Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48744 Chara braunii HOM05D005344 ORTHO05D006444 3.6e-45 184.5 91 100.0
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 1.4e-09 66.2 50 60.0
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 3.6e-08 61.6 66 43.9
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 6.1e-08 60.8 50 52.0
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 1.4e-07 59.7 66 42.4
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 1.8e-07 59.3 53 49.1
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 3.0e-07 58.5 50 52.0
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 3.0e-07 58.5 50 52.0
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 3.9e-07 58.2 66 42.4
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.1e-07 57.8 66 40.9
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 5.1e-07 57.8 50 52.0
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 6.7e-07 57.4 61 44.3
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 6.7e-07 57.4 54 48.1
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 6.7e-07 57.4 66 40.9
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 8.8e-07 57.0 66 40.9
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 8.8e-07 57.0 66 42.4
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.1e-06 56.6 66 39.4
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 1.1e-06 56.6 50 52.0
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 1.1e-06 56.6 66 39.4
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 1.5e-06 56.2 50 46.0
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 1.5e-06 56.2 66 39.4
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 1.5e-06 56.2 50 50.0
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 2.0e-06 55.8 50 48.0
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 2.0e-06 55.8 50 48.0
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 2.0e-06 55.8 66 40.9
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 2.0e-06 55.8 67 40.3
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 2.0e-06 55.8 66 42.4
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 2.0e-06 55.8 61 45.9
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 2.0e-06 55.8 66 42.4
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 2.0e-06 55.8 50 50.0
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 2.0e-06 55.8 50 50.0
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 2.0e-06 55.8 67 40.3
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 2.6e-06 55.5 66 39.4
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 2.6e-06 55.5 66 39.4
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 2.6e-06 55.5 66 39.4
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 2.6e-06 55.5 50 50.0
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 2.6e-06 55.5 54 48.1
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 3.3e-06 55.1 49 49.0
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 3.3e-06 55.1 67 38.8
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 3.3e-06 55.1 50 50.0
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 3.3e-06 55.1 50 50.0
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 3.3e-06 55.1 70 42.9
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 3.3e-06 55.1 66 39.4
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 3.3e-06 55.1 50 50.0
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 3.3e-06 55.1 62 43.5
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 3.3e-06 55.1 66 42.4
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 4.4e-06 54.7 66 39.4
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 4.4e-06 54.7 66 39.4
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 4.4e-06 54.7 66 39.4
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 4.4e-06 54.7 66 40.9
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 4.4e-06 54.7 50 50.0
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 4.4e-06 54.7 50 50.0
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 5.7e-06 54.3 67 38.8
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 5.7e-06 54.3 67 40.3
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 5.7e-06 54.3 50 50.0
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 5.7e-06 54.3 50 50.0
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 5.7e-06 54.3 66 39.4
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 5.7e-06 54.3 54 48.1
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 5.7e-06 54.3 50 50.0
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 7.4e-06 53.9 67 38.8
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 7.4e-06 53.9 50 48.0
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 7.4e-06 53.9 50 48.0
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 7.4e-06 53.9 66 39.4
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 9.7e-06 53.5 66 37.9
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 9.7e-06 53.5 50 48.0


User provided reference genes

Program Settings