Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48945 Chara braunii HOM05D007144 ORTHO05D008709 1.8e-47 193.0 156 100.0
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 4.1e-12 75.5 79 51.9
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 2.0e-11 73.2 80 48.8
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 2.5e-09 66.2 69 49.3
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 4.2e-09 65.5 75 50.7
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 1.2e-08 63.9 57 54.4
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 1.2e-08 63.9 66 51.5
PRCOL_00000160 Prasinoderma coloniale HOM05D007144 ORTHO05D008709 1.2e-08 63.9 84 47.6
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 1.6e-08 63.5 77 49.4
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 3.6e-08 62.4 60 51.7
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 4.7e-08 62.0 69 44.9
Cre12.g484500 Chlamydomonas reinhardtii HOM05D007144 ORTHO05D008709 6.1e-08 61.6 63 50.8
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 8.0e-08 61.2 75 49.3
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 1.4e-07 60.5 62 48.4
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 2.3e-07 59.7 66 47.0
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 2.3e-07 59.7 59 52.5
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 3.0e-07 59.3 66 47.0
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 3.0e-07 59.3 66 47.0
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 4.0e-07 58.9 63 49.2
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 5.2e-07 58.5 62 50.0
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 5.2e-07 58.5 62 50.0
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 5.2e-07 58.5 62 50.0
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 6.7e-07 58.2 72 44.4
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 6.7e-07 58.2 59 47.5
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 6.7e-07 58.2 67 47.8
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 8.8e-07 57.8 59 49.2
Dinv36172 Davidia involucrata HOM05D007144 ORTHO05D008709 8.8e-07 57.8 94 43.6
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 8.8e-07 57.8 61 52.5
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 8.8e-07 57.8 54 55.6
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 1.2e-06 57.4 65 46.2
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 1.2e-06 57.4 59 49.2
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 1.2e-06 57.4 65 44.6
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 1.2e-06 57.4 70 44.3
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 1.2e-06 57.4 70 44.3
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 1.2e-06 57.4 67 50.7
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 1.5e-06 57.0 51 56.9
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 1.5e-06 57.0 66 45.5
AagrBONN_evm.TU.Sc2ySwM_117.3093 Anthoceros agrestis HOM05D000413 ORTHO05D000292 2.0e-06 56.6 72 44.4
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 2.0e-06 56.6 55 54.5
Eucgr.B03730 Eucalyptus grandis HOM05D007144 ORTHO05D008709 2.0e-06 56.6 56 60.7
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 2.0e-06 56.6 59 47.5
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 2.0e-06 56.6 69 46.4
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 2.6e-06 56.2 71 45.1
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 2.6e-06 56.2 61 47.5
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 2.6e-06 56.2 64 46.9
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 2.6e-06 56.2 82 42.7
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 2.6e-06 56.2 57 54.4
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 2.6e-06 56.2 59 47.5
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 2.6e-06 56.2 52 55.8
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 3.3e-06 55.8 63 47.6
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 3.3e-06 55.8 53 52.8
AagrBONN_evm.TU.Sc2ySwM_228.3653 Anthoceros agrestis HOM05D000382 ORTHO05D000623 4.4e-06 55.5 56 53.6
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 4.4e-06 55.5 61 44.3
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 4.4e-06 55.5 63 46.0
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 4.4e-06 55.5 63 46.0
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 4.4e-06 55.5 63 46.0
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 4.4e-06 55.5 63 46.0
AagrBONN_evm.TU.Sc2ySwM_117.3077 Anthoceros agrestis HOM05D000413 ORTHO05D000292 5.7e-06 55.1 72 43.1
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 5.7e-06 55.1 48 56.2
Haze_03594 Corylus avellana HOM05D007144 ORTHO05D008709 5.7e-06 55.1 58 48.3
Haze_23224 Corylus avellana HOM05D007144 ORTHO05D008709 5.7e-06 55.1 58 48.3
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 7.5e-06 54.7 61 47.5
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 7.5e-06 54.7 58 48.3
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 7.5e-06 54.7 53 49.1
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 9.7e-06 54.3 66 42.4
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 9.7e-06 54.3 61 45.9
Nitab4.5_0012222g0010 Nicotiana tabacum HOM05D001964 ORTHO05D001879 9.7e-06 54.3 81 42.0


User provided reference genes

Program Settings