Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 3.7e-307 1057.4 529 100.0
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 1.8e-80 304.3 504 38.5
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 2.4e-80 303.9 489 38.7
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 3.5e-79 300.1 505 39.0
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 4.5e-79 299.7 504 38.5
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 5.0e-78 296.2 498 37.8
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 8.5e-78 295.4 513 37.8
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 1.9e-77 294.3 514 37.4
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.5e-77 293.9 502 37.5
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 3.2e-77 293.5 504 36.7
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 7.2e-77 292.4 515 36.1
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 9.4e-77 292.0 502 37.3
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 9.4e-77 292.0 502 37.3
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 1.6e-76 291.2 497 38.0
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.7e-76 290.4 510 37.1
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 2.7e-76 290.4 513 37.0
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 3.6e-76 290.0 505 36.6
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 4.7e-76 289.7 512 38.1
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 1.0e-75 288.5 510 35.9
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 1.8e-75 287.7 507 36.5
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 1.8e-75 287.7 507 36.5
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 1.8e-75 287.7 507 36.5
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 1.8e-75 287.7 516 36.6
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 3.0e-75 287.0 499 37.3
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 4.0e-75 286.6 509 38.1
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 4.0e-75 286.6 505 36.0
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 6.7e-75 285.8 502 37.5
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 6.7e-75 285.8 506 36.8
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 8.8e-75 285.4 499 37.3
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 8.8e-75 285.4 498 35.7
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 1.2e-74 285.0 530 35.3
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 2.0e-74 284.3 515 37.3
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 2.0e-74 284.3 506 35.6
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 2.6e-74 283.9 504 36.5
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 2.6e-74 283.9 494 36.8
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 3.3e-74 283.5 503 36.2
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 3.3e-74 283.5 499 36.1
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 3.3e-74 283.5 504 36.5
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 4.4e-74 283.1 499 37.3
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 7.5e-74 282.3 503 36.0
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 9.7e-74 282.0 508 36.8
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 1.3e-73 281.6 509 36.1
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 2.8e-73 280.4 511 35.2
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 3.7e-73 280.0 505 37.0
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 4.8e-73 279.6 507 35.9
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 4.8e-73 279.6 509 36.0
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 4.8e-73 279.6 513 35.7
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 4.8e-73 279.6 504 38.1
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 6.3e-73 279.3 508 35.4
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 6.3e-73 279.3 521 36.1
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 6.3e-73 279.3 504 36.7
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 8.2e-73 278.9 507 36.1
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 8.2e-73 278.9 510 35.1
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 1.1e-72 278.5 502 35.9
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 1.4e-72 278.1 506 36.0
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 1.4e-72 278.1 503 36.4
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.8e-72 277.7 510 35.7
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.8e-72 277.7 503 36.6
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 1.8e-72 277.7 510 36.7
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 1.8e-72 277.7 490 37.6
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 7.0e-72 275.8 508 36.2
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 7.0e-72 275.8 487 37.2
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 1.2e-71 275.0 503 36.0
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 1.2e-71 275.0 505 35.2
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 1.2e-71 275.0 508 35.8
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 1.6e-71 274.6 509 36.5
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 2.0e-71 274.2 475 37.5
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 2.7e-71 273.9 505 35.4
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 2.7e-71 273.9 509 35.6
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 4.5e-71 273.1 510 36.1
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 5.9e-71 272.7 504 36.1
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 7.7e-71 272.3 513 35.7
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 7.7e-71 272.3 517 36.4
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 7.7e-71 272.3 502 35.5
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.7e-70 271.2 495 36.4
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 3.8e-70 270.0 502 35.9
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.8e-70 270.0 502 36.3
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 3.8e-70 270.0 506 35.8
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 5.0e-70 269.6 504 35.3
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 8.5e-70 268.9 501 33.5
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 1.1e-69 268.5 511 35.0
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 1.1e-69 268.5 512 35.7
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.1e-69 268.5 498 34.9
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 1.5e-69 268.1 520 35.2
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 1.9e-69 267.7 512 35.9
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 1.9e-69 267.7 506 36.2
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 3.2e-69 266.9 515 35.7
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 3.2e-69 266.9 511 35.8
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 3.2e-69 266.9 550 33.8
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 4.2e-69 266.5 502 34.7
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 5.5e-69 266.2 498 35.1
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 5.5e-69 266.2 455 37.1
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 5.5e-69 266.2 500 34.8
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 8.0e-68 262.3 522 34.9
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.0e-67 261.9 486 36.2
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.8e-67 261.2 506 34.8
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 2.3e-67 260.8 515 34.4
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 3.0e-67 260.4 504 34.3
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 3.0e-67 260.4 503 35.0
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 3.0e-67 260.4 514 33.7
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 4.0e-67 260.0 514 37.0
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 4.0e-67 260.0 505 34.9
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 5.2e-67 259.6 517 34.4
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 2.0e-66 257.7 500 34.6
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 2.6e-66 257.3 508 35.4
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 7.5e-66 255.8 511 35.6
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 3.7e-65 253.4 532 33.1
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 8.3e-65 252.3 504 34.5
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 2.4e-64 250.8 508 34.8
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 3.1e-64 250.4 506 34.4
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 5.9e-63 246.1 495 33.3
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 5.9e-63 246.1 514 34.2
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 1.0e-62 245.4 517 34.2
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 3.8e-62 243.4 498 36.1
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 1.1e-61 241.9 483 36.4
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 2.5e-61 240.7 517 34.0
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 5.5e-61 239.6 517 33.8
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.2e-60 238.4 452 35.8
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 2.1e-60 237.7 500 33.6
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.6e-60 236.9 451 36.4
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 1.0e-59 235.3 506 34.0
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 2.3e-59 234.2 498 33.3
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 3.0e-59 233.8 454 37.0
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.7e-57 228.0 461 33.6
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.7e-57 228.0 461 33.6
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 2.5e-53 214.2 440 33.9
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 8.0e-52 209.1 370 36.8
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 1.4e-51 208.4 518 30.9
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 5.4e-48 196.4 494 28.5
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 3.0e-46 190.7 378 36.0
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 1.1e-45 188.7 415 33.3
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 5.6e-45 186.4 341 35.5
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.2e-44 185.3 339 36.6
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 3.6e-44 183.7 507 30.2
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 4.7e-44 183.3 139 61.9
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 8.9e-43 179.1 359 34.8
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 1.7e-41 174.9 516 29.1
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 1.2e-36 158.7 136 58.8
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 1.1e-32 145.6 381 32.0
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 9.5e-29 132.5 131 49.6
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.5e-26 125.2 288 30.9
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 3.0e-22 110.9 127 46.5
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 3.3e-21 107.5 92 52.2
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 7.3e-21 106.3 94 53.2
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 7.8e-15 86.3 64 60.9
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.7e-14 85.1 137 31.4


User provided reference genes

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