Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 1.3e-243 845.9 422 100.0
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 2.1e-119 433.3 309 62.5
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 4.7e-119 432.2 320 59.7
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 7.4e-117 424.9 322 59.0
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 1.3e-116 424.1 317 59.6
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 4.1e-115 419.1 309 59.2
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 4.1e-115 419.1 321 58.9
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 4.1e-115 419.1 321 58.9
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 9.1e-115 417.9 331 59.5
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 1.2e-114 417.5 319 58.0
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 3.4e-114 416.0 321 58.6
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 5.9e-114 415.2 308 60.4
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 5.9e-114 415.2 319 58.3
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 7.7e-114 414.8 325 57.5
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.0e-113 414.5 321 58.3
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 1.7e-113 413.7 322 57.5
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 2.2e-113 413.3 321 58.3
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 5.0e-113 412.1 321 58.6
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 8.5e-113 411.4 325 55.7
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 1.4e-112 410.6 322 57.5
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.9e-112 410.2 307 58.3
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 1.9e-112 410.2 308 58.8
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 3.2e-112 409.5 346 55.2
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 3.2e-112 409.5 315 56.8
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 4.2e-112 409.1 325 55.1
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 4.2e-112 409.1 321 58.3
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 4.2e-112 409.1 308 58.1
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 7.2e-112 408.3 308 57.1
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 7.2e-112 408.3 317 55.5
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 9.4e-112 407.9 308 57.5
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 1.2e-111 407.5 308 58.8
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 1.2e-111 407.5 311 57.9
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 1.6e-111 407.1 308 59.1
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 1.6e-111 407.1 308 59.4
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 2.1e-111 406.8 316 58.2
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 4.7e-111 405.6 319 57.1
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 4.7e-111 405.6 308 59.1
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 6.1e-111 405.2 312 57.7
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 8.0e-111 404.8 318 56.9
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 1.0e-110 404.4 318 57.2
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 1.4e-110 404.1 308 59.4
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 1.4e-110 404.1 310 57.7
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 1.8e-110 403.7 315 58.1
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.3e-110 403.3 306 57.5
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 2.3e-110 403.3 308 58.8
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 2.3e-110 403.3 319 55.8
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 3.0e-110 402.9 318 56.0
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 3.9e-110 402.5 308 57.1
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 1.1e-109 401.0 308 56.8
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.5e-109 400.6 329 54.7
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 2.6e-109 399.8 308 57.5
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 2.6e-109 399.8 309 57.6
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 3.3e-109 399.4 308 57.5
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 3.3e-109 399.4 306 57.8
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 3.3e-109 399.4 307 57.0
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 3.3e-109 399.4 308 56.8
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 4.4e-109 399.1 307 58.3
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 4.4e-109 399.1 303 58.1
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 4.4e-109 399.1 307 57.7
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 9.7e-109 397.9 307 58.6
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 9.7e-109 397.9 307 58.6
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 1.3e-108 397.5 308 56.8
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 1.3e-108 397.5 320 54.7
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 2.2e-108 396.7 328 54.6
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 2.2e-108 396.7 302 57.6
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 3.7e-108 396.0 318 55.0
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 3.7e-108 396.0 318 55.3
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 4.8e-108 395.6 308 58.1
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 8.2e-108 394.8 308 57.8
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 8.2e-108 394.8 325 54.2
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 8.2e-108 394.8 318 54.4
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 1.4e-107 394.0 310 54.5
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 1.4e-107 394.0 315 55.6
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 1.4e-107 394.0 308 57.8
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 1.8e-107 393.7 308 56.8
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 2.4e-107 393.3 318 56.3
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 4.1e-107 392.5 308 56.8
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 5.3e-107 392.1 307 56.4
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 5.3e-107 392.1 308 56.5
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 7.0e-107 391.7 308 57.5
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 7.0e-107 391.7 310 56.1
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 7.0e-107 391.7 313 55.3
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 7.0e-107 391.7 318 54.1
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 7.0e-107 391.7 318 54.4
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 7.0e-107 391.7 314 56.1
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 9.1e-107 391.3 310 56.1
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 9.1e-107 391.3 309 56.3
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 1.2e-106 391.0 309 57.3
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 1.6e-106 390.6 304 56.9
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.6e-106 390.6 316 55.1
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 1.6e-106 390.6 310 55.8
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 2.0e-106 390.2 318 53.5
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 2.6e-106 389.8 308 56.8
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 3.5e-106 389.4 308 56.2
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 5.9e-106 388.7 308 56.2
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.3e-105 387.5 309 54.4
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 1.7e-105 387.1 309 55.3
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.7e-105 387.1 309 54.7
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 1.7e-105 387.1 310 53.5
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 5.0e-105 385.6 310 55.8
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 6.5e-105 385.2 318 55.3
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 8.5e-105 384.8 314 56.1
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 1.5e-104 384.0 342 52.6
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.9e-104 383.6 303 54.8
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 5.5e-104 382.1 304 55.6
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 5.5e-104 382.1 304 55.6
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 1.6e-103 380.6 304 55.6
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.7e-103 379.8 316 53.8
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 2.7e-103 379.8 304 54.9
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 3.6e-103 379.4 309 54.7
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 6.1e-103 378.6 313 53.4
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 6.1e-103 378.6 308 55.8
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 8.0e-103 378.3 304 55.3
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 1.4e-102 377.5 318 54.1
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 2.3e-102 376.7 304 54.9
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 2.3e-102 376.7 304 54.3
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 2.3e-102 376.7 304 53.9
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 3.0e-102 376.3 308 54.5
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 6.7e-102 375.2 316 54.1
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 1.2e-101 374.4 304 53.0
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 2.0e-101 373.6 318 51.6
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 3.3e-101 372.9 304 53.6
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 3.7e-100 369.4 303 53.5
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.4e-99 366.7 275 58.5
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 3.1e-99 366.3 275 58.2
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 1.6e-98 364.0 279 59.9
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 3.5e-98 362.8 297 54.5
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 4.5e-98 362.5 314 56.1
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 6.5e-97 358.6 305 53.4
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 1.9e-96 357.1 304 53.3
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 8.0e-95 351.7 305 51.8
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 1.2e-93 347.8 274 56.2
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 3.4e-93 346.3 318 49.1
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 1.8e-91 340.5 313 50.8
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 5.4e-91 339.0 286 53.8
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 1.6e-90 337.4 308 51.6
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 2.0e-82 310.5 309 49.2
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.0e-81 308.1 299 49.5
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 3.8e-81 306.2 327 45.9
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 3.8e-81 306.2 327 45.9
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 1.1e-75 288.1 218 56.9
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 2.5e-72 276.9 222 54.1
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 1.7e-60 237.7 258 45.7
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 6.0e-58 229.2 170 59.4
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.6e-53 213.8 308 37.3
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 4.0e-46 189.9 261 41.0
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 1.1e-40 171.8 303 35.6
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 4.3e-40 169.9 125 56.8
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 4.8e-39 166.4 304 33.2
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.0e-33 148.7 114 59.6
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 3.0e-33 147.1 124 55.6
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 2.1e-31 141.0 97 59.8
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 3.8e-28 130.2 340 27.1
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 2.5e-27 127.5 238 34.5
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 2.0e-13 81.3 58 60.3
Oeu057324.1 Olea europaea HOM05D000434 ORTHO05D005992 4.3e-08 63.5 100 37.0


User provided reference genes

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