05D006103 ORTHO05D007468 2.8e-39 167.2 189 45.5
QL12p008443 Quercus lobata HOM05D006103 ORTHO05D007468 4.7e-39 166.4 414 35.7
unitig_699.g19773 Utricularia gibba HOM05D006103 ORTHO05D007468 4.7e-39 166.4 412 37.4
Haze_08348 Corylus avellana HOM05D006103 ORTHO05D007468 8.1e-39 165.6 410 35.6
ATR0665G401 Amborella trichopoda HOM05D006103 ORTHO05D007468 1.1e-38 165.2 182 48.4
Glyma.05G067000 Glycine max HOM05D006103 ORTHO05D007468 1.1e-38 165.2 413 35.4
Prupe.5G053300 Prunus persica HOM05D006103 ORTHO05D007468 1.1e-38 165.2 413 32.9
Sed0003222 Sechium edule HOM05D006103 ORTHO05D007468 1.1e-38 165.2 412 33.3
Thecc.03G237900 Theobroma cacao HOM05D006103 ORTHO05D007468 1.4e-38 164.9 410 32.4
AagrBONN_evm.TU.Sc2ySwM_368.2081 Anthoceros agrestis HOM05D006103 ORTHO05D007468 3.1e-38 163.7 397 38.0
MSTRG.13771 Avicennia marina HOM05D006103 ORTHO05D007468 4.0e-38 163.3 419 28.9
C02p28550 Brassica napus HOM05D006103 ORTHO05D007468 4.0e-38 163.3 413 28.8
BolC2t08897H Brassica oleracea HOM05D006103 ORTHO05D007468 4.0e-38 163.3 413 28.8
CSS0027189 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 5.3e-38 162.9 411 34.8
Phvul.003G226000 Phaseolus vulgaris HOM05D006103 ORTHO05D007468 6.9e-38 162.5 417 35.5
HanXRQChr03g0089621 Helianthus annuus HOM05D006103 ORTHO05D007468 9.0e-38 162.2 400 33.8
RcHm_v2.0_Chr7g0206421 Rosa chinensis HOM05D006103 ORTHO05D007468 9.0e-38 162.2 411 36.0
Dinv28889 Davidia involucrata HOM05D006103 ORTHO05D007468 1.5e-37 161.4 195 42.6
BcaC03g15262 Brassica carinata HOM05D006103 ORTHO05D007468 2.6e-37 160.6 411 29.0
AUR62007192 Chenopodium quinoa HOM05D006103 ORTHO05D007468 2.6e-37 160.6 418 28.0
FvH4_5g20690 Fragaria vesca HOM05D006103 ORTHO05D007468 2.6e-37 160.6 416 36.1
FAN04G1103 Fragaria x ananassa HOM05D006103 ORTHO05D007468 2.6e-37 160.6 416 34.9
FAN18G2558 Fragaria x ananassa HOM05D006103 ORTHO05D007468 2.6e-37 160.6 416 36.3
AT5G47090 Arabidopsis thaliana HOM05D006103 ORTHO05D007468 3.4e-37 160.2 409 33.3
FAN08G0488 Fragaria x ananassa HOM05D006103 ORTHO05D007468 3.4e-37 160.2 416 34.1
Actinidia03414 Actinidia chinensis HOM05D006103 ORTHO05D007468 4.4e-37 159.8 407 32.4
FAN13G0941 Fragaria x ananassa HOM05D006103 ORTHO05D007468 4.4e-37 159.8 416 34.6
Lalb_Chr16g0386381 Lupinus albus HOM05D006103 ORTHO05D007468 4.4e-37 159.8 426 32.2
Migut.E01036 Erythranthe guttata HOM05D006103 ORTHO05D007468 5.8e-37 159.5 419 29.1
Migut.E01310 Erythranthe guttata HOM05D006103 ORTHO05D007468 5.8e-37 159.5 419 29.1
Manes.17G024600 Manihot esculenta HOM05D006103 ORTHO05D007468 9.9e-37 158.7 409 31.1
VMungo0251G0880 Vigna mungo HOM05D006103 ORTHO05D007468 9.9e-37 158.7 413 32.4
CANSAT21G0160 Cannabis sativa HOM05D001479 ORTHO05D007468 1.3e-36 158.3 191 44.5
Lj8C280G0 Lonicera japonica HOM05D006103 ORTHO05D007468 2.2e-36 157.5 408 28.9
CANSAT21G1035 Cannabis sativa HOM05D006103 ORTHO05D007468 2.9e-36 157.1 185 43.8
Sopen06g021130 Solanum pennellii HOM05D006103 ORTHO05D007468 4.9e-36 156.4 413 33.4
Aqoxy3G02600 Aquilegia oxysepala HOM05D006103 ORTHO05D007468 6.4e-36 156.0 409 32.8
DCAR_004514 Daucus carota HOM05D006103 ORTHO05D007468 1.4e-35 154.8 414 35.5
Lsat_1_v5_gn_6_94780 Lactuca sativa HOM05D006103 ORTHO05D007468 1.4e-35 154.8 410 31.5
Nitab4.5_0000506g0180 Nicotiana tabacum HOM05D006103 ORTHO05D007468 1.4e-35 154.8 412 34.7
SHI07660 Sapria himalayana HOM05D006103 ORTHO05D007468 1.9e-35 154.5 194 41.8
Cc08_g11160 Coffea canephora HOM05D006103 ORTHO05D007468 2.4e-35 154.1 408 31.4
Solyc06g060990.4 Solanum lycopersicum HOM05D006103 ORTHO05D007468 3.2e-35 153.7 413 33.2
SMO171G0121 Selaginella moellendorffii HOM05D006103 ORTHO05D007468 7.1e-35 152.5 175 47.4
PGSC0003DMG400026583 Solanum tuberosum HOM05D006103 ORTHO05D007468 9.3e-35 152.1 406 35.2
CAN.G422.12 Capsicum annuum HOM05D006103 ORTHO05D007468 1.6e-34 151.4 413 31.7
Ca_22022_v3 Cicer arietinum L. HOM05D006103 ORTHO05D007468 4.6e-34 149.8 413 29.3
Aa31LG9G5870 Aethionema arabicum HOM05D006103 ORTHO05D007468 7.8e-34 149.1 432 33.8
Medtr4g099190 Medicago truncatula HOM05D006103 ORTHO05D007468 5.1e-33 146.4 413 34.9
HPP92_014398 Vanilla planifolia HOM05D006103 ORTHO05D007468 5.1e-33 146.4 187 43.3
Os06g0139700 Oryza sativa ssp. japonica HOM05D006103 ORTHO05D007468 2.5e-32 144.1 413 30.5
Hund11307 Selenicereus undatus HOM05D006103 ORTHO05D007468 9.6e-32 142.1 360 34.7
BolC8t50609H Brassica oleracea HOM05D006103 ORTHO05D007468 2.1e-31 141.0 164 43.3
Zm00001eb377550 Zea mays HOM05D006103 ORTHO05D007468 4.8e-31 139.8 426 27.7
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.1e-30 138.7 387 27.1
Rhsim04G0176100 Rhododendron simsii HOM05D006103 ORTHO05D007468 2.4e-30 137.5 357 33.9
CDE11G0859 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 6.9e-30 136.0 360 33.3
EL10Ac5g12236 Beta vulgaris HOM05D006103 ORTHO05D007468 7.6e-29 132.5 422 28.4
C08p30000 Brassica napus HOM05D006103 ORTHO05D007468 2.2e-28 131.0 139 43.9
Psat4g074520 Pisum sativum HOM05D006103 ORTHO05D007468 3.8e-28 130.2 413 25.9
Peaxi162Scf00190g00616 Petunia axillaris HOM05D006103 ORTHO05D007468 4.9e-28 129.8 357 35.6
BcaC07g39778 Brassica carinata HOM05D006103 ORTHO05D007468 3.2e-27 127.1 411 28.5
Lj8A284T15 Lonicera japonica HOM05D006103 ORTHO05D007468 3.9e-25 120.2 137 42.3
MCO11G792 Micromonas commoda HOM05D006103 ORTHO05D007468 1.3e-20 105.1 421 26.6
Nitab4.5_0013289g0030 Nicotiana tabacum HOM05D006103 ORTHO05D007468 1.2e-18 98.6 118 44.1
TPR.G25737 Trifolium pratense HOM05D006103 ORTHO05D007468 4.6e-18 96.7 413 28.8
SHI06573 Sapria himalayana HOM05D006103 ORTHO05D007468 4.3e-16 90.1 124 38.7
Hma1.2p1_1672F.1_g296810 Hydrangea macrophylla HOM05D006103 ORTHO05D007468 1.5e-13 81.6 302 27.5
AUR62018811 Chenopodium quinoa HOM05D006103 ORTHO05D007468 4.9e-12 76.6 304 24.0
Cre03.g170100 Chlamydomonas reinhardtii HOM05D006103 ORTHO05D007468 4.2e-11 73.6 460 28.3
Actinidia02205 Actinidia chinensis HOM05D006103 ORTHO05D007468 4.6e-10 70.1 68 54.4
Cfa012348 Carpinus fangiana HOM05D006103 ORTHO05D007468 8.7e-09 65.9 53 52.8
Lj8C284T4 Lonicera japonica HOM05D006103 ORTHO05D007468 7.4e-08 62.8 51 49.0
RcHm_v2.0_Chr4g0446321 Rosa chinensis HOM05D006103 ORTHO05D007468 7.4e-08 62.8 53 52.8
COL.COLO4_06694 Corchorus olitorius HOM05D006103 ORTHO05D007468 2.8e-07 60.8 72 41.7
RcHm_v2.0_Chr6g0308851 Rosa chinensis HOM05D006103 ORTHO05D007468 4.8e-07 60.1 54 53.7
Carub.0008s0069 Capsella rubella HOM05D006103 ORTHO05D007468 2.4e-06 57.8 54 50.0
AL8G11000 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 9.0e-06 55.8 46 54.3


User provided reference genes

Program Settings