Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48714 Chara braunii HOM05D004997 ORTHO05D005921 4.5e-53 211.1 113 100.0
Os02g0246300 Oryza sativa ssp. japonica HOM05D004997 ORTHO05D005921 8.6e-12 73.9 123 42.3
MD05G1284500 Malus domestica HOM05D004997 ORTHO05D005921 5.6e-11 71.2 124 42.7
Prupe.4G079900 Prunus persica HOM05D004997 ORTHO05D005921 1.6e-10 69.7 124 42.7
Pp3c22_1770 Physcomitrium patens HOM05D004997 ORTHO05D005921 2.1e-10 69.3 126 38.9
SEGI_33388 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 2.1e-10 69.3 126 39.7
CiPaw.09G124400 Carya illinoinensis HOM05D004997 ORTHO05D005921 2.8e-10 68.9 127 40.2
MD10G1262900 Malus domestica HOM05D004997 ORTHO05D005921 2.8e-10 68.9 124 41.1
Mapoly0006s0079 Marchantia polymorpha HOM05D004997 ORTHO05D005921 2.8e-10 68.9 117 41.0
Zm00001eb238610 Zea mays HOM05D004997 ORTHO05D005921 3.6e-10 68.6 117 42.7
HPP92_006252 Vanilla planifolia HOM05D004997 ORTHO05D005921 6.2e-10 67.8 120 40.0
Migut.M00914 Erythranthe guttata HOM05D004997 ORTHO05D005921 8.1e-10 67.4 125 40.8
FAN11G3072 Fragaria x ananassa HOM05D004997 ORTHO05D005921 8.1e-10 67.4 124 40.3
FAN21G2809 Fragaria x ananassa HOM05D004997 ORTHO05D005921 8.1e-10 67.4 124 40.3
RcHm_v2.0_Chr5g0013981 Rosa chinensis HOM05D004997 ORTHO05D005921 8.1e-10 67.4 124 40.3
MSTRG.7483 Avicennia marina HOM05D004997 ORTHO05D005921 1.1e-09 67.0 122 40.2
Ciclev10017164m.g Citrus clementina HOM05D004997 ORTHO05D005921 1.1e-09 67.0 124 38.7
FvH4_3g05660 Fragaria vesca HOM05D004997 ORTHO05D005921 1.1e-09 67.0 124 40.3
AagrBONN_evm.TU.Sc2ySwM_344.2433 Anthoceros agrestis HOM05D004997 ORTHO05D005921 1.4e-09 66.6 124 39.5
CDE09G0791 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 1.8e-09 66.2 121 38.8
HanXRQChr11g0340951 Helianthus annuus HOM05D004997 ORTHO05D005921 1.8e-09 66.2 122 38.5
CiPaw.10G092400 Carya illinoinensis HOM05D004997 ORTHO05D005921 2.3e-09 65.9 121 38.0
Actinidia39569 Actinidia chinensis HOM05D004997 ORTHO05D005921 3.1e-09 65.5 108 41.7
CDE02G0055 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 3.1e-09 65.5 121 38.0
Dinv32261 Davidia involucrata HOM05D004997 ORTHO05D005921 3.1e-09 65.5 120 40.0
SGA_v2.0_scaffold1G00167 Striga asiatica HOM05D004997 ORTHO05D005921 3.1e-09 65.5 121 38.0
SGA_v2.0_scaffold333G48998 Striga asiatica HOM05D004997 ORTHO05D005921 3.1e-09 65.5 135 36.3
PSO384G3576 Papaver somniferum HOM05D004997 ORTHO05D005921 4.0e-09 65.1 125 38.4
TAR626G0896 Trochodendron aralioides HOM05D004997 ORTHO05D005921 4.0e-09 65.1 124 37.9
PSO339G4484 Papaver somniferum HOM05D004997 ORTHO05D005921 5.2e-09 64.7 125 38.4
MSTRG.16239 Avicennia marina HOM05D004997 ORTHO05D005921 8.9e-09 63.9 122 37.7
CSS0020008 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 1.2e-08 63.5 124 38.7
Nn4g24866 Nelumbo nucifera HOM05D004997 ORTHO05D005921 1.2e-08 63.5 124 37.9
GSVIVG01021444001 Vitis vinifera HOM05D004997 ORTHO05D005921 1.2e-08 63.5 118 39.0
Cfa000953 Carpinus fangiana HOM05D004997 ORTHO05D005921 1.5e-08 63.2 124 36.3
MELO3C002717.2 Cucumis melo HOM05D004997 ORTHO05D005921 1.5e-08 63.2 124 36.3
Duzib192G0549 Durio zibethinus HOM05D004997 ORTHO05D005921 2.0e-08 62.8 124 37.1
Gohir.A05G148700 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.0e-08 62.8 126 39.7
Lalb_Chr05g0222161 Lupinus albus HOM05D004997 ORTHO05D005921 2.0e-08 62.8 122 36.1
Phvul.002G321900 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 2.0e-08 62.8 119 37.0
THA.LOC104812669 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 2.0e-08 62.8 124 37.1
THA.LOC104814295 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 2.0e-08 62.8 124 37.1
CANSAT35G1260 Cannabis sativa HOM05D004997 ORTHO05D005921 2.6e-08 62.4 124 36.3
ECA233G0220 Erigeron canadensis HOM05D004997 ORTHO05D005921 2.6e-08 62.4 124 37.1
unitig_32.g11442 Utricularia gibba HOM05D004997 ORTHO05D005921 2.6e-08 62.4 122 37.7
Eucgr.E02397 Eucalyptus grandis HOM05D004997 ORTHO05D005921 3.4e-08 62.0 124 37.9
Glyma.12G006600 Glycine max HOM05D004997 ORTHO05D005921 3.4e-08 62.0 119 37.0
TWI38G0351 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 3.4e-08 62.0 123 38.2
Solyc08g016420.3 Solanum lycopersicum HOM05D004997 ORTHO05D005921 4.4e-08 61.6 119 37.8
Sopen08g006800 Solanum pennellii HOM05D004997 ORTHO05D005921 4.4e-08 61.6 119 37.8
HanXRQChr01g0020611 Helianthus annuus HOM05D004997 ORTHO05D005921 5.8e-08 61.2 120 36.7
Potri.004G131900 Populus trichocarpa HOM05D004997 ORTHO05D005921 5.8e-08 61.2 124 35.5
Actinidia07691 Actinidia chinensis HOM05D004997 ORTHO05D005921 7.5e-08 60.8 124 34.7
Gohir.A10G040300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 7.5e-08 60.8 123 35.8
Lj4g0009583 Lotus japonicus HOM05D004997 ORTHO05D005921 7.5e-08 60.8 119 35.3
Lj5g0010316 Lotus japonicus HOM05D004997 ORTHO05D005921 7.5e-08 60.8 119 35.3
Sed0005528 Sechium edule HOM05D004997 ORTHO05D005921 7.5e-08 60.8 124 37.9
arahy.Tifrunner.gnm1.ann1.06CE9J Arachis hypogaea HOM05D004997 ORTHO05D005921 9.9e-08 60.5 132 34.8
Gorai.011G043400 Gossypium raimondii HOM05D004997 ORTHO05D005921 9.9e-08 60.5 123 35.8
Thecc.06G151500 Theobroma cacao HOM05D004997 ORTHO05D005921 9.9e-08 60.5 123 36.6
TWI38G1166 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 9.9e-08 60.5 124 37.1
Aqoxy3G00593 Aquilegia oxysepala HOM05D004997 ORTHO05D005921 1.3e-07 60.1 122 36.1
VMungo0251G3606 Vigna mungo HOM05D004997 ORTHO05D005921 1.3e-07 60.1 119 35.3
Glyma.08G046600 Glycine max HOM05D004997 ORTHO05D005921 2.2e-07 59.3 119 35.3
Gohir.D05G151300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.2e-07 59.3 123 35.8
Gorai.009G155300 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.2e-07 59.3 123 35.8
Medtr5g055650 Medicago truncatula HOM05D004997 ORTHO05D005921 2.2e-07 59.3 119 34.5
Psat2g084800 Pisum sativum HOM05D004997 ORTHO05D005921 2.2e-07 59.3 119 34.5
Sed0006544 Sechium edule HOM05D004997 ORTHO05D005921 2.2e-07 59.3 123 36.6
Gorai.002G125400 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.9e-07 58.9 113 38.9
Gohir.D01G100600 Gossypium hirsutum HOM05D004997 ORTHO05D005921 3.7e-07 58.5 113 38.1
Gorai.002G185400 Gossypium raimondii HOM05D004997 ORTHO05D005921 3.7e-07 58.5 123 36.6
PGR042G1500 Punica granatum HOM05D004997 ORTHO05D005921 3.7e-07 58.5 124 37.9
Carub.0001s2824 Capsella rubella HOM05D004997 ORTHO05D005921 4.9e-07 58.2 123 35.0
CARHR029400 Cardamine hirsuta HOM05D004997 ORTHO05D005921 4.9e-07 58.2 123 35.8
SMO367G0874 Selaginella moellendorffii HOM05D004997 ORTHO05D005921 4.9e-07 58.2 109 39.4
Gohir.D10G041200 Gossypium hirsutum HOM05D004997 ORTHO05D005921 6.4e-07 57.8 123 35.8
AT1G29990 Arabidopsis thaliana HOM05D004997 ORTHO05D005921 8.3e-07 57.4 124 33.9
AL1G43880 Arabidopsis lyrata HOM05D004997 ORTHO05D005921 1.4e-06 56.6 123 34.1
Sp1g25870 Schrenkiella parvula HOM05D004997 ORTHO05D005921 1.4e-06 56.6 123 34.1
BcaC06g35482 Brassica carinata HOM05D004997 ORTHO05D005921 2.4e-06 55.8 123 33.3
BolC7t42045H Brassica oleracea HOM05D004997 ORTHO05D005921 2.4e-06 55.8 123 33.3
BcaB03g13847 Brassica carinata HOM05D004997 ORTHO05D005921 3.2e-06 55.5 122 33.6
BcaB07g32600 Brassica carinata HOM05D004997 ORTHO05D005921 9.2e-06 53.9 123 32.5
A09p36530 Brassica napus HOM05D004997 ORTHO05D005921 9.2e-06 53.9 123 32.5
BraA09t39174Z Brassica rapa HOM05D004997 ORTHO05D005921 9.2e-06 53.9 123 32.5


User provided reference genes

Program Settings