Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g4823 Chara braunii HOM05D024416 ORTHO05D019658 7.3e-275 949.9 464 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1559 Anthoceros agrestis HOM05D002042 ORTHO05D019658 4.5e-115 419.1 452 46.7
Pp3c3_24780 Physcomitrium patens HOM05D024416 ORTHO05D019658 1.4e-113 414.1 452 46.9
Mapoly0007s0214 Marchantia polymorpha HOM05D002042 ORTHO05D019658 1.1e-110 404.4 453 46.1
Pp3c12_18890 Physcomitrium patens HOM05D000796 ORTHO05D000674 4.5e-83 312.8 330 47.3
SMO197G0057 Selaginella moellendorffii HOM05D024416 ORTHO05D019658 7.7e-83 312.0 355 44.8
MCO13G318 Micromonas commoda HOM05D024416 ORTHO05D019658 1.8e-71 274.2 455 34.5
SMO005G0026 Selaginella moellendorffii HOM05D024416 ORTHO05D019658 3.3e-41 173.7 135 60.0
CDE09G1013 Ceratophyllum demersum HOM05D001692 ORTHO05D005276 3.4e-14 84.0 182 29.1
Haze_27488 Corylus avellana HOM05D001692 ORTHO05D005276 9.9e-14 82.4 216 29.2
Cfa025793 Carpinus fangiana HOM05D002042 ORTHO05D008431 1.4e-12 78.6 195 28.7
ATR0743G260 Amborella trichopoda HOM05D002042 ORTHO05D003928 2.4e-12 77.8 192 29.7
Pp3c8_15440 Physcomitrium patens HOM05D002042 ORTHO05D008431 3.2e-12 77.4 221 28.5
SEGI_02719 Sequoiadendron giganteum HOM05D001692 ORTHO05D005276 3.2e-12 77.4 168 28.0
SMO367G1031 Selaginella moellendorffii HOM05D002042 ORTHO05D003928 1.2e-11 75.5 195 28.7
AUR62019708 Chenopodium quinoa HOM05D001692 ORTHO05D005276 6.0e-11 73.2 181 26.0
unitig_92.g28203 Utricularia gibba HOM05D002042 ORTHO05D003928 6.0e-11 73.2 209 26.3
CSS0009301 Camellia sinensis var. sinensis HOM05D002042 ORTHO05D003928 1.0e-10 72.4 206 24.8
ATR1127G175 Amborella trichopoda HOM05D002042 ORTHO05D008431 1.8e-10 71.6 194 29.4
Peaxi162Scf00304g00832 Petunia axillaris HOM05D002042 ORTHO05D008431 1.8e-10 71.6 193 31.1
Sopen12g006780 Solanum pennellii HOM05D001692 ORTHO05D005276 1.8e-10 71.6 181 27.6
Pp3c3_9810 Physcomitrium patens HOM05D002042 ORTHO05D003928 2.3e-10 71.2 215 27.9
Solyc12g011430.3 Solanum lycopersicum HOM05D001692 ORTHO05D005276 2.3e-10 71.2 181 27.6
CDE08G1381 Ceratophyllum demersum HOM05D002042 ORTHO05D003928 5.1e-10 70.1 192 26.0
arahy.Tifrunner.gnm1.ann1.GWX7Z5 Arachis hypogaea HOM05D002042 ORTHO05D003928 1.5e-09 68.6 209 24.4
arahy.Tifrunner.gnm1.ann1.J488YR Arachis hypogaea HOM05D002042 ORTHO05D003928 1.5e-09 68.6 209 24.4
MSTRG.4285 Avicennia marina HOM05D002042 ORTHO05D003928 1.9e-09 68.2 206 26.7
Cc03_g12120 Coffea canephora HOM05D002042 ORTHO05D003928 1.9e-09 68.2 211 26.1
Migut.G01317 Erythranthe guttata HOM05D002042 ORTHO05D003928 1.9e-09 68.2 209 26.8
Mapoly0204s0009 Marchantia polymorpha HOM05D002042 ORTHO05D003928 1.9e-09 68.2 203 28.6
Cpa.g.sc9.318 Carica papaya HOM05D002042 ORTHO05D003928 2.5e-09 67.8 206 26.7
Glyma.02G004400 Glycine max HOM05D006451 ORTHO05D007680 3.3e-09 67.4 100 41.0
Medtr5g068440 Medicago truncatula HOM05D002042 ORTHO05D008431 3.3e-09 67.4 217 24.9
Nitab4.5_0001586g0150 Nicotiana tabacum HOM05D002042 ORTHO05D003928 3.3e-09 67.4 209 25.4
Nitab4.5_0006064g0030 Nicotiana tabacum HOM05D002042 ORTHO05D003928 3.3e-09 67.4 209 25.4
CAN.G540.7 Capsicum annuum HOM05D002042 ORTHO05D003928 5.6e-09 66.6 209 25.4
CBR_g51006 Chara braunii HOM05D002042 ORTHO05D003928 5.6e-09 66.6 202 26.2
PRCOL_00002472 Prasinoderma coloniale HOM05D005079 ORTHO05D006362 5.6e-09 66.6 102 39.2
Actinidia11293 Actinidia chinensis HOM05D002042 ORTHO05D003928 7.4e-09 66.2 192 26.6
Psat6g104120 Pisum sativum HOM05D006451 ORTHO05D007680 7.4e-09 66.2 98 42.9
GSVIVG01010845001 Vitis vinifera HOM05D002042 ORTHO05D003928 7.4e-09 66.2 192 26.0
PRCOL_00005325 Prasinoderma coloniale HOM05D006451 ORTHO05D007680 9.6e-09 65.9 166 33.7
C08p51400 Brassica napus HOM05D002042 ORTHO05D003928 1.3e-08 65.5 195 25.6
BolC8t52666H Brassica oleracea HOM05D002042 ORTHO05D003928 1.3e-08 65.5 195 25.6
Glyma.10G003800 Glycine max HOM05D006451 ORTHO05D007680 1.3e-08 65.5 100 40.0
Lj6g0024617 Lotus japonicus HOM05D006451 ORTHO05D007680 1.3e-08 65.5 100 40.0
Lalb_Chr01g0020941 Lupinus albus HOM05D006451 ORTHO05D007680 1.3e-08 65.5 100 40.0
Os03g0679800 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.3e-08 65.5 105 39.0
Peaxi162Scf00180g00311 Petunia axillaris HOM05D002042 ORTHO05D003928 1.3e-08 65.5 209 23.9
Phvul.007G277400 Phaseolus vulgaris HOM05D006451 ORTHO05D007680 1.3e-08 65.5 100 40.0
Prupe.1G198300 Prunus persica HOM05D002042 ORTHO05D003928 1.3e-08 65.5 192 26.0
RcHm_v2.0_Chr5g0074861 Rosa chinensis HOM05D002042 ORTHO05D003928 1.3e-08 65.5 194 27.3
TPR.G33926 Trifolium pratense HOM05D002042 ORTHO05D008431 1.3e-08 65.5 216 25.5
VMungo0720G2899 Vigna mungo HOM05D006451 ORTHO05D007680 1.3e-08 65.5 100 40.0
Zm00001eb186100 Zea mays HOM05D002462 ORTHO05D002893 1.3e-08 65.5 102 38.2
AagrBONN_evm.TU.Sc2ySwM_344.1644 Anthoceros agrestis HOM05D002042 ORTHO05D003928 1.6e-08 65.1 209 26.3
Ca_12151_v3 Cicer arietinum L. HOM05D006451 ORTHO05D007680 1.6e-08 65.1 98 41.8
Mapoly0204s0005 Marchantia polymorpha HOM05D002042 ORTHO05D003928 1.6e-08 65.1 218 25.7
Medtr1g041435 Medicago truncatula HOM05D006451 ORTHO05D007680 2.1e-08 64.7 98 41.8
Os03g0680566 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 2.1e-08 64.7 105 35.2
Hund03177 Selenicereus undatus HOM05D002042 ORTHO05D003928 2.1e-08 64.7 203 23.6
Cpa.g.sc50.66 Carica papaya HOM05D000115 ORTHO05D005317 2.8e-08 64.3 138 29.7
FvH4_3g41770 Fragaria vesca HOM05D002042 ORTHO05D003928 2.8e-08 64.3 194 26.8
Os12g0604800 Oryza sativa ssp. japonica HOM05D006451 ORTHO05D007680 2.8e-08 64.3 99 40.4
SEGI_22633 Sequoiadendron giganteum HOM05D002042 ORTHO05D003928 2.8e-08 64.3 192 26.6
Zm00001eb031280 Zea mays HOM05D006451 ORTHO05D007680 2.8e-08 64.3 99 39.4
TPR.G25159 Trifolium pratense HOM05D006451 ORTHO05D007680 3.7e-08 63.9 98 40.8
FAN21G1842 Fragaria x ananassa HOM05D002042 ORTHO05D003928 4.8e-08 63.5 194 26.8
Os03g0332400 Oryza sativa ssp. japonica HOM05D002042 ORTHO05D008431 4.8e-08 63.5 193 25.4
EL10Ac3g06013 Beta vulgaris HOM05D002042 ORTHO05D003928 6.2e-08 63.2 195 25.6
FAN25G1970 Fragaria x ananassa HOM05D002042 ORTHO05D003928 6.2e-08 63.2 194 26.8
Os03g0680300 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 6.2e-08 63.2 105 35.2
Dinv12712 Davidia involucrata HOM05D000115 ORTHO05D005317 8.2e-08 62.8 142 26.8
Solyc06g053310.3 Solanum lycopersicum HOM05D002042 ORTHO05D003928 8.2e-08 62.8 209 25.4
Sopen06g018370 Solanum pennellii HOM05D002042 ORTHO05D003928 8.2e-08 62.8 209 25.4
SGA_v2.0_scaffold17G08161 Striga asiatica HOM05D002042 ORTHO05D003928 8.2e-08 62.8 195 25.1
HPP92_021772 Vanilla planifolia HOM05D000115 ORTHO05D005317 8.2e-08 62.8 142 28.2
AUR62041331 Chenopodium quinoa HOM05D000115 ORTHO05D005317 1.1e-07 62.4 142 28.2
Cre03.g189950 Chlamydomonas reinhardtii HOM05D002462 ORTHO05D002893 1.1e-07 62.4 101 38.6
MD13G1198100 Malus domestica HOM05D006451 ORTHO05D007680 1.1e-07 62.4 101 37.6
Manes.11G125200 Manihot esculenta HOM05D002042 ORTHO05D003928 1.1e-07 62.4 195 26.2
PRCOL_00006080 Prasinoderma coloniale HOM05D002042 ORTHO05D003928 1.1e-07 62.4 200 26.5
Aqoxy2G03443 Aquilegia oxysepala HOM05D006451 ORTHO05D007680 1.8e-07 61.6 101 38.6
AUR62024011 Chenopodium quinoa HOM05D000115 ORTHO05D005317 1.8e-07 61.6 138 29.0
FAN17G1940 Fragaria x ananassa HOM05D006451 ORTHO05D007680 1.8e-07 61.6 102 38.2
FAN22G0671 Fragaria x ananassa HOM05D006451 ORTHO05D007680 1.8e-07 61.6 102 38.2
HanXRQChr17g0541261 Helianthus annuus HOM05D000115 ORTHO05D005317 1.8e-07 61.6 138 28.3
Medtr3g452710 Medicago truncatula HOM05D000115 ORTHO05D005317 1.8e-07 61.6 144 29.9
SEGI_20856 Sequoiadendron giganteum HOM05D000115 ORTHO05D005317 1.8e-07 61.6 146 26.7
Zm00001eb248730 Zea mays HOM05D002462 ORTHO05D002893 1.8e-07 61.6 102 38.2
Os02g0644100 Oryza sativa ssp. japonica HOM05D002462 ORTHO05D002893 2.4e-07 61.2 102 37.3
Cc03_g04170 Coffea canephora HOM05D006451 ORTHO05D007680 3.1e-07 60.8 129 34.1
Haze_11218 Corylus avellana HOM05D006451 ORTHO05D007680 3.1e-07 60.8 100 39.0
PRCOL_00003744 Prasinoderma coloniale HOM05D007806 ORTHO05D009818 3.1e-07 60.8 102 35.3
A05p03220 Brassica napus HOM05D000115 ORTHO05D005317 4.0e-07 60.5 142 28.2
BraA05t19312Z Brassica rapa HOM05D000115 ORTHO05D005317 4.0e-07 60.5 142 28.2
Cpa.g.sc36.120 Carica papaya HOM05D000868 ORTHO05D000711 4.0e-07 60.5 102 38.2
CBR_g18988 Chara braunii HOM05D006451 ORTHO05D007680 4.0e-07 60.5 100 40.0
FvH4_4g00880 Fragaria vesca HOM05D006451 ORTHO05D007680 4.0e-07 60.5 102 37.3
FAN12G3362 Fragaria x ananassa HOM05D006451 ORTHO05D007680 4.0e-07 60.5 102 37.3
PRCOL_00006159 Prasinoderma coloniale HOM05D006451 ORTHO05D007680 4.0e-07 60.5 122 32.0
Prupe.1G019800 Prunus persica HOM05D006451 ORTHO05D007680 4.0e-07 60.5 102 37.3
Zm00001eb283980 Zea mays HOM05D000115 ORTHO05D005317 4.0e-07 60.5 146 26.0
C04p03870 Brassica napus HOM05D000115 ORTHO05D005317 5.3e-07 60.1 142 28.2
BolC4t22023H Brassica oleracea HOM05D000115 ORTHO05D005317 5.3e-07 60.1 142 28.2
Os05g0204900 Oryza sativa ssp. japonica HOM05D000115 ORTHO05D005317 5.3e-07 60.1 138 27.5
TAR626G1968 Trochodendron aralioides HOM05D000115 ORTHO05D005317 5.3e-07 60.1 142 26.8
Nitab4.5_0000085g0050 Nicotiana tabacum HOM05D006451 ORTHO05D007680 6.9e-07 59.7 148 32.4
Pp3c7_11180 Physcomitrium patens HOM05D000115 ORTHO05D005317 6.9e-07 59.7 149 26.2
PRCOL_00003859 Prasinoderma coloniale HOM05D015981 ORTHO05D034542 6.9e-07 59.7 99 38.4
QL06p001354 Quercus lobata HOM05D006451 ORTHO05D007680 9.0e-07 59.3 100 37.0
EL10Ac3g06461 Beta vulgaris HOM05D006451 ORTHO05D007680 1.2e-06 58.9 104 38.5
Cpa.g.sc29.105 Carica papaya HOM05D002462 ORTHO05D002893 1.2e-06 58.9 123 31.7
CDE06G1396 Ceratophyllum demersum HOM05D000115 ORTHO05D005317 1.2e-06 58.9 146 26.7
Nitab4.5_0003249g0030 Nicotiana tabacum HOM05D006451 ORTHO05D007680 1.2e-06 58.9 135 33.3
RcHm_v2.0_Chr4g0387501 Rosa chinensis HOM05D006451 ORTHO05D007680 1.2e-06 58.9 101 36.6
Ah.07g204140 Amaranthus hybridus HOM05D006451 ORTHO05D007680 1.5e-06 58.5 100 38.0
Oeu058962.1 Olea europaea HOM05D006451 ORTHO05D007680 1.5e-06 58.5 104 37.5
CAN.G1402.12 Capsicum annuum HOM05D006451 ORTHO05D007680 2.0e-06 58.2 97 38.1
CiPaw.01G196900 Carya illinoinensis HOM05D006451 ORTHO05D007680 2.0e-06 58.2 100 36.0
Migut.G00375 Erythranthe guttata HOM05D006451 ORTHO05D007680 2.0e-06 58.2 100 38.0
MCO05G324 Micromonas commoda HOM05D001789 ORTHO05D268785 2.0e-06 58.2 119 31.9
Os03g0680400 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 2.0e-06 58.2 105 34.3
Sc25g0004270 Simmondsia chinensis HOM05D006451 ORTHO05D007680 2.0e-06 58.2 99 38.4
Aa31LG5G15100 Aethionema arabicum HOM05D001789 ORTHO05D001755 2.6e-06 57.8 99 36.4
CiPaw.03G188000 Carya illinoinensis HOM05D000115 ORTHO05D005317 2.6e-06 57.8 142 25.4
CsaV3_6G037960 Cucumis sativus L. HOM05D000115 ORTHO05D005317 2.6e-06 57.8 138 28.3
MD16G1198200 Malus domestica HOM05D006451 ORTHO05D007680 2.6e-06 57.8 101 34.7
Sabra08G0119100 Salix brachista HOM05D006451 ORTHO05D007680 2.6e-06 57.8 100 36.0
Zm00001eb031110 Zea mays HOM05D001789 ORTHO05D001755 2.6e-06 57.8 104 33.7
MSTRG.4055 Avicennia marina HOM05D006451 ORTHO05D007680 3.4e-06 57.4 100 37.0
MELO3C014459.2 Cucumis melo HOM05D000115 ORTHO05D005317 3.4e-06 57.4 138 28.3
Gohir.D01G021900 Gossypium hirsutum HOM05D006451 ORTHO05D007680 3.4e-06 57.4 100 37.0
Gorai.002G024400 Gossypium raimondii HOM05D006451 ORTHO05D007680 3.4e-06 57.4 100 37.0
Manes.08G136000 Manihot esculenta HOM05D001789 ORTHO05D001755 3.4e-06 57.4 99 34.3
Potri.008G156500 Populus trichocarpa HOM05D006451 ORTHO05D007680 3.4e-06 57.4 100 36.0
TAR362G1293 Trochodendron aralioides HOM05D006451 ORTHO05D007680 3.4e-06 57.4 100 37.0
Zm00001eb034120 Zea mays HOM05D001789 ORTHO05D001755 3.4e-06 57.4 95 35.8
Gohir.A01G023900 Gossypium hirsutum HOM05D006451 ORTHO05D007680 4.5e-06 57.0 100 37.0
MBI05_g32451_MAGBIO Magnolia biondii HOM05D000868 ORTHO05D000711 4.5e-06 57.0 149 30.2
Manes.15G032000 Manihot esculenta HOM05D006451 ORTHO05D007680 4.5e-06 57.0 103 35.0
Manes.18G068500 Manihot esculenta HOM05D000868 ORTHO05D000711 4.5e-06 57.0 154 31.2
PRCOL_00006826 Prasinoderma coloniale HOM05D002462 ORTHO05D002893 4.5e-06 57.0 100 33.0
PGSC0003DMG402007686 Solanum tuberosum HOM05D006451 ORTHO05D007680 4.5e-06 57.0 98 36.7
Lj3g0013678 Lotus japonicus HOM05D002042 ORTHO05D003928 5.8e-06 56.6 203 24.6
PSO384G1410 Papaver somniferum HOM05D001789 ORTHO05D001755 5.8e-06 56.6 99 33.3
Potri.005G054800 Populus trichocarpa HOM05D001789 ORTHO05D001755 5.8e-06 56.6 99 32.3
SGA_v2.0_scaffold191G40453 Striga asiatica HOM05D006451 ORTHO05D007680 5.8e-06 56.6 100 37.0
AUR62034703 Chenopodium quinoa HOM05D006451 ORTHO05D007680 7.6e-06 56.2 100 36.0
AUR62043956 Chenopodium quinoa HOM05D006451 ORTHO05D007680 7.6e-06 56.2 100 36.0
Lj1g0007033 Lotus japonicus HOM05D001789 ORTHO05D001755 7.6e-06 56.2 99 34.3
Oeu013826.2 Olea europaea HOM05D000115 ORTHO05D005317 7.6e-06 56.2 145 27.6
Oeu032120.1 Olea europaea HOM05D000115 ORTHO05D005317 7.6e-06 56.2 139 28.8
PSO339G5673 Papaver somniferum HOM05D001789 ORTHO05D001755 7.6e-06 56.2 99 33.3
Sed0025939 Sechium edule HOM05D000115 ORTHO05D005317 7.6e-06 56.2 154 27.3
Solyc09g082540.3 Solanum lycopersicum HOM05D006451 ORTHO05D007680 7.6e-06 56.2 98 36.7
Sopen09g031400 Solanum pennellii HOM05D006451 ORTHO05D007680 7.6e-06 56.2 98 36.7
Cfa006403 Carpinus fangiana HOM05D001789 ORTHO05D001755 1.0e-05 55.8 89 39.3
Cfa025863 Carpinus fangiana HOM05D002462 ORTHO05D002893 1.0e-05 55.8 100 37.0
Ciclev10005444m.g Citrus clementina HOM05D006451 ORTHO05D007680 1.0e-05 55.8 103 35.9
Glyma.19G245700 Glycine max HOM05D001789 ORTHO05D001755 1.0e-05 55.8 99 36.4
Os12g0599900 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.0e-05 55.8 104 35.6
Peaxi162Scf00520g00039 Petunia axillaris HOM05D006451 ORTHO05D007680 1.0e-05 55.8 136 31.6


User provided reference genes

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