Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 0.0e+00 1105.9 587 100.0
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 9.3e-17 92.8 70 55.7
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 1.2e-16 92.4 576 24.3
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 1.3e-15 89.0 86 47.7
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 2.3e-15 88.2 112 40.2
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 2.3e-15 88.2 112 40.2
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 2.3e-15 88.2 71 52.1
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 3.9e-15 87.4 109 41.3
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 3.9e-15 87.4 62 56.5
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 3.9e-15 87.4 102 41.2
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 3.9e-15 87.4 135 38.5
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 5.1e-15 87.0 73 50.7
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 5.1e-15 87.0 75 52.0
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 6.7e-15 86.7 75 52.0
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 6.7e-15 86.7 67 50.7
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 6.7e-15 86.7 94 44.7
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 6.7e-15 86.7 161 37.9
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 6.7e-15 86.7 67 52.2
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 6.7e-15 86.7 136 36.8
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 8.7e-15 86.3 94 44.7
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 8.7e-15 86.3 88 44.3
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 8.7e-15 86.3 88 44.3
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 1.1e-14 85.9 74 52.7
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 1.1e-14 85.9 74 50.0
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 1.1e-14 85.9 69 52.2
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.1e-14 85.9 80 47.5
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 1.9e-14 85.1 104 42.3
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 1.9e-14 85.1 75 49.3
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 1.9e-14 85.1 67 50.7
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.9e-14 85.1 67 52.2
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 2.5e-14 84.7 73 49.3
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 2.5e-14 84.7 77 50.6
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 2.5e-14 84.7 70 50.0
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 2.5e-14 84.7 85 44.7
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 2.5e-14 84.7 71 50.7
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 2.5e-14 84.7 583 24.5
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 3.3e-14 84.3 86 44.2
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.3e-14 84.3 89 42.7
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 3.3e-14 84.3 61 55.7
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 4.3e-14 84.0 67 50.7
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 4.3e-14 84.0 62 54.8
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 4.3e-14 84.0 77 48.1
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 4.3e-14 84.0 95 41.1
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 4.3e-14 84.0 67 50.7
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 4.3e-14 84.0 555 24.3
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 5.6e-14 83.6 90 43.3
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 5.6e-14 83.6 78 44.9
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 5.6e-14 83.6 91 45.1
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 5.6e-14 83.6 62 53.2
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 5.6e-14 83.6 74 47.3
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 5.6e-14 83.6 67 56.7
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 7.4e-14 83.2 104 39.4
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 9.6e-14 82.8 78 46.2
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 9.6e-14 82.8 81 46.9
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 9.6e-14 82.8 67 50.7
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 9.6e-14 82.8 79 45.6
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 9.6e-14 82.8 62 51.6
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 1.3e-13 82.4 58 56.9
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.3e-13 82.4 78 46.2
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 1.3e-13 82.4 78 46.2
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 1.3e-13 82.4 62 53.2
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 1.3e-13 82.4 579 24.9
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 1.6e-13 82.0 75 46.7
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 1.6e-13 82.0 71 47.9
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.6e-13 82.0 71 47.9
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.6e-13 82.0 71 47.9
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.6e-13 82.0 71 47.9
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 1.6e-13 82.0 109 44.0
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 2.1e-13 81.6 69 49.3
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 2.1e-13 81.6 62 51.6
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 2.8e-13 81.3 74 45.9
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 2.8e-13 81.3 69 46.4
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 3.7e-13 80.9 74 45.9
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 4.8e-13 80.5 92 42.4
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 4.8e-13 80.5 53 60.4
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 4.8e-13 80.5 67 49.3
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 4.8e-13 80.5 125 36.8
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 6.2e-13 80.1 92 40.2
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 6.2e-13 80.1 69 47.8
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 6.2e-13 80.1 112 35.7
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 8.2e-13 79.7 102 40.2
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 8.2e-13 79.7 61 50.8
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 8.2e-13 79.7 209 32.1
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 1.1e-12 79.3 62 53.2
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 1.1e-12 79.3 51 62.7
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 1.4e-12 79.0 53 56.6
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 1.4e-12 79.0 65 52.3
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 1.4e-12 79.0 142 36.6
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.4e-12 79.0 110 40.0
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 1.8e-12 78.6 68 48.5
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 2.4e-12 78.2 65 49.2
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 4.0e-12 77.4 52 57.7
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 5.3e-12 77.0 62 48.4
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 6.9e-12 76.6 553 23.9
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 6.9e-12 76.6 118 36.4
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 9.0e-12 76.3 125 32.8
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 1.2e-11 75.9 563 23.4
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 1.5e-11 75.5 557 23.7
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 3.4e-11 74.3 553 23.5
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 4.5e-11 73.9 85 38.8
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 4.5e-11 73.9 85 38.8
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 4.5e-11 73.9 172 32.0
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 1.7e-10 72.0 83 44.6
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 2.2e-10 71.6 50 58.0
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 2.2e-10 71.6 203 30.0
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 2.9e-10 71.2 161 33.5
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 3.8e-10 70.9 132 35.6
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 3.8e-10 70.9 181 31.5
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 1.1e-09 69.3 492 23.8
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.1e-09 69.3 212 32.1
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 1.4e-09 68.9 52 55.8
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 1.9e-09 68.6 50 54.0
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.9e-09 68.6 156 34.6
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 1.9e-09 68.6 559 23.6
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 2.5e-09 68.2 50 54.0
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 2.5e-09 68.2 173 33.5
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 3.2e-09 67.8 180 29.4
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 3.2e-09 67.8 204 29.4
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 1.2e-08 65.9 170 30.0
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 3.5e-08 64.3 184 32.1
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 1.8e-07 62.0 557 21.7
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 5.1e-07 60.5 554 21.8
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 6.7e-07 60.1 117 36.8
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 8.7e-07 59.7 99 37.4
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 1.1e-06 59.3 555 22.0
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 1.5e-06 58.9 66 42.4
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 1.5e-06 58.9 195 30.3
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 1.9e-06 58.5 121 32.2
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 4.3e-06 57.4 558 22.2


User provided reference genes

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