Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 0.0e+00 1233.4 653 100.0
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 2.3e-189 666.4 601 60.2
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 1.1e-180 637.5 607 56.5
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 5.1e-173 612.1 611 55.3
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 2.9e-168 596.3 608 53.8
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 8.4e-168 594.7 611 54.2
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 1.3e-163 580.9 609 53.0
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 4.8e-163 578.9 597 53.4
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 2.2e-160 570.1 617 50.7
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.1e-159 567.8 599 53.4
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 1.9e-159 567.0 608 50.8
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 9.3e-159 564.7 603 52.4
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 3.5e-158 562.8 608 50.8
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.9e-157 559.3 609 50.1
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 1.5e-156 557.4 616 49.4
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 1.5e-156 557.4 607 51.2
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 1.5e-156 557.4 601 50.9
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 4.3e-156 555.8 610 50.7
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 5.6e-156 555.4 608 51.0
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 1.3e-155 554.3 607 50.2
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 2.8e-155 553.1 607 50.1
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 4.8e-155 552.4 602 50.3
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 4.8e-155 552.4 644 48.0
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 8.1e-155 551.6 606 51.8
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 5.3e-154 548.9 599 50.1
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 9.0e-154 548.1 601 50.7
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 9.0e-154 548.1 607 50.2
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.2e-153 547.7 608 50.7
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 1.2e-153 547.7 619 51.1
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 1.5e-153 547.4 610 50.2
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 2.6e-153 546.6 624 49.4
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 2.6e-153 546.6 600 50.5
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 3.4e-153 546.2 600 50.2
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 4.5e-153 545.8 607 50.1
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 5.8e-153 545.4 606 49.8
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 7.6e-153 545.0 609 50.2
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 7.6e-153 545.0 604 49.7
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 1.0e-152 544.7 606 49.8
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 1.3e-152 544.3 613 49.8
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 2.2e-152 543.5 615 50.4
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 2.2e-152 543.5 607 51.2
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 2.9e-152 543.1 624 49.4
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 8.4e-152 541.6 609 48.6
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.4e-151 540.8 614 49.7
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.9e-151 540.4 597 50.1
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 2.5e-151 540.0 614 49.5
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 3.2e-151 539.7 609 49.1
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 4.2e-151 539.3 612 49.0
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 5.5e-151 538.9 614 49.7
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 5.5e-151 538.9 600 49.7
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 7.1e-151 538.5 610 49.2
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 9.3e-151 538.1 606 49.0
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 1.2e-150 537.7 612 48.9
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.2e-150 537.7 610 49.3
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 1.2e-150 537.7 611 49.6
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 1.6e-150 537.3 607 49.1
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 7.9e-150 535.0 611 49.9
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 1.3e-149 534.3 613 49.8
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 1.3e-149 534.3 631 49.0
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.3e-149 534.3 618 49.7
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 1.3e-149 534.3 622 48.6
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 1.8e-149 533.9 606 48.2
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 3.0e-149 533.1 613 48.8
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 8.7e-149 531.6 607 48.1
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 8.7e-149 531.6 596 48.7
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 1.1e-148 531.2 616 48.5
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.5e-148 530.8 618 49.5
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.9e-148 530.4 607 48.3
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 4.3e-148 529.3 612 48.5
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 4.3e-148 529.3 606 48.2
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 4.3e-148 529.3 604 48.3
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 5.6e-148 528.9 608 49.2
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 2.1e-147 526.9 620 49.4
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 2.8e-147 526.6 607 48.1
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 3.7e-147 526.2 652 46.9
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 4.8e-147 525.8 635 46.5
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 6.2e-147 525.4 605 48.9
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 8.2e-147 525.0 609 48.6
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 1.1e-146 524.6 611 48.0
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 1.4e-146 524.2 602 48.7
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 1.8e-146 523.9 607 48.1
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 1.8e-146 523.9 607 48.1
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 1.8e-146 523.9 607 48.1
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 1.8e-146 523.9 607 48.1
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.8e-146 523.9 602 48.5
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 2.4e-146 523.5 607 48.3
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 9.0e-146 521.5 608 49.2
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 9.0e-146 521.5 607 47.4
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 9.0e-146 521.5 607 47.4
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 9.0e-146 521.5 602 48.5
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 2.0e-145 520.4 619 48.0
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 5.8e-145 518.8 616 47.6
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 5.8e-145 518.8 616 47.6
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 5.8e-145 518.8 619 47.7
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 7.6e-145 518.5 602 48.7
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.2e-144 516.9 607 47.9
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 4.9e-144 515.8 609 48.3
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 6.5e-144 515.4 607 47.1
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 6.5e-144 515.4 607 47.1
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 1.2e-142 511.1 608 47.4
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 6.1e-142 508.8 606 47.9
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 3.0e-141 506.5 607 48.1
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 5.1e-141 505.8 612 46.4
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 6.7e-141 505.4 612 46.6
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 1.6e-139 500.7 611 47.5
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.8e-138 497.3 605 45.5
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 5.3e-138 495.7 611 47.0
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 9.0e-138 495.0 598 47.8
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 1.2e-137 494.6 556 49.5
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 2.2e-131 473.8 607 44.6
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 5.0e-128 462.6 607 43.7
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 1.0e-125 454.9 608 43.8
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 1.0e-125 454.9 608 43.8
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 3.3e-124 449.9 603 43.3
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 8.5e-120 435.3 584 43.5
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 5.5e-119 432.6 602 42.2
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 9.4e-119 431.8 518 48.3
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 1.2e-110 404.8 684 38.3
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 6.8e-109 399.1 608 42.1
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 3.8e-104 383.3 391 53.7
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 1.4e-98 364.8 408 49.5
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 3.4e-92 343.6 597 36.9
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 1.3e-91 341.7 398 46.2
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 5.4e-90 336.3 377 47.7
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 2.0e-89 334.3 386 47.2
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 7.3e-87 325.9 374 46.0
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 9.5e-71 272.3 530 35.5
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 7.6e-68 262.7 601 32.1
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 1.6e-65 255.0 582 30.1
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.2e-49 202.2 222 54.1
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 1.6e-41 175.3 228 40.8
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 6.0e-41 173.3 394 32.2
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 3.5e-33 147.5 396 31.1
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.2e-26 124.4 225 38.2
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.3e-24 118.2 92 62.0
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.5e-20 105.5 93 59.1
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 2.6e-20 104.8 149 40.3
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 7.7e-20 103.2 80 62.5
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 2.2e-19 101.7 143 44.1
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 1.9e-18 98.6 149 40.3
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.9e-18 98.6 80 60.0
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 1.2e-17 95.9 116 41.4
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 6.7e-16 90.1 67 68.7
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 7.2e-10 70.1 69 47.8
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 2.3e-08 65.1 241 27.8


User provided reference genes

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