Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 6.2e-180 634.0 325 100.0
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 3.9e-73 279.3 237 60.8
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 2.8e-71 273.1 268 52.2
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 1.4e-67 260.8 216 58.8
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 3.6e-55 219.5 213 47.9
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 4.8e-55 219.2 274 41.2
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 1.1e-54 218.0 274 41.2
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.4e-54 217.6 263 41.1
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 6.9e-54 215.3 212 46.7
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 6.9e-54 215.3 212 49.5
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 2.0e-53 213.8 212 46.7
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 2.0e-53 213.8 224 49.6
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 3.4e-53 213.0 212 47.2
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 4.5e-53 212.6 270 41.5
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 7.6e-53 211.8 212 46.7
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 7.6e-53 211.8 212 46.7
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 9.9e-53 211.5 224 49.6
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 1.7e-52 210.7 212 47.2
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.7e-52 210.7 212 46.2
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 2.2e-52 210.3 212 46.2
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 2.2e-52 210.3 212 46.7
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 2.9e-52 209.9 213 46.5
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 4.9e-52 209.1 228 45.2
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 4.9e-52 209.1 212 46.2
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 6.4e-52 208.8 212 47.2
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 8.4e-52 208.4 212 45.8
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 1.1e-51 208.0 213 46.5
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 1.4e-51 207.6 212 46.2
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 1.4e-51 207.6 212 47.6
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 2.4e-51 206.8 212 45.8
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 3.2e-51 206.5 213 45.1
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 4.2e-51 206.1 212 45.8
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 4.2e-51 206.1 212 45.3
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 5.5e-51 205.7 212 45.8
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 5.5e-51 205.7 212 46.2
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 7.1e-51 205.3 212 46.2
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 7.1e-51 205.3 213 44.1
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 7.1e-51 205.3 265 40.8
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 9.3e-51 204.9 226 44.2
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 9.3e-51 204.9 268 40.3
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 1.2e-50 204.5 212 46.2
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 1.6e-50 204.1 212 47.6
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 2.1e-50 203.8 212 45.3
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 2.1e-50 203.8 213 44.6
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 2.1e-50 203.8 212 44.8
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 2.1e-50 203.8 226 44.2
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 2.7e-50 203.4 212 44.8
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 2.7e-50 203.4 212 46.7
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 3.5e-50 203.0 212 45.3
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 3.5e-50 203.0 212 44.8
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 6.0e-50 202.2 212 46.2
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 6.0e-50 202.2 225 44.9
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 7.9e-50 201.8 212 45.8
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 1.3e-49 201.1 212 43.9
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 1.8e-49 200.7 267 41.9
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 1.8e-49 200.7 212 44.3
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 2.3e-49 200.3 212 44.3
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 3.0e-49 199.9 225 44.9
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 5.1e-49 199.1 214 47.2
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 1.5e-48 197.6 212 44.8
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 1.9e-48 197.2 215 45.1
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 1.9e-48 197.2 227 44.9
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 1.9e-48 197.2 220 45.0
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 2.5e-48 196.8 212 44.8
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 5.6e-48 195.7 212 44.3
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 5.6e-48 195.7 247 41.3
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 9.6e-48 194.9 212 44.8
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 9.6e-48 194.9 205 47.3
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 1.3e-47 194.5 204 47.5
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 1.3e-47 194.5 212 44.8
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 1.3e-47 194.5 237 42.6
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.1e-47 193.7 209 45.0
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 2.8e-47 193.4 212 43.4
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 2.8e-47 193.4 212 45.3
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 3.7e-47 193.0 217 44.2
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 8.1e-47 191.8 212 43.9
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 1.1e-46 191.4 210 45.7
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 1.8e-46 190.7 242 42.6
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 3.1e-46 189.9 212 44.3
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 5.3e-46 189.1 212 43.9
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 3.4e-45 186.4 212 42.9
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 4.5e-45 186.0 177 46.9
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 7.6e-45 185.3 198 47.0
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 1.7e-44 184.1 241 40.7
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 3.8e-44 183.0 174 47.7
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 8.4e-44 181.8 212 42.9
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.4e-43 181.0 225 40.0
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.5e-43 180.3 174 47.1
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.2e-43 179.9 272 36.8
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 3.2e-43 179.9 212 43.4
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 5.5e-43 179.1 212 39.6
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 5.5e-43 179.1 263 38.0
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 7.1e-43 178.7 182 46.7
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 1.6e-42 177.6 206 42.7
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 2.1e-42 177.2 295 34.9
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 1.0e-41 174.9 211 41.7
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 1.3e-41 174.5 188 42.0
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 3.0e-41 173.3 184 43.5
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 5.1e-41 172.6 244 39.3
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 6.7e-41 172.2 184 42.4
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 7.4e-40 168.7 175 44.6
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 2.1e-39 167.2 164 47.0
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 1.8e-38 164.1 163 45.4
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 4.1e-38 162.9 172 45.9
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 4.1e-38 162.9 163 46.0
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 3.4e-37 159.8 178 42.7
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 3.4e-37 159.8 178 42.7
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 1.3e-36 157.9 174 43.7
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 1.3e-36 157.9 174 43.7
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 3.8e-36 156.4 268 34.7
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 2.5e-35 153.7 166 44.0
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 9.3e-35 151.8 163 42.9
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 1.6e-34 151.0 150 46.0
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.3e-33 147.9 142 50.7
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 1.3e-33 147.9 154 46.1
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 2.5e-32 143.7 196 38.3
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 5.9e-29 132.5 129 48.1
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 1.4e-27 127.9 275 32.4
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 2.1e-26 124.0 182 36.3
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 3.0e-25 120.2 106 51.9
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 2.4e-22 110.5 149 36.9
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 2.4e-22 110.5 105 47.6
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 7.7e-21 105.5 224 30.4
PRCOL_00000045 Prasinoderma coloniale HOM05D005379 ORTHO05D006661 1.3e-12 78.2 182 31.9
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 2.9e-12 77.0 86 40.7
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 1.5e-11 74.7 91 36.3
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 5.5e-11 72.8 80 42.5
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 7.2e-11 72.4 79 46.8
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 1.6e-10 71.2 80 42.5
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 5.2e-09 66.2 126 34.1
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 4.4e-08 63.2 67 40.3
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 2.8e-07 60.5 64 42.2
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 3.7e-07 60.1 45 53.3
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 1.4e-06 58.2 83 36.1


User provided reference genes

Program Settings