Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48542 Chara braunii HOM05D003253 ORTHO05D002078 0.0e+00 2488.0 1519 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1597 Anthoceros agrestis HOM05D003253 ORTHO05D002078 8.8e-27 127.5 322 31.4
Pp3c15_9060 Physcomitrium patens HOM05D003253 ORTHO05D002078 7.5e-26 124.4 365 29.0
Pp3c9_22000 Physcomitrium patens HOM05D003253 ORTHO05D002078 7.5e-26 124.4 337 30.0
Pp3c9_22005 Physcomitrium patens HOM05D003253 ORTHO05D002078 7.5e-26 124.4 337 30.0
SEGI_30321 Sequoiadendron giganteum HOM05D003253 ORTHO05D002078 1.2e-23 117.1 353 28.0
Aqoxy2G03403 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 2.0e-23 116.3 343 29.4
MBI12_g36454_MAGBIO Magnolia biondii HOM05D003253 ORTHO05D002078 1.0e-22 114.0 357 27.5
TAR633G1510 Trochodendron aralioides HOM05D003253 ORTHO05D002078 1.7e-22 113.2 344 28.8
SEGI_19972 Sequoiadendron giganteum HOM05D003253 ORTHO05D002078 2.9e-22 112.5 290 30.0
Aqoxy5G00455 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 5.0e-22 111.7 341 28.2
PSO210G5071 Papaver somniferum HOM05D003253 ORTHO05D002078 5.0e-22 111.7 394 26.4
Actinidia25640 Actinidia chinensis HOM05D003253 ORTHO05D002078 6.5e-22 111.3 342 29.8
Actinidia35276 Actinidia chinensis HOM05D003253 ORTHO05D002078 6.5e-22 111.3 342 29.8
TWI09G0550 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 3.2e-21 109.0 365 27.4
ClCG05G005130 Citrullus lanatus HOM05D003253 ORTHO05D002078 4.2e-21 108.6 398 26.4
Nn1g02344 Nelumbo nucifera HOM05D003253 ORTHO05D002078 4.2e-21 108.6 346 27.7
PSO761G0482 Papaver somniferum HOM05D003253 ORTHO05D002078 2.7e-20 105.9 343 27.1
Potri.010G086600 Populus trichocarpa HOM05D003253 ORTHO05D002078 4.7e-20 105.1 361 27.4
RhsimUnG0259000 Rhododendron simsii HOM05D003253 ORTHO05D002078 4.7e-20 105.1 379 27.7
Manes.03G177500 Manihot esculenta HOM05D003253 ORTHO05D002078 1.0e-19 104.0 344 28.2
CSS0030672 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 1.4e-19 103.6 355 25.9
CSS0040917 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 2.3e-19 102.8 355 25.9
Cc03_g03900 Coffea canephora HOM05D003253 ORTHO05D002078 4.0e-19 102.1 347 25.6
Medtr1g103600 Medicago truncatula HOM05D003253 ORTHO05D002078 5.2e-19 101.7 339 28.3
Sopen09g024540 Solanum pennellii HOM05D003253 ORTHO05D002078 6.8e-19 101.3 313 28.8
vmacro09557 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 6.8e-19 101.3 348 27.9
Gohir.A09G056601 Gossypium hirsutum HOM05D003253 ORTHO05D002078 8.8e-19 100.9 345 27.2
Sc19g0004070 Simmondsia chinensis HOM05D003253 ORTHO05D002078 8.8e-19 100.9 373 26.8
Migut.N00190 Erythranthe guttata HOM05D003253 ORTHO05D002078 1.2e-18 100.5 373 26.8
vmacro09558 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 1.5e-18 100.1 341 28.2
Gohir.D09G055900 Gossypium hirsutum HOM05D003253 ORTHO05D002078 2.6e-18 99.4 345 27.0
arahy.Tifrunner.gnm1.ann1.2A778E Arachis hypogaea HOM05D003253 ORTHO05D002078 3.4e-18 99.0 348 27.6
Gorai.006G069200 Gossypium raimondii HOM05D003253 ORTHO05D002078 3.4e-18 99.0 345 26.7
TWI53G2057 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 4.4e-18 98.6 346 26.0
Lj6C607G12 Lonicera japonica HOM05D003253 ORTHO05D002078 5.7e-18 98.2 340 26.8
Sabra10G0056900 Salix brachista HOM05D003253 ORTHO05D002078 5.7e-18 98.2 347 27.1
Sopen06g019340 Solanum pennellii HOM05D003253 ORTHO05D002078 5.7e-18 98.2 361 25.8
arahy.Tifrunner.gnm1.ann1.ETQ115 Arachis hypogaea HOM05D003253 ORTHO05D002078 7.5e-18 97.8 348 27.0
RcHm_v2.0_Chr4g0416001 Rosa chinensis HOM05D003253 ORTHO05D002078 7.5e-18 97.8 352 26.7
MSTRG.24737 Avicennia marina HOM05D003253 ORTHO05D002078 9.8e-18 97.4 339 25.1
Cpa.g.sc1512.1 Carica papaya HOM05D003253 ORTHO05D002078 9.8e-18 97.4 347 25.9
BcaB02g06862 Brassica carinata HOM05D003253 ORTHO05D002078 1.7e-17 96.7 346 25.4
CBR_g55481 Chara braunii HOM05D009221 ORTHO05D000497 1.7e-17 96.7 52 88.5
MELO3C006528.2 Cucumis melo HOM05D003253 ORTHO05D002078 1.7e-17 96.7 347 26.5
PSO832G3307 Papaver somniferum HOM05D003253 ORTHO05D002078 1.7e-17 96.7 357 27.5
Nitab4.5_0000321g0110 Nicotiana tabacum HOM05D003253 ORTHO05D002078 2.8e-17 95.9 353 25.2
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 3.7e-17 95.5 398 24.9
SalBow3G1993 Salvia bowleyana HOM05D003253 ORTHO05D002078 3.7e-17 95.5 339 26.8
Eucgr.H03454 Eucalyptus grandis HOM05D003253 ORTHO05D002078 4.9e-17 95.1 341 25.8
MD13G1194400 Malus domestica HOM05D003253 ORTHO05D002078 4.9e-17 95.1 347 25.9
Psat4g210160 Pisum sativum HOM05D003253 ORTHO05D002078 6.3e-17 94.7 360 28.3
PGSC0003DMG400030174 Solanum tuberosum HOM05D003253 ORTHO05D002078 6.3e-17 94.7 322 26.1
GSVIVG01017993001 Vitis vinifera HOM05D003253 ORTHO05D002078 6.3e-17 94.7 370 27.3
PSO210G1140 Papaver somniferum HOM05D003253 ORTHO05D002078 8.3e-17 94.4 357 28.0
Sed0023955 Sechium edule HOM05D003253 ORTHO05D002078 8.3e-17 94.4 385 26.2
HanXRQChr09g0248261 Helianthus annuus HOM05D003253 ORTHO05D002078 1.1e-16 94.0 351 25.6
PGR004G0723 Punica granatum HOM05D003253 ORTHO05D002078 1.1e-16 94.0 347 25.9
AUR62025569 Chenopodium quinoa HOM05D003253 ORTHO05D002078 1.4e-16 93.6 330 28.5
FAN22G0721 Fragaria x ananassa HOM05D003253 ORTHO05D002078 1.4e-16 93.6 348 27.3
Sopen06g019350 Solanum pennellii HOM05D003253 ORTHO05D002078 1.4e-16 93.6 296 27.7
ATR0697G249 Amborella trichopoda HOM05D003253 ORTHO05D002078 2.4e-16 92.8 431 25.3
Dinv44542 Davidia involucrata HOM05D003253 ORTHO05D002078 2.4e-16 92.8 339 25.1
FAN12G2226 Fragaria x ananassa HOM05D003253 ORTHO05D002078 3.1e-16 92.4 352 27.3
Lalb_Chr09g0319891 Lupinus albus HOM05D003253 ORTHO05D002078 3.1e-16 92.4 321 28.0
Medtr5g006390 Medicago truncatula HOM05D003253 ORTHO05D002078 5.4e-16 91.7 347 27.7
Nitab4.5_0008118g0010 Nicotiana tabacum HOM05D003253 ORTHO05D002078 5.4e-16 91.7 340 25.9
Actinidia25641 Actinidia chinensis HOM05D003253 ORTHO05D002078 7.0e-16 91.3 340 25.9
Actinidia35275 Actinidia chinensis HOM05D003253 ORTHO05D002078 7.0e-16 91.3 340 25.9
DCAR_002383 Daucus carota HOM05D003253 ORTHO05D002078 7.0e-16 91.3 351 26.2
FvH4_4g16310 Fragaria vesca HOM05D003253 ORTHO05D002078 7.0e-16 91.3 352 27.3
Zm00001eb057100 Zea mays HOM05D003253 ORTHO05D002078 7.0e-16 91.3 331 25.4
A10p04120 Brassica napus HOM05D003253 ORTHO05D002078 9.1e-16 90.9 346 26.6
Lj5g0003807 Lotus japonicus HOM05D003253 ORTHO05D002078 9.1e-16 90.9 365 25.5
Solyc06g054230.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.1e-16 90.9 355 24.2
PGSC0003DMG400023100 Solanum tuberosum HOM05D003253 ORTHO05D002078 9.1e-16 90.9 340 24.1
Ca_24401_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 1.2e-15 90.5 298 28.5
PGR004G0591 Punica granatum HOM05D003253 ORTHO05D002078 1.2e-15 90.5 348 24.4
Sed0019594 Sechium edule HOM05D003253 ORTHO05D002078 1.2e-15 90.5 371 26.4
AUR62008677 Chenopodium quinoa HOM05D003253 ORTHO05D002078 1.6e-15 90.1 329 28.3
Oeu049061.1 Olea europaea HOM05D003253 ORTHO05D002078 1.6e-15 90.1 372 25.5
PGR004G2032 Punica granatum HOM05D003253 ORTHO05D002078 1.6e-15 90.1 346 26.3
TPR.G37995 Trifolium pratense HOM05D003253 ORTHO05D002078 1.6e-15 90.1 295 27.1
Haze_00887 Corylus avellana HOM05D003253 ORTHO05D002078 2.0e-15 89.7 346 25.7
Lalb_Chr25g0279741 Lupinus albus HOM05D003253 ORTHO05D002078 2.7e-15 89.4 349 24.6
Sopen09g031020 Solanum pennellii HOM05D003253 ORTHO05D002078 2.7e-15 89.4 384 25.3
Glyma.11G006000 Glycine max HOM05D003253 ORTHO05D002078 3.5e-15 89.0 380 26.1
Cfa015661 Carpinus fangiana HOM05D003253 ORTHO05D002078 4.5e-15 88.6 346 26.3
Ca_10889_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 4.5e-15 88.6 329 26.4
Ca_30336_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 4.5e-15 88.6 329 26.4
Phvul.002G044800 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 4.5e-15 88.6 365 24.7
SGA_v2.0_scaffold522G52706 Striga asiatica HOM05D003253 ORTHO05D002078 4.5e-15 88.6 346 25.7
Sp1g04290 Schrenkiella parvula HOM05D003253 ORTHO05D002078 5.9e-15 88.2 347 24.5
DCAR_027222 Daucus carota HOM05D003253 ORTHO05D002078 7.7e-15 87.8 351 24.5
Lalb_Chr05g0211011 Lupinus albus HOM05D003253 ORTHO05D002078 7.7e-15 87.8 295 25.8
Peaxi162Scf00092g00617 Petunia axillaris HOM05D003253 ORTHO05D002078 7.7e-15 87.8 354 26.3
Solyc09g082140.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 7.7e-15 87.8 378 24.3
CANSAT78G2304 Cannabis sativa HOM05D003253 ORTHO05D002078 1.0e-14 87.4 343 26.2
PGSC0003DMG400032262 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.0e-14 87.4 365 24.7
CiPaw.01G167300 Carya illinoinensis HOM05D003253 ORTHO05D002078 1.3e-14 87.0 346 24.9
Lsat_1_v5_gn_7_64380 Lactuca sativa HOM05D003253 ORTHO05D002078 1.3e-14 87.0 383 24.5
Carub.0001s0475 Capsella rubella HOM05D003253 ORTHO05D002078 1.7e-14 86.7 347 24.5
FAN07G1764 Fragaria x ananassa HOM05D003253 ORTHO05D002078 1.7e-14 86.7 352 26.7
CARHR004920 Cardamine hirsuta HOM05D003253 ORTHO05D002078 2.3e-14 86.3 353 25.5
Hma1.2p1_0602F.1_g187400 Hydrangea macrophylla HOM05D003253 ORTHO05D002078 2.3e-14 86.3 343 26.5
C05p03760 Brassica napus HOM05D003253 ORTHO05D002078 2.9e-14 85.9 347 25.6
COL.COLO4_21490 Corchorus olitorius HOM05D003253 ORTHO05D002078 3.8e-14 85.5 353 27.5
Ciclev10004835m.g Citrus clementina HOM05D003253 ORTHO05D002078 5.0e-14 85.1 353 25.2
Peaxi162Scf00192g00112 Petunia axillaris HOM05D003253 ORTHO05D002078 5.0e-14 85.1 341 24.3
CAN.G1094.7 Capsicum annuum HOM05D003253 ORTHO05D002078 6.6e-14 84.7 361 25.8
Phvul.002G045300 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 6.6e-14 84.7 358 24.9
Psat6g188240 Pisum sativum HOM05D003253 ORTHO05D002078 6.6e-14 84.7 343 25.9
BolC5t29153H Brassica oleracea HOM05D003253 ORTHO05D002078 1.1e-13 84.0 347 25.9
Thecc.04G233500 Theobroma cacao HOM05D003253 ORTHO05D002078 1.5e-13 83.6 344 25.3
VMungo1215G2555 Vigna mungo HOM05D003253 ORTHO05D002078 1.5e-13 83.6 357 25.8
Psat0s3046g0120 Pisum sativum HOM05D003253 ORTHO05D002078 1.9e-13 83.2 326 25.2
Hund12120 Selenicereus undatus HOM05D003253 ORTHO05D002078 2.5e-13 82.8 316 27.5
Eucgr.H03453 Eucalyptus grandis HOM05D003253 ORTHO05D002078 3.3e-13 82.4 290 27.6
Psat6g206800 Pisum sativum HOM05D003253 ORTHO05D002078 5.6e-13 81.6 336 24.4
Aa31LG1G19210 Aethionema arabicum HOM05D003253 ORTHO05D002078 9.5e-13 80.9 345 24.9
BcaC05g24391 Brassica carinata HOM05D003253 ORTHO05D002078 9.5e-13 80.9 354 25.7
Thhalv10007544m.g Eutrema salsugineum HOM05D003253 ORTHO05D002078 9.5e-13 80.9 351 24.2
Solyc09g059740.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.5e-13 80.9 281 27.0
THA.LOC104800959 Tarenaya hassleriana HOM05D003253 ORTHO05D002078 1.2e-12 80.5 299 26.8
AT1G05410 Arabidopsis thaliana HOM05D003253 ORTHO05D002078 1.6e-12 80.1 347 23.9
LjContig00408g0013219 Lotus japonicus HOM05D003253 ORTHO05D002078 2.8e-12 79.3 303 27.4
BraA10t42682Z Brassica rapa HOM05D003253 ORTHO05D002078 6.1e-12 78.2 346 25.7
AL1G15260 Arabidopsis lyrata HOM05D003253 ORTHO05D002078 8.0e-12 77.8 350 24.3
CAN.G231.2 Capsicum annuum HOM05D003253 ORTHO05D002078 8.0e-12 77.8 187 28.9
ECA240G1510 Erigeron canadensis HOM05D003253 ORTHO05D002078 1.0e-11 77.4 397 23.7
Glyma.01G237400 Glycine max HOM05D003253 ORTHO05D002078 1.8e-11 76.6 367 25.1
Nitab4.5_0001920g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 2.3e-11 76.3 209 26.8
Prupe.1G015300 Prunus persica HOM05D003253 ORTHO05D002078 3.0e-11 75.9 215 27.4
Duzib052G0544 Durio zibethinus HOM05D003253 ORTHO05D002078 4.0e-11 75.5 358 25.1
Os03g0747200 Oryza sativa ssp. japonica HOM05D003253 ORTHO05D002078 6.8e-11 74.7 323 22.0
PGSC0003DMG400006740 Solanum tuberosum HOM05D003253 ORTHO05D002078 8.9e-11 74.3 164 29.3
Solyc06g054160.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.2e-10 73.9 146 31.5
CiPaw.02G097800 Carya illinoinensis HOM05D003253 ORTHO05D002078 1.5e-10 73.6 194 26.8
CARHR054160 Cardamine hirsuta HOM05D003253 ORTHO05D002078 2.0e-10 73.2 233 24.0
Glyma.18G119500 Glycine max HOM05D003253 ORTHO05D002078 2.0e-10 73.2 365 24.1
Sopen09g023100 Solanum pennellii HOM05D003253 ORTHO05D002078 2.0e-10 73.2 173 28.9
Nitab4.5_0001342g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 3.4e-10 72.4 172 29.7
Solyc06g054200.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.4e-10 72.4 206 26.2
PGSC0003DMG400041970 Solanum tuberosum HOM05D003253 ORTHO05D002078 4.4e-10 72.0 113 36.3
BcaC05g24390 Brassica carinata HOM05D003253 ORTHO05D002078 9.8e-10 70.9 169 27.8
Solyc06g054180.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.3e-09 70.5 168 27.4
PGSC0003DMG400016262 Solanum tuberosum HOM05D003253 ORTHO05D002078 2.2e-09 69.7 173 27.7
Solyc09g059910.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.9e-09 69.3 165 29.7
Solyc09g061260.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.9e-09 68.6 152 30.9
TPR.G5553 Trifolium pratense HOM05D003253 ORTHO05D002078 3.2e-08 65.9 192 26.0
Cc06_g18330 Coffea canephora HOM05D003253 ORTHO05D002078 5.4e-08 65.1 133 31.6
QL06p002114 Quercus lobata HOM05D003253 ORTHO05D002078 5.4e-08 65.1 396 24.5
SEGI_33412 Sequoiadendron giganteum HOM05D014402 ORTHO05D016488 5.4e-08 65.1 154 25.3
Solyc09g061370.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.2e-08 64.3 151 28.5
Sopen09g024360 Solanum pennellii HOM05D003253 ORTHO05D002078 3.5e-07 62.4 164 29.3
Mapoly0137s0011 Marchantia polymorpha HOM05D014402 ORTHO05D016488 4.6e-07 62.0 181 26.0
Cpa.g.sc58.97 Carica papaya HOM05D007130 ORTHO05D002078 1.0e-06 60.8 90 43.3
AT4G14840 Arabidopsis thaliana HOM05D007130 ORTHO05D002078 3.9e-06 58.9 113 38.9
AagrBONN_evm.TU.Sc2ySwM_117.1010 Anthoceros agrestis HOM05D014402 ORTHO05D016488 5.0e-06 58.5 151 25.8
CBR_g37656 Chara braunii HOM05D005465 ORTHO05D006612 8.6e-06 57.8 32 75.0


User provided reference genes

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