Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 0.0e+00 1701.8 931 100.0
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 2.4e-67 261.5 308 53.9
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 1.1e-64 252.7 303 52.5
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 8.8e-62 243.0 321 54.2
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 1.4e-59 235.7 309 48.2
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 3.1e-59 234.6 196 62.8
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 2.0e-58 231.9 336 47.9
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 2.7e-58 231.5 317 49.2
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 5.9e-58 230.3 302 47.7
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 1.0e-57 229.6 197 61.4
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 1.7e-57 228.8 199 61.3
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 2.3e-57 228.4 194 60.8
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 2.3e-57 228.4 196 60.7
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 2.3e-57 228.4 233 53.6
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 2.3e-57 228.4 300 47.7
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 2.9e-57 228.0 239 54.0
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 2.9e-57 228.0 201 59.7
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 3.8e-57 227.6 236 58.1
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 5.0e-57 227.3 317 47.9
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 6.5e-57 226.9 312 50.0
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 8.6e-57 226.5 327 47.4
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 8.6e-57 226.5 296 47.0
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 8.6e-57 226.5 233 53.2
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 1.9e-56 225.3 307 47.6
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 2.5e-56 224.9 233 52.8
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 3.2e-56 224.6 206 57.8
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 3.2e-56 224.6 296 47.6
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 4.2e-56 224.2 320 49.4
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 5.5e-56 223.8 205 60.0
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 5.5e-56 223.8 321 46.1
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 7.2e-56 223.4 327 47.1
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 7.2e-56 223.4 329 46.2
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 7.2e-56 223.4 343 43.7
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 9.5e-56 223.0 324 46.0
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 9.5e-56 223.0 332 47.3
CBR_g20405 Chara braunii HOM05D000003 ORTHO05D000004 1.6e-55 222.2 252 48.8
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.6e-55 222.2 234 54.3
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.6e-55 222.2 239 54.8
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 1.6e-55 222.2 234 54.3
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 1.6e-55 222.2 298 47.7
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 1.6e-55 222.2 320 44.7
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 2.1e-55 221.9 239 56.1
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 2.1e-55 221.9 323 45.8
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 2.1e-55 221.9 326 45.7
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 2.1e-55 221.9 197 59.4
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 2.8e-55 221.5 295 46.8
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 2.8e-55 221.5 202 59.9
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 3.6e-55 221.1 315 45.4
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.0e-54 219.5 321 46.4
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.0e-54 219.5 338 47.3
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.0e-54 219.5 202 59.4
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 1.4e-54 219.2 196 60.2
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 1.8e-54 218.8 163 66.9
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.8e-54 218.8 228 53.9
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 1.8e-54 218.8 327 43.4
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 2.3e-54 218.4 134 76.9
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 3.0e-54 218.0 143 73.4
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 4.0e-54 217.6 314 49.0
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 4.0e-54 217.6 309 47.9
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 4.0e-54 217.6 320 43.8
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 5.2e-54 217.2 248 50.8
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 5.2e-54 217.2 198 58.6
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 6.8e-54 216.9 315 48.6
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 8.8e-54 216.5 294 46.6
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 8.8e-54 216.5 300 46.3
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 8.8e-54 216.5 297 46.8
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.2e-53 216.1 303 45.5
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 2.0e-53 215.3 219 56.2
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 2.0e-53 215.3 202 56.4
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 2.0e-53 215.3 235 53.2
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 2.0e-53 215.3 304 49.3
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 2.0e-53 215.3 320 45.6
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 3.4e-53 214.5 202 56.4
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 3.4e-53 214.5 202 56.4
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 3.4e-53 214.5 310 43.5
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 3.4e-53 214.5 314 49.0
CBR_g51327 Chara braunii HOM05D007864 ORTHO05D000004 4.4e-53 214.2 280 46.1
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 5.7e-53 213.8 259 50.2
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 9.8e-53 213.0 317 43.5
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 9.8e-53 213.0 211 55.0
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 1.3e-52 212.6 212 55.7
CBR_g37941 Chara braunii HOM05D007864 ORTHO05D000004 1.3e-52 212.6 216 52.8
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 1.7e-52 212.2 219 55.3
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.7e-52 212.2 206 55.3
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 2.2e-52 211.8 311 46.0
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 2.8e-52 211.5 202 55.0
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 2.8e-52 211.5 238 50.8
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 2.8e-52 211.5 238 50.8
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 4.9e-52 210.7 228 52.2
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 4.9e-52 210.7 221 54.3
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 8.3e-52 209.9 237 51.1
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 8.3e-52 209.9 172 62.2
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 1.1e-51 209.5 244 52.9
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 3.1e-51 208.0 328 42.7
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 3.1e-51 208.0 237 49.8
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 7.0e-51 206.8 239 50.6
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 7.0e-51 206.8 301 44.9
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 2.7e-50 204.9 239 51.0
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 1.3e-49 202.6 191 58.1
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 1.7e-49 202.2 301 44.2
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 2.3e-49 201.8 306 46.7
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 2.9e-49 201.4 301 44.9
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 1.1e-48 199.5 315 44.1
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 2.5e-48 198.4 300 44.0
CBR_g57060 Chara braunii HOM05D007864 ORTHO05D000004 3.3e-48 198.0 327 40.1
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 2.1e-47 195.3 263 47.5
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 3.0e-46 191.4 323 40.6
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 2.9e-44 184.9 238 46.2
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 2.9e-44 184.9 238 46.2
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 7.0e-43 180.3 289 44.3
CBR_g24131 Chara braunii HOM05D008651 ORTHO05D000301 4.3e-40 171.0 249 43.0
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 2.1e-39 168.7 310 41.9
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 8.0e-39 166.8 284 41.9
CBR_g70710 Chara braunii HOM05D000019 ORTHO05D000002 6.8e-38 163.7 262 44.3
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 7.5e-37 160.2 257 42.0
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 2.9e-36 158.3 196 48.5
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 2.4e-35 155.2 243 44.0
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 2.4e-35 155.2 323 38.7
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 3.2e-35 154.8 166 49.4
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 1.6e-34 152.5 97 72.2
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 7.8e-34 150.2 97 74.2
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 8.6e-33 146.7 99 70.7
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 1.2e-31 142.9 376 31.1
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 4.7e-31 141.0 328 38.7
CBR_g60207 Chara braunii HOM05D007864 ORTHO05D000004 3.1e-30 138.3 233 38.6
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 3.1e-30 138.3 320 37.8
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 6.8e-30 137.1 368 31.5
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 6.8e-30 137.1 368 31.5
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 8.9e-30 136.7 272 37.1
CBR_g30864 Chara braunii HOM05D007864 ORTHO05D001468 8.9e-30 136.7 307 34.9
CBR_g32157 Chara braunii HOM05D000003 ORTHO05D000004 5.8e-29 134.0 268 38.4
CBR_g38479 Chara braunii HOM05D010403 ORTHO05D000301 5.8e-29 134.0 313 35.8
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 7.5e-29 133.7 81 75.3
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 2.7e-26 125.2 193 40.9
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 4.3e-24 117.9 271 33.2
CBR_g53685 Chara braunii HOM05D007864 ORTHO05D000004 5.6e-24 117.5 256 35.2
CBR_g73034 Chara braunii HOM05D000003 ORTHO05D000004 7.3e-24 117.1 194 38.1
CBR_g66442 Chara braunii HOM05D000004 ORTHO05D000002 1.6e-23 115.9 194 37.6
CBR_g52392 Chara braunii HOM05D007864 ORTHO05D000004 5.8e-21 107.5 287 33.1
CBR_g28729 Chara braunii HOM05D007864 ORTHO05D000004 1.3e-20 106.3 132 43.9
CBR_g23490 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-20 104.4 118 49.2
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 4.9e-20 104.4 179 36.3
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 2.4e-19 102.1 114 51.8
CBR_g28047 Chara braunii HOM05D007864 ORTHO05D006085 7.1e-19 100.5 229 39.3
CBR_g25718 Chara braunii HOM05D007864 ORTHO05D000004 2.1e-18 99.0 331 28.4
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.7e-17 95.9 70 68.6
CBR_g62632 Chara braunii HOM05D007864 ORTHO05D000004 3.0e-17 95.1 335 31.9
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 1.1e-16 93.2 64 68.8
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 6.2e-15 87.4 50 78.0
CBR_g559 Chara braunii HOM05D000019 ORTHO05D000004 8.1e-15 87.0 139 41.7
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 8.1e-15 87.0 69 63.8
CBR_g57338 Chara braunii HOM05D007864 ORTHO05D000004 3.1e-14 85.1 351 29.1
CBR_g45437 Chara braunii HOM05D007864 ORTHO05D006907 1.5e-13 82.8 163 39.9
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 8.4e-12 77.0 64 57.8
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 9.3e-11 73.6 47 70.2
CBR_g73562 Chara braunii HOM05D007864 ORTHO05D000004 8.1e-07 60.5 180 31.7
CBR_g74200 Chara braunii HOM05D010423 ORTHO05D018954 8.1e-07 60.5 180 31.7
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 1.4e-06 59.7 63 41.3


User provided reference genes

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