Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48697 Chara braunii HOM05D006937 ORTHO05D008747 3.0e-108 395.2 200 100.0
Zm00001eb326530 Zea mays HOM05D006937 ORTHO05D008747 5.9e-40 168.3 146 56.2
Os07g0595800 Oryza sativa ssp. japonica HOM05D006937 ORTHO05D008747 6.6e-39 164.9 146 55.5
TAR629G2875 Trochodendron aralioides HOM05D006937 ORTHO05D008747 1.1e-38 164.1 139 57.6
SEGI_41088 Sequoiadendron giganteum HOM05D006937 ORTHO05D008747 1.5e-38 163.7 142 55.6
CiPaw.06G089000 Carya illinoinensis HOM05D006937 ORTHO05D008747 5.6e-38 161.8 137 56.2
Medtr5g042620 Medicago truncatula HOM05D006937 ORTHO05D008747 5.6e-38 161.8 139 55.4
Eucgr.G02475 Eucalyptus grandis HOM05D006937 ORTHO05D008747 7.3e-38 161.4 139 54.7
Gohir.A05G305601 Gossypium hirsutum HOM05D006937 ORTHO05D008747 9.5e-38 161.0 139 54.7
VMungo1215G2773 Vigna mungo HOM05D006937 ORTHO05D008747 1.2e-37 160.6 143 52.4
Glyma.01G053200 Glycine max HOM05D006937 ORTHO05D008747 1.6e-37 160.2 139 51.8
Migut.E00068 Erythranthe guttata HOM05D006937 ORTHO05D008747 3.6e-37 159.1 139 52.5
Glyma.02G111700 Glycine max HOM05D006937 ORTHO05D008747 4.7e-37 158.7 139 51.8
Phvul.001G169600 Phaseolus vulgaris HOM05D006937 ORTHO05D008747 6.1e-37 158.3 140 51.4
Gohir.D05G305600 Gossypium hirsutum HOM05D006937 ORTHO05D008747 8.0e-37 157.9 139 54.0
MELO3C024261.2 Cucumis melo HOM05D006937 ORTHO05D008747 1.0e-36 157.5 139 54.0
Dinv34099 Davidia involucrata HOM05D003669 ORTHO05D005046 1.0e-36 157.5 139 52.5
Gorai.009G325600 Gossypium raimondii HOM05D006937 ORTHO05D008747 1.0e-36 157.5 139 54.0
QL03p069840 Quercus lobata HOM05D006937 ORTHO05D008747 1.0e-36 157.5 139 55.4
CsaV3_7G033500 Cucumis sativus L. HOM05D006937 ORTHO05D008747 1.4e-36 157.1 139 54.0
MSTRG.2329 Avicennia marina HOM05D006937 ORTHO05D008747 1.8e-36 156.8 139 51.1
CANSAT64G0520 Cannabis sativa HOM05D006937 ORTHO05D008747 1.8e-36 156.8 139 54.7
Lj6g0000786 Lotus japonicus HOM05D006937 ORTHO05D008747 1.8e-36 156.8 142 50.0
MD13G1068100 Malus domestica HOM05D006937 ORTHO05D008747 1.8e-36 156.8 145 53.8
Manes.01G032100 Manihot esculenta HOM05D006937 ORTHO05D008747 1.8e-36 156.8 139 52.5
Thecc.02G339100 Theobroma cacao HOM05D006937 ORTHO05D008747 2.3e-36 156.4 139 54.7
Nn3g17337 Nelumbo nucifera HOM05D006937 ORTHO05D008747 3.0e-36 156.0 139 55.4
SGA_v2.0_scaffold287G47146 Striga asiatica HOM05D006937 ORTHO05D008747 3.0e-36 156.0 138 52.9
Mapoly0006s0094 Marchantia polymorpha HOM05D006937 ORTHO05D008747 4.0e-36 155.6 141 58.2
Ciclev10032989m.g Citrus clementina HOM05D006937 ORTHO05D008747 5.2e-36 155.2 139 54.0
COL.COLO4_27967 Corchorus olitorius HOM05D006937 ORTHO05D008747 5.2e-36 155.2 139 54.0
Lalb_Chr10g0098481 Lupinus albus HOM05D006937 ORTHO05D008747 5.2e-36 155.2 137 54.0
ATR0730G163 Amborella trichopoda HOM05D006937 ORTHO05D008747 6.8e-36 154.8 137 54.0
DCAR_018308 Daucus carota HOM05D006937 ORTHO05D008747 8.9e-36 154.5 138 50.7
MD16G1066900 Malus domestica HOM05D006937 ORTHO05D008747 1.5e-35 153.7 145 52.4
CSS0011527 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 2.6e-35 152.9 139 52.5
Sed0004013 Sechium edule HOM05D006937 ORTHO05D008747 2.6e-35 152.9 139 53.2
Aqoxy3G03499 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 3.4e-35 152.5 136 53.7
Aqoxy5G02063 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 3.4e-35 152.5 136 53.7
FvH4_4g30700 Fragaria vesca HOM05D006937 ORTHO05D008747 3.4e-35 152.5 139 53.2
FAN17G2174 Fragaria x ananassa HOM05D006937 ORTHO05D008747 3.4e-35 152.5 139 53.2
Lj1g0016193 Lotus japonicus HOM05D006937 ORTHO05D008747 3.4e-35 152.5 138 50.7
Sopen05g007730 Solanum pennellii HOM05D006937 ORTHO05D008747 3.4e-35 152.5 139 48.9
HanXRQChr17g0537301 Helianthus annuus HOM05D006937 ORTHO05D008747 4.4e-35 152.1 139 53.2
Prupe.1G280000 Prunus persica HOM05D006937 ORTHO05D008747 4.4e-35 152.1 144 50.7
Sed0007221 Sechium edule HOM05D006937 ORTHO05D008747 4.4e-35 152.1 139 52.5
GSVIVG01025409001 Vitis vinifera HOM05D006937 ORTHO05D008747 4.4e-35 152.1 138 52.2
CAN.G1642.3 Capsicum annuum HOM05D006937 ORTHO05D008747 5.8e-35 151.8 139 48.9
TWI60G0457 Tripterygium wilfordii HOM05D006937 ORTHO05D008747 5.8e-35 151.8 140 50.0
Atru.chr11.1713 Acer truncatum HOM05D006937 ORTHO05D008747 1.3e-34 150.6 139 54.0
FAN07G0310 Fragaria x ananassa HOM05D006937 ORTHO05D008747 1.3e-34 150.6 138 52.9
RcHm_v2.0_Chr4g0439101 Rosa chinensis HOM05D006937 ORTHO05D008747 1.3e-34 150.6 139 52.5
PGSC0003DMG401028340 Solanum tuberosum HOM05D006937 ORTHO05D008747 1.3e-34 150.6 139 48.9
EL10Ac6g13467 Beta vulgaris HOM05D006937 ORTHO05D008747 1.7e-34 150.2 137 51.8
Haze_11954 Corylus avellana HOM05D006937 ORTHO05D008747 2.2e-34 149.8 155 51.0
SGA_v2.0_scaffold114G32026 Striga asiatica HOM05D006937 ORTHO05D008747 2.9e-34 149.4 148 50.0
arahy.Tifrunner.gnm1.ann1.TRF8LB Arachis hypogaea HOM05D006937 ORTHO05D008747 4.9e-34 148.7 138 50.7
CAN.G964.22 Capsicum annuum HOM05D006937 ORTHO05D008747 4.9e-34 148.7 139 47.5
ECA246G2190 Erigeron canadensis HOM05D006937 ORTHO05D008747 1.1e-33 147.5 137 51.8
Potri.008G091400 Populus trichocarpa HOM05D006937 ORTHO05D008747 1.1e-33 147.5 138 51.4
AagrBONN_evm.TU.Sc2ySwM_228.447 Anthoceros agrestis HOM05D006937 ORTHO05D008747 1.4e-33 147.1 143 51.0
PSO675G6138 Papaver somniferum HOM05D006937 ORTHO05D008747 1.4e-33 147.1 136 53.7
arahy.Tifrunner.gnm1.ann1.8BL9U8 Arachis hypogaea HOM05D006937 ORTHO05D008747 3.2e-33 146.0 175 43.4
Cc11_g12540 Coffea canephora HOM05D006937 ORTHO05D008747 4.1e-33 145.6 138 51.4
Lsat_1_v5_gn_3_20221 Lactuca sativa HOM05D006937 ORTHO05D008747 4.1e-33 145.6 138 50.7
TPR.G19944 Trifolium pratense HOM05D006937 ORTHO05D008747 5.4e-33 145.2 145 49.0
Eucgr.D01709 Eucalyptus grandis HOM05D006937 ORTHO05D008747 9.2e-33 144.4 139 51.1
arahy.Tifrunner.gnm1.ann1.A48TS2 Arachis hypogaea HOM05D006937 ORTHO05D008747 1.2e-32 144.1 145 49.0
Pp3c21_19110 Physcomitrium patens HOM05D006937 ORTHO05D008747 1.0e-31 141.0 151 50.3
unitig_744.g24284 Utricularia gibba HOM05D006937 ORTHO05D008747 1.3e-31 140.6 152 45.4
Hund25447 Selenicereus undatus HOM05D006937 ORTHO05D008747 2.3e-31 139.8 139 48.9
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 6.6e-31 138.3 125 52.0
PSO541G5056 Papaver somniferum HOM05D006937 ORTHO05D008747 1.5e-30 137.1 136 51.5
Psat2g127680 Pisum sativum HOM05D006937 ORTHO05D008747 1.5e-30 137.1 124 51.6
AUR62024142 Chenopodium quinoa HOM05D006937 ORTHO05D008747 1.9e-30 136.7 139 48.2
Duzib268G1027 Durio zibethinus HOM05D006937 ORTHO05D008747 2.5e-30 136.3 138 50.0
Lj3A1033G46 Lonicera japonica HOM05D006937 ORTHO05D008747 2.5e-30 136.3 128 48.4
Aqoxy5G02982 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 1.2e-29 134.0 136 50.7
AUR62005588 Chenopodium quinoa HOM05D006937 ORTHO05D008747 1.6e-29 133.7 139 46.8
Nitab4.5_0000391g0170 Nicotiana tabacum HOM05D006937 ORTHO05D008747 2.1e-29 133.3 139 47.5
PGR142G2813 Punica granatum HOM05D006937 ORTHO05D008747 6.2e-29 131.7 139 46.8
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 3.4e-27 125.9 130 48.5
PGR119G1353 Punica granatum HOM05D006937 ORTHO05D008747 4.4e-27 125.6 144 44.4
Ca_04880_v3 Cicer arietinum L. HOM05D006937 ORTHO05D008747 5.8e-27 125.2 108 52.8
FAN12G3635 Fragaria x ananassa HOM05D006937 ORTHO05D008747 9.8e-27 124.4 101 57.4
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 3.7e-26 122.5 167 41.3
AL1G39070 Arabidopsis lyrata HOM05D006937 ORTHO05D008747 6.4e-26 121.7 147 42.9
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 8.3e-26 121.3 153 42.5
AT1G26660 Arabidopsis thaliana HOM05D006937 ORTHO05D008747 1.9e-25 120.2 145 42.1
Carub.0001s2437 Capsella rubella HOM05D006937 ORTHO05D008747 2.4e-25 119.8 150 42.0
BcaC06g35132 Brassica carinata HOM05D006937 ORTHO05D008747 3.2e-25 119.4 148 43.2
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 3.2e-25 119.4 153 41.8
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 3.2e-25 119.4 153 41.8
Aa31LG7G8430 Aethionema arabicum HOM05D006937 ORTHO05D008747 4.1e-25 119.0 150 42.0
BcaB05g21932 Brassica carinata HOM05D006937 ORTHO05D008747 4.1e-25 119.0 157 40.1
BcaB03g14081 Brassica carinata HOM05D006937 ORTHO05D008747 5.4e-25 118.6 152 41.4
Nitab4.5_0008978g0010 Nicotiana tabacum HOM05D006937 ORTHO05D008747 7.0e-25 118.2 186 37.1
Thhalv10008997m.g Eutrema salsugineum HOM05D006937 ORTHO05D008747 1.2e-24 117.5 150 42.0
Sp6g00050 Schrenkiella parvula HOM05D006937 ORTHO05D008747 2.0e-24 116.7 152 40.1
THA.LOC104808654 Tarenaya hassleriana HOM05D006937 ORTHO05D008747 2.0e-24 116.7 144 43.1
Sc11g0000570 Simmondsia chinensis HOM05D006937 ORTHO05D008747 3.5e-24 115.9 105 52.4
CDE11G0882 Ceratophyllum demersum HOM05D006937 ORTHO05D008747 7.8e-24 114.8 152 42.1
Rhsim12G0077900 Rhododendron simsii HOM05D006937 ORTHO05D008747 1.3e-23 114.0 105 51.4
SHI35111 Sapria himalayana HOM05D006937 ORTHO05D008747 3.0e-23 112.8 146 44.5
Actinidia31958 Actinidia chinensis HOM05D003669 ORTHO05D005046 2.5e-22 109.8 144 40.3
arahy.Tifrunner.gnm1.ann1.J4SELD Arachis hypogaea HOM05D006937 ORTHO05D008747 1.4e-20 104.0 101 49.5
Sabra08G0068400 Salix brachista HOM05D006937 ORTHO05D008747 4.4e-19 99.0 113 46.0
Peaxi162Scf00222g00024 Petunia axillaris HOM05D006937 ORTHO05D008747 6.4e-18 95.1 112 42.9
Ah.02g130690 Amaranthus hybridus HOM05D006937 ORTHO05D008747 4.1e-17 92.4 138 38.4
ClCG09G001850 Citrullus lanatus HOM05D006937 ORTHO05D008747 2.7e-16 89.7 67 62.7
PSO357G0488 Papaver somniferum HOM05D006937 ORTHO05D008747 7.8e-16 88.2 79 55.7
arahy.Tifrunner.gnm1.ann1.K4YSPN Arachis hypogaea HOM05D006937 ORTHO05D008747 2.1e-13 80.1 63 55.6
SalBow8G3842 Salvia bowleyana HOM05D006937 ORTHO05D008747 2.1e-13 80.1 142 35.9
CSS0016362 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 6.8e-12 75.1 143 33.6
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 2.9e-10 69.7 99 40.4
PRCOL_00006274 Prasinoderma coloniale HOM05D006937 ORTHO05D008747 1.1e-09 67.8 142 33.1
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 1.9e-06 57.0 114 34.2


User provided reference genes

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