Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g49506 Chara braunii HOM05D003913 ORTHO05D004803 2.6e-103 379.8 407 100.0
Mapoly0155s0005 Marchantia polymorpha HOM05D003913 ORTHO05D004803 6.2e-28 129.4 129 48.1
Pp3c14_20020 Physcomitrium patens HOM05D003913 ORTHO05D004803 2.2e-25 120.9 414 56.3
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 2.9e-25 120.6 129 54.3
SEGI_39165 Sequoiadendron giganteum HOM05D003913 ORTHO05D004803 6.4e-25 119.4 394 56.6
AagrBONN_evm.TU.Sc2ySwM_368.376 Anthoceros agrestis HOM05D003913 ORTHO05D004803 1.2e-23 115.2 413 54.2
Sed0012824 Sechium edule HOM05D003913 ORTHO05D004803 1.3e-22 111.7 394 52.0
Zm00001eb139680 Zea mays HOM05D003913 ORTHO05D004803 2.3e-22 110.9 130 53.8
Os03g0685600 Oryza sativa ssp. japonica HOM05D003913 ORTHO05D004803 6.7e-22 109.4 388 52.6
Zm00001eb362180 Zea mays HOM05D003913 ORTHO05D004803 1.1e-21 108.6 389 48.3
Oeu053831.1 Olea europaea HOM05D003913 ORTHO05D004803 9.6e-21 105.5 393 55.5
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 2.8e-20 104.0 401 31.9
BcaB03g15621 Brassica carinata HOM05D003913 ORTHO05D004803 4.0e-19 100.1 161 41.6
CiPaw.15G007000 Carya illinoinensis HOM05D003913 ORTHO05D004803 5.3e-19 99.8 387 56.3
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 6.9e-19 99.4 161 34.8
CARHR290910 Cardamine hirsuta HOM05D003913 ORTHO05D004803 6.9e-19 99.4 161 33.5
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 6.9e-19 99.4 405 27.9
BolC6t39643H Brassica oleracea HOM05D003913 ORTHO05D004803 9.0e-19 99.0 161 46.0
A07p37990 Brassica napus HOM05D003913 ORTHO05D004803 1.2e-18 98.6 161 34.2
BraA07t31364Z Brassica rapa HOM05D003913 ORTHO05D004803 1.2e-18 98.6 161 45.3
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 1.5e-18 98.2 161 34.2
MCO10G384 Micromonas commoda HOM05D003913 ORTHO05D004803 1.5e-18 98.2 123 37.4
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 2.6e-18 97.4 161 33.5
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 2.6e-18 97.4 161 33.5
C06p45910 Brassica napus HOM05D003913 ORTHO05D004803 3.4e-18 97.1 161 45.3
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 5.8e-18 96.3 161 32.9
Thhalv10018505m.g Eutrema salsugineum HOM05D003913 ORTHO05D004803 5.8e-18 96.3 161 46.0
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 7.6e-18 95.9 385 28.1
SMO347G0114 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 1.0e-17 95.5 117 41.0
AL2G31420 Arabidopsis lyrata HOM05D003913 ORTHO05D004803 1.3e-17 95.1 161 44.7
SMO343G0013 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 1.3e-17 95.1 131 37.4
GSVIVG01015205001 Vitis vinifera HOM05D003913 ORTHO05D004803 1.3e-17 95.1 155 47.7
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 1.7e-17 94.7 385 29.1
MD07G1041000 Malus domestica HOM05D003913 ORTHO05D004803 1.7e-17 94.7 405 54.1
Sp5g26870 Schrenkiella parvula HOM05D003913 ORTHO05D004803 1.7e-17 94.7 161 43.5
SpUn0020_0100 Schrenkiella parvula HOM05D003913 ORTHO05D004803 1.7e-17 94.7 161 43.5
Aqoxy1G00206 Aquilegia oxysepala HOM05D003913 ORTHO05D004803 2.2e-17 94.4 395 54.4
RcHm_v2.0_Chr6g0272901 Rosa chinensis HOM05D003913 ORTHO05D004803 2.9e-17 94.0 405 59.5
BcaC08g45753 Brassica carinata HOM05D003913 ORTHO05D004803 3.8e-17 93.6 128 39.1
ClCG08G002560 Citrullus lanatus HOM05D003913 ORTHO05D004803 3.8e-17 93.6 403 53.8
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 4.9e-17 93.2 155 43.2
Cfa018220 Carpinus fangiana HOM05D003913 ORTHO05D004803 8.4e-17 92.4 159 56.6
CDE08G0059 Ceratophyllum demersum HOM05D003913 ORTHO05D004803 8.4e-17 92.4 112 44.6
THA.LOC104826775 Tarenaya hassleriana HOM05D003913 ORTHO05D004803 8.4e-17 92.4 127 37.8
BcaC08g46615 Brassica carinata HOM05D003913 ORTHO05D004803 1.9e-16 91.3 404 52.0
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 2.5e-16 90.9 127 36.2
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 3.2e-16 90.5 133 37.6
Gohir.A09G169700 Gossypium hirsutum HOM05D003913 ORTHO05D004803 3.2e-16 90.5 390 34.4
MD02G1272000 Malus domestica HOM05D003913 ORTHO05D004803 3.2e-16 90.5 397 56.4
Nitab4.5_0000366g0190 Nicotiana tabacum HOM05D003913 ORTHO05D004803 3.2e-16 90.5 155 42.6
PGR031G2719 Punica granatum HOM05D003913 ORTHO05D004803 3.2e-16 90.5 396 55.1
FvH4_2g12470 Fragaria vesca HOM05D003913 ORTHO05D004803 4.2e-16 90.1 405 59.8
Gorai.010G129100 Gossypium raimondii HOM05D003913 ORTHO05D004803 4.2e-16 90.1 401 35.7
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 5.5e-16 89.7 399 29.3
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 7.1e-16 89.4 390 29.7
ATR0001G003 Amborella trichopoda HOM05D003913 ORTHO05D004803 9.3e-16 89.0 122 50.8
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 9.3e-16 89.0 129 36.4
TWI12G0147 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 9.3e-16 89.0 393 60.1
COL.COLO4_13734 Corchorus olitorius HOM05D003913 ORTHO05D004803 1.2e-15 88.6 162 32.1
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.2e-15 88.6 390 29.5
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 1.2e-15 88.6 155 51.6
Gohir.D06G113300 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.6e-15 88.2 401 35.4
Nn3g16733 Nelumbo nucifera HOM05D003913 ORTHO05D004803 1.6e-15 88.2 393 57.8
Potri.019G087200 Populus trichocarpa HOM05D003913 ORTHO05D004803 1.6e-15 88.2 395 53.2
SGA_v2.0_scaffold114G31919 Striga asiatica HOM05D003913 ORTHO05D004803 1.6e-15 88.2 160 36.2
Aa31LG4G8790 Aethionema arabicum HOM05D003913 ORTHO05D004803 2.1e-15 87.8 396 51.3
Cc11_g02860 Coffea canephora HOM05D003913 ORTHO05D004803 2.1e-15 87.8 394 54.8
CsaV3_6G002750 Cucumis sativus L. HOM05D003913 ORTHO05D004803 2.7e-15 87.4 400 54.0
MELO3C024997.2 Cucumis melo HOM05D003913 ORTHO05D004803 3.5e-15 87.0 400 54.0
MBI10_g42737_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 3.5e-15 87.0 155 55.5
Glyma.09G057500 Glycine max HOM05D003913 ORTHO05D004803 4.6e-15 86.7 127 35.4
CSS0047372 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 6.0e-15 86.3 397 57.7
Ciclev10008663m.g Citrus clementina HOM05D003913 ORTHO05D004803 7.9e-15 85.9 155 43.9
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 7.9e-15 85.9 162 44.4
Lsat_1_v5_gn_9_43060 Lactuca sativa HOM05D003913 ORTHO05D004803 7.9e-15 85.9 383 60.3
AUR62001664 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.0e-14 85.5 132 35.6
FAN24G0738 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.0e-14 85.5 405 59.3
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 1.0e-14 85.5 387 37.2
Manes.02G188000 Manihot esculenta HOM05D003913 ORTHO05D004803 1.0e-14 85.5 408 52.2
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.3e-14 85.1 439 47.4
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 1.3e-14 85.1 155 31.6
Prupe.8G049100 Prunus persica HOM05D003913 ORTHO05D004803 1.3e-14 85.1 405 53.3
AT1G71840 Arabidopsis thaliana HOM05D003913 ORTHO05D004803 1.8e-14 84.7 115 38.3
Dinv44716 Davidia involucrata HOM05D003913 ORTHO05D004803 1.8e-14 84.7 391 33.5
MSTRG.9615 Avicennia marina HOM05D003913 ORTHO05D004803 2.3e-14 84.3 159 33.3
Dinv13071 Davidia involucrata HOM05D003913 ORTHO05D004803 2.3e-14 84.3 391 30.7
Sed0004416 Sechium edule HOM05D003913 ORTHO05D004803 3.0e-14 84.0 397 53.9
FvH4_5g22350 Fragaria vesca HOM05D003913 ORTHO05D004803 3.9e-14 83.6 405 54.3
FAN18G2025 Fragaria x ananassa HOM05D003913 ORTHO05D004803 3.9e-14 83.6 405 54.3
FAN18G2798 Fragaria x ananassa HOM05D003913 ORTHO05D004803 3.9e-14 83.6 405 54.3
PSO541G3150 Papaver somniferum HOM05D003913 ORTHO05D004803 3.9e-14 83.6 155 41.9
RcHm_v2.0_Chr7g0210071 Rosa chinensis HOM05D003913 ORTHO05D004803 3.9e-14 83.6 405 54.6
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 3.9e-14 83.6 133 34.6
FAN08G0696 Fragaria x ananassa HOM05D003913 ORTHO05D004803 5.1e-14 83.2 405 53.8
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 5.1e-14 83.2 121 38.0
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 6.7e-14 82.8 116 37.1
Hund19608 Selenicereus undatus HOM05D003913 ORTHO05D004803 6.7e-14 82.8 436 51.1
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 6.7e-14 82.8 396 40.9
HPP92_008098 Vanilla planifolia HOM05D003913 ORTHO05D004803 1.1e-13 82.0 396 56.3
VMungo0720G0336 Vigna mungo HOM05D003913 ORTHO05D004803 1.1e-13 82.0 116 37.9
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 1.5e-13 81.6 396 43.9
ECA232G2276 Erigeron canadensis HOM05D003913 ORTHO05D004803 3.3e-13 80.5 391 56.5
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 3.3e-13 80.5 120 39.2
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 9.6e-13 79.0 395 26.3
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 9.6e-13 79.0 125 48.8
PSO675G8150 Papaver somniferum HOM05D003913 ORTHO05D004803 1.3e-12 78.6 398 57.8
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 1.6e-12 78.2 155 32.9
Rhsim04G0038100 Rhododendron simsii HOM05D003913 ORTHO05D004803 1.6e-12 78.2 120 50.0
Potri.013G116900 Populus trichocarpa HOM05D003913 ORTHO05D004803 2.1e-12 77.8 98 39.8
HanXRQChr11g0320411 Helianthus annuus HOM05D003913 ORTHO05D004803 1.1e-11 75.5 391 58.1
TWI75G1061 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 1.1e-11 75.5 393 57.8
Rhsim06G0087400 Rhododendron simsii HOM05D003913 ORTHO05D004803 1.4e-11 75.1 120 47.5
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 3.1e-11 73.9 110 32.7
Sc16g0003970 Simmondsia chinensis HOM05D003913 ORTHO05D004803 3.1e-11 73.9 125 46.4
Haze_17883 Corylus avellana HOM05D003913 ORTHO05D004803 4.1e-11 73.6 99 56.6
Actinidia29569 Actinidia chinensis HOM05D003913 ORTHO05D004803 5.3e-11 73.2 392 52.3
BolC6t38649H Brassica oleracea HOM05D003913 ORTHO05D004803 6.9e-11 72.8 124 37.1
SalBow7G2889 Salvia bowleyana HOM05D003913 ORTHO05D004803 6.9e-11 72.8 396 44.9
Migut.I00088 Erythranthe guttata HOM05D003913 ORTHO05D004803 1.2e-10 72.0 135 37.0
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.5e-10 71.6 125 34.4
Migut.J01123 Erythranthe guttata HOM05D003913 ORTHO05D004803 1.5e-10 71.6 123 38.2
Migut.D01748 Erythranthe guttata HOM05D003913 ORTHO05D004803 2.6e-10 70.9 96 37.5
Gohir.A06G109200 Gossypium hirsutum HOM05D003913 ORTHO05D004803 3.4e-10 70.5 376 29.8
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 3.8e-09 67.0 88 40.9
FAN20G2057 Fragaria x ananassa HOM05D003913 ORTHO05D004803 5.0e-09 66.6 51 54.9
TAR625G1217 Trochodendron aralioides HOM05D003913 ORTHO05D004803 5.0e-09 66.6 391 54.7
EL10Ac6g15251 Beta vulgaris HOM05D003913 ORTHO05D004803 1.1e-08 65.5 122 45.1
AUR62003626 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.9e-08 64.7 88 37.5
AUR62017935 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.9e-08 64.7 88 36.4
MBI10_g41322_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 3.2e-08 63.9 100 37.0
TAR381G0993 Trochodendron aralioides HOM05D003913 ORTHO05D004803 3.2e-08 63.9 96 35.4
Atru.chr13.1880 Acer truncatum HOM05D003913 ORTHO05D004803 4.2e-08 63.5 98 36.7
Carub.0002s1860 Capsella rubella HOM05D003913 ORTHO05D004803 4.2e-08 63.5 94 35.1
Hma1.2p1_0276F.1_g111300 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 7.1e-08 62.8 108 36.1
Lj4A109T49 Lonicera japonica HOM05D003913 ORTHO05D004803 7.1e-08 62.8 99 36.4
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 2.1e-07 61.2 97 33.0
CANSAT11G1897 Cannabis sativa HOM05D003913 ORTHO05D004803 3.5e-07 60.5 104 35.6
CANSAT25G1043 Cannabis sativa HOM05D003913 ORTHO05D004803 4.6e-07 60.1 100 36.0
Lj2C196T3 Lonicera japonica HOM05D003913 ORTHO05D004803 4.6e-07 60.1 97 35.1
Sabra13G0099000 Salix brachista HOM05D003913 ORTHO05D004803 6.1e-07 59.7 100 37.0
Eucgr.E02330 Eucalyptus grandis HOM05D003913 ORTHO05D004803 7.9e-07 59.3 101 37.6
Oeu053830.1 Olea europaea HOM05D003913 ORTHO05D004803 7.9e-07 59.3 98 33.7
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 7.9e-07 59.3 96 34.4
GSVIVG01001592001 Vitis vinifera HOM05D003913 ORTHO05D004803 1.0e-06 58.9 395 54.4
Ah.03g146560 Amaranthus hybridus HOM05D003913 ORTHO05D004803 1.3e-06 58.5 98 32.7
Sabra19G0097800 Salix brachista HOM05D003913 ORTHO05D004803 1.3e-06 58.5 100 36.0
Sabra19G0101300 Salix brachista HOM05D003913 ORTHO05D004803 1.3e-06 58.5 100 36.0
DCAR_004603 Daucus carota HOM05D000366 ORTHO05D000437 1.8e-06 58.2 88 34.1
SMO228G0026 Selaginella moellendorffii HOM05D003769 ORTHO05D004521 2.3e-06 57.8 119 37.0
PGSC0003DMG400028735 Solanum tuberosum HOM05D003913 ORTHO05D004803 2.3e-06 57.8 96 43.8
Sopen07g004790 Solanum pennellii HOM05D003913 ORTHO05D004803 3.0e-06 57.4 96 43.8
COL.COLO4_03395 Corchorus olitorius HOM05D003913 ORTHO05D004803 3.9e-06 57.0 88 42.0
Cpa.g.sc2399.1 Carica papaya HOM05D003913 ORTHO05D004803 8.7e-06 55.8 108 32.4
Ciclev10018557m.g Citrus clementina HOM05D003769 ORTHO05D004521 8.7e-06 55.8 133 28.6
DCAR_000644 Daucus carota HOM05D003913 ORTHO05D004803 8.7e-06 55.8 99 34.3
Mapoly0058s0028 Marchantia polymorpha HOM05D003769 ORTHO05D004521 8.7e-06 55.8 133 36.1


User provided reference genes

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