Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48367 Chara braunii HOM05D003473 ORTHO05D003872 0.0e+00 1714.1 853 100.0
CBR_g48364 Chara braunii HOM05D003473 ORTHO05D003872 0.0e+00 1112.1 780 73.7
CBR_g23900 Chara braunii HOM05D003473 ORTHO05D003872 2.3e-210 736.5 890 48.1
CBR_g40386 Chara braunii HOM05D003473 ORTHO05D003872 8.8e-133 478.8 614 42.0
CBR_g1013 Chara braunii HOM05D003473 ORTHO05D003872 9.1e-122 442.2 625 39.2
AagrBONN_evm.TU.Sc2ySwM_344.2742 Anthoceros agrestis HOM05D003473 ORTHO05D003872 8.1e-78 296.2 506 32.6
MSTRG.8227 Avicennia marina HOM05D003473 ORTHO05D003872 9.8e-76 289.3 538 34.8
Lalb_Chr06g0168251 Lupinus albus HOM05D003473 ORTHO05D003872 1.3e-75 288.9 503 35.0
arahy.Tifrunner.gnm1.ann1.T51LW4 Arachis hypogaea HOM05D003473 ORTHO05D003872 2.9e-75 287.7 503 34.8
ECA238G4809 Erigeron canadensis HOM05D003473 ORTHO05D003872 2.9e-75 287.7 511 35.4
Lj5g0017612 Lotus japonicus HOM05D003473 ORTHO05D003872 2.9e-75 287.7 515 35.1
Lalb_Chr02g0149051 Lupinus albus HOM05D003473 ORTHO05D003872 3.7e-75 287.3 503 34.8
Lsat_1_v5_gn_2_108280 Lactuca sativa HOM05D003473 ORTHO05D003872 8.3e-75 286.2 514 36.2
HPP92_020845 Vanilla planifolia HOM05D003473 ORTHO05D003872 2.4e-74 284.6 512 34.2
arahy.Tifrunner.gnm1.ann1.F06EBP Arachis hypogaea HOM05D003473 ORTHO05D003872 4.1e-74 283.9 505 34.9
arahy.Tifrunner.gnm1.ann1.K8P0T6 Arachis hypogaea HOM05D003473 ORTHO05D003872 4.1e-74 283.9 503 33.0
PGR142G0316 Punica granatum HOM05D003473 ORTHO05D003872 5.4e-74 283.5 503 36.2
TPR.G22327 Trifolium pratense HOM05D003473 ORTHO05D003872 1.6e-73 282.0 502 33.3
Migut.F01540 Erythranthe guttata HOM05D003473 ORTHO05D003872 2.7e-73 281.2 506 35.0
MELO3C008699.2 Cucumis melo HOM05D003473 ORTHO05D003872 3.5e-73 280.8 508 34.6
Hma1.2p1_1007F.1_g247110 Hydrangea macrophylla HOM05D003473 ORTHO05D003872 4.6e-73 280.4 504 34.1
CBR_g57532 Chara braunii HOM05D003473 ORTHO05D003872 1.0e-72 279.3 672 31.2
HanXRQChr14g0454231 Helianthus annuus HOM05D003473 ORTHO05D003872 1.0e-72 279.3 507 36.1
Sc20g0000670 Simmondsia chinensis HOM05D003473 ORTHO05D003872 1.3e-72 278.9 506 34.0
SGA_v2.0_scaffold2G01010 Striga asiatica HOM05D003473 ORTHO05D003872 1.3e-72 278.9 524 34.7
TAR362G0719 Trochodendron aralioides HOM05D003473 ORTHO05D003872 1.3e-72 278.9 510 34.1
Dinv25278 Davidia involucrata HOM05D003473 ORTHO05D003872 2.3e-72 278.1 504 35.3
Medtr1g080320 Medicago truncatula HOM05D003473 ORTHO05D003872 2.3e-72 278.1 502 33.9
Ciclev10019419m.g Citrus clementina HOM05D003473 ORTHO05D003872 3.0e-72 277.7 536 33.8
Sed0013546 Sechium edule HOM05D003473 ORTHO05D003872 3.0e-72 277.7 506 35.4
Glyma.20G223600 Glycine max HOM05D003473 ORTHO05D003872 3.9e-72 277.3 507 33.1
ClCG11G010530 Citrullus lanatus HOM05D003473 ORTHO05D003872 5.1e-72 276.9 509 34.6
Dinv15516 Davidia involucrata HOM05D003473 ORTHO05D003872 5.1e-72 276.9 504 35.3
CBR_g34948 Chara braunii HOM05D003473 ORTHO05D003872 6.6e-72 276.6 553 30.7
Nitab4.5_0011129g0030 Nicotiana tabacum HOM05D003473 ORTHO05D003872 8.6e-72 276.2 531 32.8
Nn1g02856 Nelumbo nucifera HOM05D003473 ORTHO05D003872 1.5e-71 275.4 505 33.7
Nitab4.5_0001913g0170 Nicotiana tabacum HOM05D003473 ORTHO05D003872 1.5e-71 275.4 531 33.0
Potri.013G047600 Populus trichocarpa HOM05D003473 ORTHO05D003872 1.9e-71 275.0 504 34.7
Phvul.L001660 Phaseolus vulgaris HOM05D003473 ORTHO05D003872 2.5e-71 274.6 515 32.6
Glyma.03G250300 Glycine max HOM05D003473 ORTHO05D003872 4.3e-71 273.9 508 33.3
EL10Ac4g08995 Beta vulgaris HOM05D003473 ORTHO05D003872 5.6e-71 273.5 511 33.5
AUR62004830 Chenopodium quinoa HOM05D003473 ORTHO05D003872 5.6e-71 273.5 511 33.7
Glyma.10G165600 Glycine max HOM05D003473 ORTHO05D003872 5.6e-71 273.5 509 32.8
Oeu014528.1 Olea europaea HOM05D003473 ORTHO05D003872 7.3e-71 273.1 490 34.3
Peaxi162Scf00718g00014 Petunia axillaris HOM05D003473 ORTHO05D003872 7.3e-71 273.1 509 33.2
Cc02_g08740 Coffea canephora HOM05D003473 ORTHO05D003872 9.5e-71 272.7 515 34.4
AagrBONN_evm.TU.Sc2ySwM_228.1748 Anthoceros agrestis HOM05D003473 ORTHO05D003872 1.2e-70 272.3 509 31.2
Aqoxy2G03708 Aquilegia oxysepala HOM05D003473 ORTHO05D003872 1.6e-70 271.9 513 33.3
Ca_09457_v3 Cicer arietinum L. HOM05D003473 ORTHO05D003872 1.6e-70 271.9 506 33.0
CsaV3_2G009860 Cucumis sativus L. HOM05D003473 ORTHO05D003872 2.1e-70 271.6 507 34.5
TPR.G6958 Trifolium pratense HOM05D003473 ORTHO05D003872 2.1e-70 271.6 509 33.2
Potri.019G019800 Populus trichocarpa HOM05D003473 ORTHO05D003872 3.6e-70 270.8 502 33.9
PGSC0003DMG400028063 Solanum tuberosum HOM05D003473 ORTHO05D003872 3.6e-70 270.8 509 34.4
AagrBONN_evm.TU.Sc2ySwM_228.1715 Anthoceros agrestis HOM05D003473 ORTHO05D003872 6.2e-70 270.0 526 32.3
AUR62040917 Chenopodium quinoa HOM05D003473 ORTHO05D003872 8.1e-70 269.6 499 33.1
SalBow6G1341 Salvia bowleyana HOM05D003473 ORTHO05D003872 1.4e-69 268.9 548 33.6
Thecc.05G270100 Theobroma cacao HOM05D003473 ORTHO05D003872 1.4e-69 268.9 533 34.0
AagrBONN_evm.TU.Sc2ySwM_228.1714 Anthoceros agrestis HOM05D003473 ORTHO05D003872 1.8e-69 268.5 519 35.1
CAN.G24.3 Capsicum annuum HOM05D003473 ORTHO05D003872 1.8e-69 268.5 514 33.7
Manes.08G140000 Manihot esculenta HOM05D003473 ORTHO05D003872 2.3e-69 268.1 577 31.9
Medtr7g115570 Medicago truncatula HOM05D003473 ORTHO05D003872 2.3e-69 268.1 504 33.1
Psat3g006840 Pisum sativum HOM05D003473 ORTHO05D003872 2.3e-69 268.1 505 33.5
GSVIVG01023451001 Vitis vinifera HOM05D003473 ORTHO05D003872 2.3e-69 268.1 506 34.2
SMO145G0097 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 3.1e-69 267.7 500 32.4
ATR0736G092 Amborella trichopoda HOM05D003473 ORTHO05D003872 5.2e-69 266.9 505 33.3
CiPaw.07G073400 Carya illinoinensis HOM05D003473 ORTHO05D003872 8.9e-69 266.2 507 33.9
Aa31LG11G8510 Aethionema arabicum HOM05D003473 ORTHO05D003872 1.2e-68 265.8 514 33.1
Os02g0809500 Oryza sativa ssp. japonica HOM05D003473 ORTHO05D003872 1.2e-68 265.8 510 33.1
PSO017G4386 Papaver somniferum HOM05D003473 ORTHO05D003872 1.2e-68 265.8 575 31.8
TWI56G1190 Tripterygium wilfordii HOM05D003473 ORTHO05D003872 2.6e-68 264.6 565 32.4
Cpa.g.sc306.6 Carica papaya HOM05D003473 ORTHO05D003872 3.4e-68 264.2 537 32.4
SMO241G0001 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 5.8e-68 263.5 499 32.5
MSTRG.314 Avicennia marina HOM05D003473 ORTHO05D003872 7.6e-68 263.1 509 33.8
MD12G1249300 Malus domestica HOM05D003473 ORTHO05D003872 7.6e-68 263.1 503 34.4
Ca_10021_v3 Cicer arietinum L. HOM05D003473 ORTHO05D003872 9.9e-68 262.7 500 33.0
Ca_29585_v3 Cicer arietinum L. HOM05D003473 ORTHO05D003872 9.9e-68 262.7 500 33.0
QL03p029857 Quercus lobata HOM05D003473 ORTHO05D003872 9.9e-68 262.7 536 33.0
FAN09G4673 Fragaria x ananassa HOM05D003473 ORTHO05D003872 1.3e-67 262.3 500 34.0
Lj2C44G25 Lonicera japonica HOM05D003473 ORTHO05D003872 1.7e-67 261.9 508 33.3
Prupe.6G350700 Prunus persica HOM05D003473 ORTHO05D003872 1.7e-67 261.9 506 34.0
TWI36G0550 Tripterygium wilfordii HOM05D003473 ORTHO05D003872 2.2e-67 261.5 559 32.9
Thhalv10003947m.g Eutrema salsugineum HOM05D003473 ORTHO05D003872 3.7e-67 260.8 438 35.2
Hma1.2p1_1007F.1_g247120 Hydrangea macrophylla HOM05D003473 ORTHO05D003872 3.7e-67 260.8 504 33.3
BcaC04g23717 Brassica carinata HOM05D003473 ORTHO05D003872 4.9e-67 260.4 438 35.2
RcHm_v2.0_Chr3g0449501 Rosa chinensis HOM05D003473 ORTHO05D003872 4.9e-67 260.4 501 33.3
PSO063G4417 Papaver somniferum HOM05D003473 ORTHO05D003872 6.4e-67 260.0 505 33.1
BcaNung02116 Brassica carinata HOM05D003473 ORTHO05D003872 8.4e-67 259.6 444 33.6
A09p05020 Brassica napus HOM05D003473 ORTHO05D003872 8.4e-67 259.6 438 34.5
C09p05430 Brassica napus HOM05D003473 ORTHO05D003872 8.4e-67 259.6 438 34.9
BolC7t44541H Brassica oleracea HOM05D003473 ORTHO05D003872 8.4e-67 259.6 444 33.6
BraA09t36141Z Brassica rapa HOM05D003473 ORTHO05D003872 8.4e-67 259.6 438 34.9
MD04G1231000 Malus domestica HOM05D003473 ORTHO05D003872 8.4e-67 259.6 505 34.7
SMO232G0001 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 8.4e-67 259.6 501 32.5
C07p40060 Brassica napus HOM05D003473 ORTHO05D003872 1.1e-66 259.2 438 33.6
AagrBONN_evm.TU.Sc2ySwM_344.2023 Anthoceros agrestis HOM05D003473 ORTHO05D003872 1.9e-66 258.5 511 30.9
BcaC06g30691 Brassica carinata HOM05D003473 ORTHO05D003872 1.9e-66 258.5 440 34.3
BraA06t26728Z Brassica rapa HOM05D003473 ORTHO05D003872 2.4e-66 258.1 446 33.9
SMO351G0042 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 2.4e-66 258.1 520 32.3
FAN05G2419 Fragaria x ananassa HOM05D003473 ORTHO05D003872 4.1e-66 257.3 506 33.0
THA.LOC104820771 Tarenaya hassleriana HOM05D003473 ORTHO05D003872 4.1e-66 257.3 497 32.8
A06p38150 Brassica napus HOM05D003473 ORTHO05D003872 5.4e-66 256.9 440 33.6
BolC9t53472H Brassica oleracea HOM05D003473 ORTHO05D003872 7.1e-66 256.5 438 34.0
FvH4_6g01760 Fragaria vesca HOM05D003473 ORTHO05D003872 1.2e-65 255.8 505 33.1
Gorai.007G275200 Gossypium raimondii HOM05D003473 ORTHO05D003872 1.2e-65 255.8 505 33.3
AL6G40940 Arabidopsis lyrata HOM05D003473 ORTHO05D003872 1.6e-65 255.4 437 34.1
FAN14G5108 Fragaria x ananassa HOM05D003473 ORTHO05D003872 2.1e-65 255.0 505 33.1
Gohir.D11G256800 Gossypium hirsutum HOM05D003473 ORTHO05D003872 2.1e-65 255.0 505 33.1
CANSAT54G3011 Cannabis sativa HOM05D003473 ORTHO05D003872 2.7e-65 254.6 605 30.6
FAN05G0941 Fragaria x ananassa HOM05D003473 ORTHO05D003872 3.5e-65 254.2 506 32.8
Gohir.A11G246500 Gossypium hirsutum HOM05D003473 ORTHO05D003872 4.6e-65 253.8 505 32.9
Eucgr.B02153 Eucalyptus grandis HOM05D003473 ORTHO05D003872 1.3e-64 252.3 519 32.4
Carub.0007s3766 Capsella rubella HOM05D003473 ORTHO05D003872 1.7e-64 251.9 445 33.3
Cfa006361 Carpinus fangiana HOM05D003473 ORTHO05D003872 1.7e-64 251.9 530 32.5
Carub.0006s2614 Capsella rubella HOM05D003473 ORTHO05D003872 2.3e-64 251.5 440 33.9
CARHR185420 Cardamine hirsuta HOM05D003473 ORTHO05D003872 2.3e-64 251.5 499 31.9
Haze_04416 Corylus avellana HOM05D003473 ORTHO05D003872 2.3e-64 251.5 546 32.6
Duzib128G0977 Durio zibethinus HOM05D003473 ORTHO05D003872 2.3e-64 251.5 502 32.9
Lj3g0009325 Lotus japonicus HOM05D003473 ORTHO05D003872 2.3e-64 251.5 499 32.3
Duzib177G0657 Durio zibethinus HOM05D003473 ORTHO05D003872 3.0e-64 251.1 528 33.0
FAN14G1733 Fragaria x ananassa HOM05D003473 ORTHO05D003872 3.0e-64 251.1 505 32.9
DCAR_030978 Daucus carota HOM05D003473 ORTHO05D003872 6.6e-64 250.0 510 32.7
Sopen06g012690 Solanum pennellii HOM05D003473 ORTHO05D003872 8.6e-64 249.6 500 32.6
Sp2g19990 Schrenkiella parvula HOM05D003473 ORTHO05D003872 1.1e-63 249.2 440 33.6
Solyc06g036640.4 Solanum lycopersicum HOM05D003473 ORTHO05D003872 1.1e-63 249.2 500 32.6
AT5G28960 Arabidopsis thaliana HOM05D003473 ORTHO05D003872 1.9e-63 248.4 439 34.4
Eucgr.B02152 Eucalyptus grandis HOM05D003473 ORTHO05D003872 1.9e-63 248.4 536 32.3
SMO116G0126 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 2.5e-63 248.1 506 31.2
CDE08G1169 Ceratophyllum demersum HOM05D003473 ORTHO05D003872 5.6e-63 246.9 508 32.1
VMungo0720G0613 Vigna mungo HOM05D003473 ORTHO05D003872 5.6e-63 246.9 429 34.5
Aa31LG5G14900 Aethionema arabicum HOM05D003473 ORTHO05D003872 1.2e-62 245.7 497 31.4
vmacro10372 Vaccinium macrocarpon HOM05D003473 ORTHO05D003872 1.2e-62 245.7 532 32.1
BcaB04g19636 Brassica carinata HOM05D003473 ORTHO05D003872 2.1e-62 245.0 438 34.2
Eucgr.B02425 Eucalyptus grandis HOM05D003473 ORTHO05D003872 2.1e-62 245.0 440 34.5
AT5G28910 Arabidopsis thaliana HOM05D003473 ORTHO05D003872 3.6e-62 244.2 445 32.8
Carub.0006s2613 Capsella rubella HOM05D003473 ORTHO05D003872 1.8e-61 241.9 437 33.0
SMO351G0391 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 5.2e-61 240.4 432 32.2
SMO241G0014 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.5e-60 238.8 438 33.1
SMO241G0019 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.5e-60 238.8 443 34.1
Sabra13G0043500 Salix brachista HOM05D003473 ORTHO05D003872 2.0e-60 238.4 504 32.7
SMO232G0128 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 2.9e-59 234.6 438 32.6
MBI07_g22622_MAGBIO Magnolia biondii HOM05D003473 ORTHO05D003872 6.0e-57 226.9 425 33.6
SMO347G0181 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.7e-56 225.3 500 30.2
Atru.chr2.998 Acer truncatum HOM05D003473 ORTHO05D003872 3.9e-56 224.2 402 35.6
Carub.0006s2615 Capsella rubella HOM05D003473 ORTHO05D003872 2.8e-54 218.0 438 31.5
CSS0019381 Camellia sinensis var. sinensis HOM05D003473 ORTHO05D003872 1.8e-53 215.3 521 30.9
DCAR_030022 Daucus carota HOM05D003473 ORTHO05D003872 1.8e-53 215.3 568 28.5
SMO232G0138 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.8e-53 215.3 448 32.4
COL.COLO4_15495 Corchorus olitorius HOM05D003473 ORTHO05D003872 1.9e-50 205.3 436 33.3
Oeu014529.1 Olea europaea HOM05D003473 ORTHO05D003872 2.7e-49 201.4 310 37.4
Carub.0048s0001 Capsella rubella HOM05D003473 ORTHO05D003872 6.0e-49 200.3 445 29.2
Psat6g143640 Pisum sativum HOM05D003473 ORTHO05D003872 6.0e-49 200.3 305 37.7
SMO232G0037 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 2.3e-48 198.4 421 32.5
Sabra19G0032100 Salix brachista HOM05D003473 ORTHO05D003872 7.6e-44 183.3 680 26.9
SMO235G0055 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.9e-42 178.7 480 29.8
SMO232G0114 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.2e-41 176.0 498 28.9
FAN02G1417 Fragaria x ananassa HOM05D003473 ORTHO05D003872 3.5e-41 174.5 404 31.4
unitig_749.g14017 Utricularia gibba HOM05D003473 ORTHO05D003872 4.3e-39 167.5 339 33.9
Actinidia38934 Actinidia chinensis HOM05D003473 ORTHO05D003872 1.8e-32 145.6 192 42.2
SMO241G0018 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 6.9e-29 133.7 439 26.0
Actinidia38935 Actinidia chinensis HOM05D003473 ORTHO05D003872 3.2e-26 124.8 240 32.5
Rhsim09G0135200 Rhododendron simsii HOM05D003473 ORTHO05D003872 8.7e-24 116.7 248 30.2
RhsimUnG0083500 Rhododendron simsii HOM05D003473 ORTHO05D003872 3.3e-23 114.8 233 30.5
SEGI_25367 Sequoiadendron giganteum HOM05D003473 ORTHO05D003872 3.3e-23 114.8 232 29.7
Rhsim09G0135600 Rhododendron simsii HOM05D003473 ORTHO05D003872 9.7e-23 113.2 249 30.1
unitig_749.g14016 Utricularia gibba HOM05D003473 ORTHO05D003872 2.8e-22 111.7 228 31.6
Rhsim09G0136100 Rhododendron simsii HOM05D003473 ORTHO05D003872 1.8e-21 109.0 268 27.6
Rhsim09G0136500 Rhododendron simsii HOM05D003473 ORTHO05D003872 3.1e-21 108.2 278 27.7
GSVIVG01023448001 Vitis vinifera HOM05D003473 ORTHO05D003872 5.3e-21 107.5 91 54.9
Rhsim09G0136000 Rhododendron simsii HOM05D003473 ORTHO05D003872 9.0e-21 106.7 251 27.5
MBI07_g31076_MAGBIO Magnolia biondii HOM05D003473 ORTHO05D003872 3.8e-19 101.3 345 26.7
Rhsim09G0136400 Rhododendron simsii HOM05D003473 ORTHO05D003872 1.9e-18 99.0 267 27.3
SGA_v2.0_scaffold18G08388 Striga asiatica HOM05D003473 ORTHO05D003872 9.4e-18 96.7 268 30.6
DCAR_030014 Daucus carota HOM05D003473 ORTHO05D003872 2.1e-17 95.5 141 36.9
A03p39790 Brassica napus HOM05D003473 ORTHO05D003872 1.4e-16 92.8 154 33.1
SMO241G0005 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 8.8e-16 90.1 149 35.6
AagrBONN_evm.TU.Sc2ySwM_228.1749 Anthoceros agrestis HOM05D003473 ORTHO05D003872 5.7e-15 87.4 151 35.1
SGA_v2.0_scaffold158G37446 Striga asiatica HOM05D003473 ORTHO05D003872 4.8e-14 84.3 284 29.2
Rhsim09G0136200 Rhododendron simsii HOM05D003473 ORTHO05D003872 1.3e-11 76.3 249 23.3
SEGI_32914 Sequoiadendron giganteum HOM05D003473 ORTHO05D003872 3.8e-11 74.7 157 29.9
MBI07_g26633_MAGBIO Magnolia biondii HOM05D003473 ORTHO05D003872 7.2e-10 70.5 158 27.2
BcaNung02115 Brassica carinata HOM05D003473 ORTHO05D003872 3.3e-07 61.6 88 33.0
C07p40070 Brassica napus HOM05D003473 ORTHO05D003872 3.3e-07 61.6 70 37.1
BolC7t44543H Brassica oleracea HOM05D003473 ORTHO05D003872 3.3e-07 61.6 70 37.1
Cre10.g449050 Chlamydomonas reinhardtii HOM05D022126 ORTHO05D003872 9.7e-07 60.1 426 21.1


User provided reference genes

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