Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 1.9e-55 219.2 128 100.0
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.0e-13 80.5 128 46.1
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 8.8e-13 77.4 127 46.5
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.6e-12 75.9 128 44.5
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 5.7e-12 74.7 95 48.4
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 5.7e-12 74.7 128 43.8
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 7.5e-12 74.3 131 44.3
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 1.3e-11 73.6 96 46.9
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.7e-11 73.2 128 43.0
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 3.7e-11 72.0 131 42.7
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 4.8e-11 71.6 127 43.3
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 4.8e-11 71.6 127 42.5
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 6.3e-11 71.2 94 45.7
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 6.3e-11 71.2 121 43.8
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 6.3e-11 71.2 103 49.5
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 8.3e-11 70.9 101 50.5
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 8.3e-11 70.9 131 45.0
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 1.1e-10 70.5 131 44.3
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 1.1e-10 70.5 127 40.2
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 1.8e-10 69.7 90 46.7
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 1.8e-10 69.7 127 42.5
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 1.8e-10 69.7 123 47.2
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 2.4e-10 69.3 124 41.1
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 3.1e-10 68.9 115 41.7
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 3.1e-10 68.9 127 39.4
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 3.1e-10 68.9 126 41.3
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 3.1e-10 68.9 127 40.9
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 3.1e-10 68.9 129 43.4
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 4.1e-10 68.6 119 45.4
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 5.4e-10 68.2 110 45.5
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 7.0e-10 67.8 126 42.9
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 7.0e-10 67.8 126 41.3
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 9.1e-10 67.4 116 41.4
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 9.1e-10 67.4 127 39.4
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 9.1e-10 67.4 128 39.8
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 9.1e-10 67.4 128 39.8
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 9.1e-10 67.4 126 44.4
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 1.2e-09 67.0 123 43.9
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 1.2e-09 67.0 116 41.4
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 1.2e-09 67.0 132 40.9
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 1.2e-09 67.0 128 43.0
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 1.6e-09 66.6 129 43.4
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.6e-09 66.6 128 45.3
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 2.0e-09 66.2 120 40.8
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 2.0e-09 66.2 127 44.1
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 2.0e-09 66.2 129 43.4
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 2.0e-09 66.2 131 42.7
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 2.0e-09 66.2 129 39.5
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 2.7e-09 65.9 129 42.6
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 3.5e-09 65.5 128 40.6
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 3.5e-09 65.5 128 41.4
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 3.5e-09 65.5 128 40.6
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 3.5e-09 65.5 117 40.2
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 3.5e-09 65.5 122 38.5
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 3.5e-09 65.5 116 42.2
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 4.5e-09 65.1 129 44.2
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 5.9e-09 64.7 94 41.5
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 5.9e-09 64.7 126 41.3
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 5.9e-09 64.7 113 44.2
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 7.7e-09 64.3 131 41.2
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 7.7e-09 64.3 116 39.7
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 7.7e-09 64.3 96 40.6
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.0e-08 63.9 130 41.5
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 1.0e-08 63.9 121 40.5
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.3e-08 63.5 120 41.7
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 1.3e-08 63.5 130 40.8
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.3e-08 63.5 124 38.7
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.3e-08 63.5 124 38.7
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 1.3e-08 63.5 121 45.5
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 1.3e-08 63.5 130 39.2
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 1.7e-08 63.2 125 39.2
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.7e-08 63.2 125 39.2
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 1.7e-08 63.2 122 37.7
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 1.7e-08 63.2 122 38.5
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 1.7e-08 63.2 127 40.2
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 2.2e-08 62.8 94 39.4
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.2e-08 62.8 130 39.2
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 2.2e-08 62.8 113 39.8
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.9e-08 62.4 121 43.0
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 2.9e-08 62.4 126 39.7
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.9e-08 62.4 125 39.2
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 2.9e-08 62.4 129 38.8
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 2.9e-08 62.4 125 40.8
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 3.8e-08 62.0 126 42.1
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 3.8e-08 62.0 126 42.1
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.8e-08 62.0 124 39.5
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 3.8e-08 62.0 127 37.8
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 3.8e-08 62.0 90 42.2
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 3.8e-08 62.0 131 42.0
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 3.8e-08 62.0 115 40.9
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 5.0e-08 61.6 130 39.2
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 5.0e-08 61.6 131 41.2
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 5.0e-08 61.6 125 39.2
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 5.0e-08 61.6 125 38.4
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 6.5e-08 61.2 123 38.2
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.5e-08 61.2 124 39.5
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 6.5e-08 61.2 129 39.5
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 6.5e-08 61.2 127 40.9
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 8.5e-08 60.8 113 42.5
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 8.5e-08 60.8 123 40.7
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 8.5e-08 60.8 127 40.2
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 8.5e-08 60.8 130 41.5
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 1.1e-07 60.5 124 39.5
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.1e-07 60.5 124 39.5
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 1.1e-07 60.5 125 38.4
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 1.5e-07 60.1 90 40.0
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.5e-07 60.1 124 38.7
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.5e-07 60.1 123 37.4
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 1.5e-07 60.1 116 39.7
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.9e-07 59.7 125 37.6
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 1.9e-07 59.7 113 38.9
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 2.5e-07 59.3 106 40.6
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 2.5e-07 59.3 121 36.4
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 2.5e-07 59.3 112 37.5
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.5e-07 59.3 128 39.8
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 3.2e-07 58.9 124 36.3
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 3.2e-07 58.9 124 40.3
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 4.2e-07 58.5 106 38.7
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 4.2e-07 58.5 106 38.7
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 4.2e-07 58.5 106 38.7
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 4.2e-07 58.5 106 38.7
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 4.2e-07 58.5 106 38.7
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 4.2e-07 58.5 71 45.1
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 5.5e-07 58.2 119 37.8
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 5.5e-07 58.2 124 36.3
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 9.4e-07 57.4 130 37.7
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 9.4e-07 57.4 51 56.9
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 9.4e-07 57.4 53 52.8
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 9.4e-07 57.4 89 39.3
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 9.4e-07 57.4 125 35.2
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 1.6e-06 56.6 126 36.5
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 2.1e-06 56.2 126 36.5
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 2.7e-06 55.8 116 41.4
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 3.6e-06 55.5 88 42.0
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 3.6e-06 55.5 128 36.7
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 3.6e-06 55.5 128 39.1
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 4.7e-06 55.1 123 35.8
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.7e-06 55.1 93 39.8
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 4.7e-06 55.1 120 40.8
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.1e-06 54.7 124 35.5
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 6.1e-06 54.7 119 42.0
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.0e-06 54.3 124 35.5
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.0e-06 54.3 124 35.5
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 8.0e-06 54.3 128 35.2
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 8.0e-06 54.3 122 42.6


User provided reference genes

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