Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 1.5e-251 872.5 468 100.0
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 3.1e-47 193.7 146 60.3
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 4.0e-47 193.4 150 60.0
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 9.0e-47 192.2 150 59.3
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 9.0e-47 192.2 139 62.6
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 1.5e-46 191.4 138 63.0
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 5.8e-46 189.5 139 63.3
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 5.8e-46 189.5 139 63.3
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 5.8e-46 189.5 137 62.8
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 5.8e-46 189.5 149 60.4
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 5.8e-46 189.5 149 61.1
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 7.6e-46 189.1 140 62.9
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 9.9e-46 188.7 138 62.3
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 9.9e-46 188.7 152 58.6
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.3e-45 188.3 149 61.1
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 1.3e-45 188.3 138 61.6
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 2.2e-45 187.6 139 64.0
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 2.2e-45 187.6 139 63.3
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 2.2e-45 187.6 138 60.1
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 2.9e-45 187.2 139 61.2
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 2.9e-45 187.2 139 61.2
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 2.9e-45 187.2 137 62.0
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 2.9e-45 187.2 139 62.6
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 3.8e-45 186.8 139 61.9
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 6.4e-45 186.0 139 62.6
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 6.4e-45 186.0 138 60.9
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 6.4e-45 186.0 139 63.3
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 6.4e-45 186.0 137 60.6
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 6.4e-45 186.0 149 59.7
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 8.4e-45 185.7 139 61.9
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 8.4e-45 185.7 139 63.3
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 1.1e-44 185.3 139 61.2
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 1.1e-44 185.3 152 57.2
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 1.4e-44 184.9 139 62.6
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 1.4e-44 184.9 139 61.9
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 1.9e-44 184.5 137 61.3
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 1.9e-44 184.5 139 62.6
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 2.4e-44 184.1 146 59.6
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 2.4e-44 184.1 138 58.7
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 3.2e-44 183.7 139 61.2
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 3.2e-44 183.7 139 62.6
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 3.2e-44 183.7 149 57.7
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 3.2e-44 183.7 140 60.0
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 3.2e-44 183.7 139 61.2
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 4.2e-44 183.3 137 63.5
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 5.5e-44 183.0 140 60.7
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 5.5e-44 183.0 139 61.2
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 5.5e-44 183.0 139 59.7
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 5.5e-44 183.0 139 61.9
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 7.1e-44 182.6 139 61.2
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 7.1e-44 182.6 139 61.2
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 7.1e-44 182.6 139 59.7
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 9.3e-44 182.2 137 62.8
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 9.3e-44 182.2 140 60.0
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 9.3e-44 182.2 139 62.6
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.2e-43 181.8 138 59.4
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 1.6e-43 181.4 137 60.6
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 1.6e-43 181.4 139 63.3
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 1.6e-43 181.4 139 60.4
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 2.1e-43 181.0 146 61.6
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 2.1e-43 181.0 139 60.4
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 2.1e-43 181.0 139 60.4
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 2.1e-43 181.0 139 61.9
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 2.7e-43 180.6 132 63.6
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 2.7e-43 180.6 132 62.9
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 3.5e-43 180.3 139 61.9
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 3.5e-43 180.3 139 61.9
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 3.5e-43 180.3 139 61.9
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 4.6e-43 179.9 139 62.6
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 4.6e-43 179.9 139 62.6
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 7.9e-43 179.1 136 61.0
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 7.9e-43 179.1 137 59.1
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 1.0e-42 178.7 139 61.2
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 1.0e-42 178.7 136 60.3
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 1.8e-42 177.9 139 61.9
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 3.0e-42 177.2 153 56.9
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.0e-42 177.2 153 56.9
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 3.9e-42 176.8 139 61.9
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 3.9e-42 176.8 133 57.9
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 5.1e-42 176.4 144 58.3
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 5.1e-42 176.4 142 60.6
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 6.7e-42 176.0 139 61.2
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 1.1e-41 175.3 137 59.1
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 2.5e-41 174.1 136 59.6
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 9.6e-41 172.2 160 53.8
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 2.4e-39 167.5 144 52.8
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 3.4e-38 163.7 139 58.3
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.7e-37 161.4 135 54.8
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 2.2e-37 161.0 121 62.0
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 1.4e-36 158.3 118 62.7
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 4.2e-36 156.8 143 55.9
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 4.2e-36 156.8 123 59.3
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 5.5e-36 156.4 139 56.8
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 9.3e-36 155.6 121 60.3
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 1.6e-35 154.8 121 58.7
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 2.7e-35 154.1 146 52.7
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 3.5e-35 153.7 113 62.8
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 7.9e-35 152.5 140 51.4
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 5.7e-33 146.4 116 60.3
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 2.1e-32 144.4 138 50.7
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 2.8e-32 144.1 106 65.1
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 4.8e-32 143.3 136 52.2
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 6.3e-32 142.9 136 52.9
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 6.3e-32 142.9 136 52.9
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 1.1e-31 142.1 109 58.7
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 4.1e-31 140.2 110 58.2
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 4.5e-30 136.7 107 56.1
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 4.5e-30 136.7 140 46.4
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 7.6e-30 136.0 105 61.0
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 1.0e-29 135.6 106 63.2
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 1.3e-29 135.2 134 48.5
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 6.5e-29 132.9 105 63.8
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 8.4e-29 132.5 99 58.6
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 8.4e-29 132.5 143 46.9
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 1.4e-28 131.7 115 52.2
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 1.9e-28 131.3 99 58.6
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 3.2e-28 130.6 103 56.3
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 4.2e-28 130.2 139 48.2
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 6.1e-27 126.3 152 42.8
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 6.1e-27 126.3 119 49.6
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 6.1e-27 126.3 119 49.6
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 1.3e-26 125.2 100 58.0
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 1.4e-23 115.2 141 43.3
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 3.4e-22 110.5 110 55.5
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 3.6e-19 100.5 77 59.7
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 5.7e-17 93.2 66 65.2
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 5.7e-17 93.2 66 65.2
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 5.7e-17 93.2 80 60.0
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 1.3e-16 92.0 73 53.4
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 3.7e-16 90.5 66 63.6
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 4.8e-16 90.1 67 62.7
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 6.9e-15 86.3 81 51.9
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 1.3e-13 82.0 73 46.6
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 1.7e-13 81.6 65 53.8
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 1.1e-12 79.0 63 49.2
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 1.9e-12 78.2 65 52.3
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.9e-12 78.2 90 46.7
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 4.2e-12 77.0 56 62.5
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 2.3e-10 71.2 79 49.4
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 3.7e-08 63.9 58 48.3
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 2.4e-07 61.2 78 38.5


User provided reference genes

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