Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 2.7e-147 525.4 283 100.0
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 3.2e-55 219.5 189 58.2
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 1.9e-52 210.3 195 57.4
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 4.3e-52 209.1 189 57.7
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 6.2e-51 205.3 193 56.0
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 6.2e-51 205.3 194 57.2
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 8.1e-51 204.9 193 54.4
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.1e-50 204.5 196 54.6
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 1.8e-50 203.8 196 53.6
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 2.4e-50 203.4 193 54.4
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.4e-50 203.4 193 54.4
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 4.0e-50 202.6 189 57.1
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 6.9e-50 201.8 193 54.9
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 9.0e-50 201.4 189 55.6
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.2e-49 201.1 196 53.6
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.2e-49 201.1 209 51.7
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 1.5e-49 200.7 188 55.3
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 1.5e-49 200.7 192 55.7
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 2.0e-49 200.3 191 52.9
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 2.0e-49 200.3 189 56.6
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 2.6e-49 199.9 195 53.3
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 2.6e-49 199.9 189 57.1
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 3.4e-49 199.5 193 52.8
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 3.4e-49 199.5 196 52.0
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 4.4e-49 199.1 193 53.4
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 4.4e-49 199.1 192 54.7
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 5.8e-49 198.7 194 53.1
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 7.6e-49 198.4 190 56.3
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 7.6e-49 198.4 188 54.8
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 1.3e-48 197.6 193 51.8
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 1.7e-48 197.2 189 54.5
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.7e-48 197.2 188 54.3
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 1.7e-48 197.2 192 53.6
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 2.2e-48 196.8 188 54.3
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 2.2e-48 196.8 196 54.6
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 3.8e-48 196.1 186 52.7
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 3.8e-48 196.1 191 53.9
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 3.8e-48 196.1 189 55.0
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 4.9e-48 195.7 189 52.9
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 8.4e-48 194.9 193 53.4
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 8.4e-48 194.9 191 54.5
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.1e-47 194.5 186 58.1
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 1.1e-47 194.5 192 53.6
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 1.1e-47 194.5 189 52.4
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 1.1e-47 194.5 189 54.0
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 1.4e-47 194.1 186 55.9
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.4e-47 194.1 200 49.0
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 1.9e-47 193.7 189 52.9
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 3.2e-47 193.0 193 50.8
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 4.2e-47 192.6 186 54.8
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 4.2e-47 192.6 189 55.0
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 4.2e-47 192.6 200 52.5
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 9.3e-47 191.4 188 53.7
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 9.3e-47 191.4 191 54.5
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 1.2e-46 191.0 193 52.3
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.6e-46 190.7 193 52.8
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 1.6e-46 190.7 193 54.4
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 1.6e-46 190.7 189 54.5
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 2.1e-46 190.3 185 51.9
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 2.7e-46 189.9 233 48.5
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 3.5e-46 189.5 191 51.8
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 3.5e-46 189.5 189 51.9
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 4.6e-46 189.1 189 52.4
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 4.6e-46 189.1 191 53.4
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 6.0e-46 188.7 189 52.4
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 6.0e-46 188.7 189 52.4
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 6.0e-46 188.7 182 54.9
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 1.3e-45 187.6 192 52.1
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.3e-45 187.6 193 51.8
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.3e-45 187.6 189 52.4
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 3.0e-45 186.4 190 51.1
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 3.0e-45 186.4 190 51.6
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 3.9e-45 186.0 189 52.4
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 5.1e-45 185.7 192 51.6
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 5.1e-45 185.7 187 51.9
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 5.1e-45 185.7 183 53.6
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 6.6e-45 185.3 182 52.7
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 8.7e-45 184.9 187 53.5
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 8.7e-45 184.9 187 51.3
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 1.5e-44 184.1 171 55.6
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.9e-44 183.7 189 51.3
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 2.5e-44 183.3 194 50.5
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 5.6e-44 182.2 193 51.3
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 1.3e-43 181.0 188 53.2
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.6e-43 180.6 191 52.4
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.8e-43 179.9 170 54.1
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 4.8e-43 179.1 192 49.5
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 6.2e-43 178.7 189 53.4
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 8.1e-43 178.3 188 52.7
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 8.1e-43 178.3 186 50.5
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 1.8e-42 177.2 192 51.6
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 1.2e-41 174.5 196 51.0
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 1.2e-41 174.5 189 48.7
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 1.2e-41 174.5 188 50.0
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.5e-41 174.1 170 57.1
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.5e-41 174.1 193 48.7
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.5e-41 174.1 179 50.8
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 2.0e-41 173.7 192 47.9
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 4.5e-41 172.6 198 50.5
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 7.6e-41 171.8 170 52.4
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 2.2e-40 170.2 166 54.2
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 6.4e-40 168.7 169 53.3
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 6.4e-40 168.7 165 53.3
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 6.4e-40 168.7 177 53.7
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 1.9e-39 167.2 169 55.0
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 2.4e-39 166.8 169 52.7
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 5.4e-39 165.6 168 53.6
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 9.3e-39 164.9 169 55.0
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 9.3e-39 164.9 188 47.3
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 1.2e-38 164.5 166 53.0
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 2.1e-38 163.7 166 53.6
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 3.5e-38 162.9 166 53.6
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 6.0e-38 162.2 166 54.8
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 7.9e-38 161.8 173 52.0
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 1.8e-37 160.6 192 47.9
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 2.3e-37 160.2 169 49.1
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 2.3e-37 160.2 143 58.0
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 3.9e-37 159.5 143 57.3
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 8.7e-37 158.3 177 48.0
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 3.3e-36 156.4 181 49.2
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 5.6e-36 155.6 188 50.5
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 9.0e-34 148.3 169 47.9
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.2e-33 147.9 167 50.3
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.2e-31 139.8 150 50.0
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 6.0e-30 135.6 191 40.8
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 3.9e-29 132.9 107 59.8
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 1.5e-28 131.0 191 40.8
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 6.2e-27 125.6 129 51.2
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 3.2e-23 113.2 129 50.4
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 1.1e-20 104.8 132 47.7
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.5e-20 103.6 125 48.0
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 4.8e-19 99.4 115 49.6
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 7.7e-17 92.0 169 38.5
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 7.4e-12 75.5 160 35.0
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 7.4e-12 75.5 195 34.9
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 6.3e-11 72.4 178 33.7
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 1.4e-10 71.2 176 30.1
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 3.1e-10 70.1 169 30.2
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 5.3e-10 69.3 176 35.2
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 9.1e-10 68.6 182 30.2
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.5e-09 67.8 176 30.7
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 2.0e-09 67.4 172 32.0
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 2.6e-09 67.0 173 28.9
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 2.6e-09 67.0 173 30.1
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 3.4e-09 66.6 182 28.6
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 4.5e-09 66.2 172 29.7
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 5.9e-09 65.9 176 30.1
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 5.9e-09 65.9 173 30.1
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 1.3e-08 64.7 174 31.0
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 1.7e-08 64.3 176 29.0
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 1.7e-08 64.3 176 26.7
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 1.7e-08 64.3 183 29.0
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 2.9e-08 63.5 172 30.2
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 2.9e-08 63.5 172 30.2
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 3.8e-08 63.2 176 27.3
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 3.8e-08 63.2 173 31.8
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 3.8e-08 63.2 170 30.0
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 5.0e-08 62.8 179 30.2
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 1.1e-07 61.6 173 28.9
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 1.4e-07 61.2 178 32.0
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 1.9e-07 60.8 174 28.7
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 1.9e-07 60.8 174 28.7
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 3.2e-07 60.1 173 30.1
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 3.2e-07 60.1 173 28.9
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 7.2e-07 58.9 173 28.9
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 7.2e-07 58.9 176 25.6
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 7.2e-07 58.9 173 28.9
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 9.4e-07 58.5 175 28.6
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 1.2e-06 58.2 191 27.7
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 2.1e-06 57.4 192 25.5
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 3.6e-06 56.6 173 28.3
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 3.6e-06 56.6 49 59.2


User provided reference genes

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