Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48322 Chara braunii HOM05D003476 ORTHO05D004057 1.0e-79 300.1 154 100.0
CDE04G3620 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 1.1e-25 120.6 165 41.8
Dinv20956 Davidia involucrata HOM05D003476 ORTHO05D004057 3.2e-25 119.0 132 48.5
Dinv20987 Davidia involucrata HOM05D003476 ORTHO05D004057 3.2e-25 119.0 132 48.5
vmacro10062 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 2.7e-24 115.9 108 54.6
C03p26520 Brassica napus HOM05D003476 ORTHO05D004057 3.5e-24 115.5 107 56.1
BcaC01g05451 Brassica carinata HOM05D003476 ORTHO05D004057 7.8e-24 114.4 107 55.1
Cc02_g06910 Coffea canephora HOM05D003476 ORTHO05D004057 1.0e-23 114.0 108 54.6
FvH4_7g24030 Fragaria vesca HOM05D003476 ORTHO05D004057 1.0e-23 114.0 107 55.1
FAN01G1497 Fragaria x ananassa HOM05D003476 ORTHO05D004057 1.0e-23 114.0 107 55.1
C04p67700 Brassica napus HOM05D003476 ORTHO05D004057 1.3e-23 113.6 107 54.2
RcHm_v2.0_Chr1g0369411 Rosa chinensis HOM05D003476 ORTHO05D004057 1.7e-23 113.2 107 54.2
CARHR134880 Cardamine hirsuta HOM05D003476 ORTHO05D004057 2.3e-23 112.8 107 54.2
Aqoxy2G00973 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 3.0e-23 112.5 165 43.0
A05p06460 Brassica napus HOM05D003476 ORTHO05D004057 3.0e-23 112.5 117 52.1
Thhalv10017265m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 3.9e-23 112.1 106 53.8
THA.LOC104824307 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 3.9e-23 112.1 107 55.1
PGSC0003DMG400025078 Solanum tuberosum HOM05D003476 ORTHO05D004057 5.1e-23 111.7 107 52.3
AL4G37540 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 6.6e-23 111.3 106 54.7
TWI09G0086 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 6.6e-23 111.3 107 55.1
TWI23G0971 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 6.6e-23 111.3 107 55.1
A03p22400 Brassica napus HOM05D003476 ORTHO05D004057 8.7e-23 110.9 106 53.8
Carub.0004s2209 Capsella rubella HOM05D003476 ORTHO05D004057 8.7e-23 110.9 106 53.8
Nn2g13624 Nelumbo nucifera HOM05D003476 ORTHO05D004057 8.7e-23 110.9 107 51.4
Nitab4.5_0003770g0040 Nicotiana tabacum HOM05D003476 ORTHO05D004057 8.7e-23 110.9 108 51.9
Solyc04g072032.1 Solanum lycopersicum HOM05D003476 ORTHO05D004057 8.7e-23 110.9 107 52.3
Mapoly0043s0045 Marchantia polymorpha HOM05D003476 ORTHO05D004057 1.1e-22 110.5 201 35.8
GSVIVG01016365001 Vitis vinifera HOM05D003476 ORTHO05D004057 1.1e-22 110.5 107 54.2
Actinidia00934 Actinidia chinensis HOM05D003476 ORTHO05D004057 1.5e-22 110.2 107 51.4
AT2G39960 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 1.5e-22 110.2 106 53.8
BcaB01g03582 Brassica carinata HOM05D003476 ORTHO05D004057 1.5e-22 110.2 106 53.8
SalBow6G0374 Salvia bowleyana HOM05D003476 ORTHO05D004057 1.5e-22 110.2 107 56.1
TWI53G1335 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.5e-22 110.2 107 54.2
Duzib114G0190 Durio zibethinus HOM05D003476 ORTHO05D004057 1.9e-22 109.8 151 43.0
Sp4g22270 Schrenkiella parvula HOM05D003476 ORTHO05D004057 1.9e-22 109.8 109 54.1
THA.LOC104810073 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 1.9e-22 109.8 107 54.2
AagrBONN_evm.TU.Sc2ySwM_228.5499 Anthoceros agrestis HOM05D003476 ORTHO05D004057 2.5e-22 109.4 93 59.1
Dinv34422 Davidia involucrata HOM05D002885 ORTHO05D003350 2.5e-22 109.4 132 47.7
A04p30180 Brassica napus HOM05D003476 ORTHO05D004057 3.3e-22 109.0 104 53.8
Sabra10G0148300 Salix brachista HOM05D003476 ORTHO05D004057 3.3e-22 109.0 151 40.4
SEGI_14870 Sequoiadendron giganteum HOM05D003476 ORTHO05D004057 3.3e-22 109.0 107 53.3
Aa31LG5G19650 Aethionema arabicum HOM05D003476 ORTHO05D004057 4.3e-22 108.6 149 44.3
Os02g0565200 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 4.3e-22 108.6 105 52.4
CiPaw.02G189900 Carya illinoinensis HOM05D003476 ORTHO05D004057 5.6e-22 108.2 107 53.3
AT4G04200 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 7.3e-22 107.8 106 52.8
BraA05t19614Z Brassica rapa HOM05D003476 ORTHO05D004057 7.3e-22 107.8 109 54.1
Sed0009203 Sechium edule HOM05D003476 ORTHO05D004057 7.3e-22 107.8 107 51.4
BcaC02g07386 Brassica carinata HOM05D003476 ORTHO05D004057 9.6e-22 107.5 104 52.9
BolC4t28272H Brassica oleracea HOM05D003476 ORTHO05D004057 9.6e-22 107.5 104 52.9
Gohir.A10G229700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 9.6e-22 107.5 107 53.3
Gohir.A13G016600 Gossypium hirsutum HOM05D003476 ORTHO05D004057 9.6e-22 107.5 107 51.4
Thecc.10G026100 Theobroma cacao HOM05D003476 ORTHO05D004057 9.6e-22 107.5 107 52.3
TAR633G1753 Trochodendron aralioides HOM05D003476 ORTHO05D004057 9.6e-22 107.5 107 52.3
BcaB06g29118 Brassica carinata HOM05D003476 ORTHO05D004057 1.3e-21 107.1 104 52.9
C04p07540 Brassica napus HOM05D003476 ORTHO05D004057 1.3e-21 107.1 109 53.2
BolC4t22371H Brassica oleracea HOM05D003476 ORTHO05D004057 1.3e-21 107.1 109 53.2
TAR636G1152 Trochodendron aralioides HOM05D003476 ORTHO05D004057 1.3e-21 107.1 107 52.3
AL6G47820 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 1.6e-21 106.7 107 52.3
CSS0000698 Camellia sinensis var. sinensis HOM05D003476 ORTHO05D004057 1.6e-21 106.7 107 51.4
Gohir.D13G017700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 1.6e-21 106.7 107 52.3
PSO801G0598 Papaver somniferum HOM05D003476 ORTHO05D004057 1.6e-21 106.7 107 50.5
TWI73G1058 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.6e-21 106.7 107 52.3
Zm00001eb081650 Zea mays HOM05D003476 ORTHO05D004057 1.6e-21 106.7 181 36.5
CARHR253310 Cardamine hirsuta HOM05D003476 ORTHO05D004057 2.1e-21 106.3 106 51.9
Gorai.013G019600 Gossypium raimondii HOM05D003476 ORTHO05D004057 2.1e-21 106.3 107 52.3
Hma1.2p1_2137F.1_g314920 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 2.8e-21 105.9 107 51.4
Carub.0006s3211 Capsella rubella HOM05D003476 ORTHO05D004057 3.6e-21 105.5 106 50.9
CAN.G1252.7 Capsicum annuum HOM05D003476 ORTHO05D004057 3.6e-21 105.5 176 39.2
CsaV3_5G008920 Cucumis sativus L. HOM05D003476 ORTHO05D004057 3.6e-21 105.5 148 43.2
Manes.10G017601 Manihot esculenta HOM05D003476 ORTHO05D004057 3.6e-21 105.5 107 50.5
PSO339G6737 Papaver somniferum HOM05D003476 ORTHO05D004057 3.6e-21 105.5 107 49.5
AUR62031591 Chenopodium quinoa HOM05D003476 ORTHO05D004057 4.8e-21 105.1 149 41.6
Gorai.011G280300 Gossypium raimondii HOM05D003476 ORTHO05D004057 4.8e-21 105.1 106 52.8
Potri.008G064700 Populus trichocarpa HOM05D003476 ORTHO05D004057 4.8e-21 105.1 107 49.5
SpUn0110_0020 Schrenkiella parvula HOM05D003476 ORTHO05D004057 4.8e-21 105.1 129 44.2
DCAR_011789 Daucus carota HOM05D003476 ORTHO05D004057 6.2e-21 104.8 107 50.5
TWI73G1048 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 6.2e-21 104.8 107 51.4
MSTRG.8311 Avicennia marina HOM05D003476 ORTHO05D004057 8.1e-21 104.4 107 48.6
Sc09g0010500 Simmondsia chinensis HOM05D003476 ORTHO05D004057 8.1e-21 104.4 107 49.5
Ah.10g035550 Amaranthus hybridus HOM05D003476 ORTHO05D004057 1.1e-20 104.0 149 42.3
Psat2g035640 Pisum sativum HOM05D003476 ORTHO05D004057 1.4e-20 103.6 134 44.8
Sp6g04580 Schrenkiella parvula HOM05D003476 ORTHO05D004057 1.4e-20 103.6 106 50.9
Sed0008497 Sechium edule HOM05D003476 ORTHO05D004057 1.4e-20 103.6 107 51.4
TPR.G8041 Trifolium pratense HOM05D003476 ORTHO05D004057 1.4e-20 103.6 107 51.4
CANSAT56G1382 Cannabis sativa HOM05D003476 ORTHO05D004057 1.8e-20 103.2 107 50.5
Ca_05932_v3 Cicer arietinum L. HOM05D003476 ORTHO05D004057 1.8e-20 103.2 107 51.4
Ciclev10032786m.g Citrus clementina HOM05D003476 ORTHO05D004057 1.8e-20 103.2 107 52.3
Thhalv10028970m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 1.8e-20 103.2 106 50.9
Glyma.02G254500 Glycine max HOM05D003476 ORTHO05D004057 1.8e-20 103.2 107 52.3
Gohir.D10G243900 Gossypium hirsutum HOM05D003476 ORTHO05D004057 1.8e-20 103.2 107 52.3
EL10Ac2g04131 Beta vulgaris HOM05D003476 ORTHO05D004057 2.4e-20 102.8 107 48.6
ClCG07G004000 Citrullus lanatus HOM05D003476 ORTHO05D004057 2.4e-20 102.8 105 49.5
COL.COLO4_25658 Corchorus olitorius HOM05D003476 ORTHO05D004057 2.4e-20 102.8 175 38.3
Glyma.14G061900 Glycine max HOM05D003476 ORTHO05D004057 2.4e-20 102.8 107 53.3
HanXRQChr12g0370541 Helianthus annuus HOM05D003476 ORTHO05D004057 2.4e-20 102.8 106 50.0
Manes.07G125600 Manihot esculenta HOM05D003476 ORTHO05D004057 2.4e-20 102.8 107 48.6
HPP92_016193 Vanilla planifolia HOM05D003476 ORTHO05D004057 2.4e-20 102.8 105 48.6
MD15G1038100 Malus domestica HOM05D003476 ORTHO05D004057 3.1e-20 102.4 107 51.4
Nitab4.5_0000099g0220 Nicotiana tabacum HOM05D003476 ORTHO05D004057 3.1e-20 102.4 180 37.8
Phvul.008G226300 Phaseolus vulgaris HOM05D003476 ORTHO05D004057 3.1e-20 102.4 107 52.3
Migut.F01426 Erythranthe guttata HOM05D003476 ORTHO05D004057 4.0e-20 102.1 107 50.5
MBI16_g26377_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 4.0e-20 102.1 103 53.4
Nn5g27487 Nelumbo nucifera HOM05D003476 ORTHO05D004057 4.0e-20 102.1 105 49.5
Os04g0446300 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 4.0e-20 102.1 105 48.6
BraA03t11468Z Brassica rapa HOM05D003476 ORTHO05D004057 5.3e-20 101.7 101 51.5
Medtr5g081900 Medicago truncatula HOM05D003476 ORTHO05D004057 5.3e-20 101.7 109 48.6
Eucgr.G03033 Eucalyptus grandis HOM05D003476 ORTHO05D004057 6.9e-20 101.3 107 50.5
Prupe.1G392100 Prunus persica HOM05D003476 ORTHO05D004057 6.9e-20 101.3 107 50.5
ECA238G4332 Erigeron canadensis HOM05D003476 ORTHO05D004057 1.2e-19 100.5 108 50.9
LjContig00357g0022102 Lotus japonicus HOM05D003476 ORTHO05D004057 1.2e-19 100.5 107 51.4
CiPaw.01G295800 Carya illinoinensis HOM05D003476 ORTHO05D004057 1.5e-19 100.1 107 49.5
Duzib128G2055 Durio zibethinus HOM05D003476 ORTHO05D004057 1.5e-19 100.1 107 48.6
PGR142G4151 Punica granatum HOM05D003476 ORTHO05D004057 1.5e-19 100.1 108 47.2
Hma1.2p1_0710F.1_g207290 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 2.0e-19 99.8 107 47.7
Potri.010G192700 Populus trichocarpa HOM05D003476 ORTHO05D004057 2.0e-19 99.8 107 49.5
RcHm_v2.0_Chr6g0299621 Rosa chinensis HOM05D003476 ORTHO05D004057 2.0e-19 99.8 107 49.5
Sabra08G0047500 Salix brachista HOM05D003476 ORTHO05D004057 2.0e-19 99.8 94 55.3
ECA233G2895 Erigeron canadensis HOM05D003476 ORTHO05D004057 3.4e-19 99.0 142 44.4
MD08G1058200 Malus domestica HOM05D003476 ORTHO05D004057 3.4e-19 99.0 109 51.4
HanXRQChr08g0222271 Helianthus annuus HOM05D003476 ORTHO05D004057 4.4e-19 98.6 105 49.5
Rhsim13G0104300 Rhododendron simsii HOM05D003476 ORTHO05D004057 4.4e-19 98.6 136 42.6
Aqoxy4G02660 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 5.8e-19 98.2 107 49.5
Haze_17184 Corylus avellana HOM05D003476 ORTHO05D004057 1.7e-18 96.7 169 38.5
VMungo0647G2503 Vigna mungo HOM05D003476 ORTHO05D004057 1.7e-18 96.7 97 52.6
Duzib106G0197 Durio zibethinus HOM05D003476 ORTHO05D004057 3.8e-18 95.5 107 47.7
FAN27G3190 Fragaria x ananassa HOM05D003476 ORTHO05D004057 4.9e-18 95.1 107 46.7
arahy.Tifrunner.gnm1.ann1.7TWC5I Arachis hypogaea HOM05D003476 ORTHO05D004057 1.1e-17 94.0 97 50.5
BraA04t18491Z Brassica rapa HOM05D003476 ORTHO05D004057 1.4e-17 93.6 135 41.5
arahy.Tifrunner.gnm1.ann1.C86U5P Arachis hypogaea HOM05D003476 ORTHO05D004057 1.9e-17 93.2 97 50.5
FvH4_2g40940 Fragaria vesca HOM05D003476 ORTHO05D004057 2.4e-17 92.8 165 36.4
LjContig00357g0025168 Lotus japonicus HOM05D003476 ORTHO05D004057 1.2e-16 90.5 105 48.6
MD07G1214300 Malus domestica HOM05D003476 ORTHO05D004057 1.2e-16 90.5 107 46.7
AUR62012465 Chenopodium quinoa HOM05D003476 ORTHO05D004057 1.6e-16 90.1 137 43.1
SalBow6G0036 Salvia bowleyana HOM05D003476 ORTHO05D004057 1.6e-16 90.1 79 62.0
Ah.16g104950 Amaranthus hybridus HOM05D003476 ORTHO05D004057 6.0e-16 88.2 149 39.6
SGA_v2.0_scaffold76G25080 Striga asiatica HOM05D003476 ORTHO05D004057 1.0e-15 87.4 106 42.5
MBI14_g13584_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 3.0e-15 85.9 86 55.8
MBI14_g25462_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 3.0e-15 85.9 199 34.2
vmacro06994 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 3.9e-15 85.5 79 57.0
Aa31LG9G9900 Aethionema arabicum HOM05D002056 ORTHO05D002289 5.1e-15 85.1 108 46.3
FAN03G0251 Fragaria x ananassa HOM05D003476 ORTHO05D004057 8.7e-15 84.3 79 58.2
Peaxi162Scf00360g00616 Petunia axillaris HOM05D003476 ORTHO05D004057 8.7e-15 84.3 93 51.6
unitig_747.g21420 Utricularia gibba HOM05D003476 ORTHO05D004057 8.7e-15 84.3 79 54.4
MBI14_g36886_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 1.9e-14 83.2 160 38.1
MELO3C025156.2 Cucumis melo HOM05D003476 ORTHO05D004057 4.3e-14 82.0 75 56.0
Lj1A950T60 Lonicera japonica HOM05D003476 ORTHO05D004057 5.6e-14 81.6 79 53.2
MBI16_g37731_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 1.6e-13 80.1 83 51.8
Cfa001366 Carpinus fangiana HOM05D003476 ORTHO05D004057 1.7e-10 70.1 72 52.8
ATR0618G195 Amborella trichopoda HOM05D003476 ORTHO05D004057 8.4e-10 67.8 67 50.7
Solyc04g072110.4 Solanum lycopersicum HOM05D003476 ORTHO05D004057 1.1e-09 67.4 60 55.0
Oeu036632.1 Olea europaea HOM05D003476 ORTHO05D004057 1.9e-09 66.6 60 55.0
CDE03G0334 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 2.4e-09 66.2 132 34.8
Prupe.2G246200 Prunus persica HOM05D003476 ORTHO05D004057 6.0e-08 61.6 60 53.3
MBI08_g04934_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 3.3e-06 55.8 67 46.3
TAR636G3666 Trochodendron aralioides HOM05D003476 ORTHO05D004057 4.3e-06 55.5 56 48.2


User provided reference genes

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