Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48131 Chara braunii HOM05D005144 ORTHO05D006112 2.8e-176 622.1 368 100.0
Mapoly0024s0042 Marchantia polymorpha HOM05D005144 ORTHO05D006112 9.8e-81 304.7 192 68.2
AagrBONN_evm.TU.Sc2ySwM_362.2655 Anthoceros agrestis HOM05D005144 ORTHO05D006112 7.2e-76 288.5 195 65.6
SMO356G0181 Selaginella moellendorffii HOM05D005144 ORTHO05D006112 1.6e-75 287.3 190 66.3
Manes.02G008400 Manihot esculenta HOM05D005144 ORTHO05D006112 1.3e-69 267.7 205 57.6
Eucgr.E00882 Eucalyptus grandis HOM05D005144 ORTHO05D006112 1.7e-69 267.3 201 59.7
CSS0010562 Camellia sinensis var. sinensis HOM05D005144 ORTHO05D006112 2.3e-69 266.9 201 59.7
CSS0049427 Camellia sinensis var. sinensis HOM05D005144 ORTHO05D006112 2.3e-69 266.9 201 59.7
Dinv37515 Davidia involucrata HOM05D005144 ORTHO05D006112 2.3e-69 266.9 201 58.2
TAR375G0238 Trochodendron aralioides HOM05D005144 ORTHO05D006112 2.3e-69 266.9 201 59.2
Ciclev10021394m.g Citrus clementina HOM05D005144 ORTHO05D006112 5.0e-69 265.8 201 59.2
BcaB01g01559 Brassica carinata HOM05D005144 ORTHO05D006112 6.6e-69 265.4 191 61.8
MD06G1109700 Malus domestica HOM05D005144 ORTHO05D006112 6.6e-69 265.4 192 60.4
GSVIVG01019559001 Vitis vinifera HOM05D005144 ORTHO05D006112 6.6e-69 265.4 189 61.4
MBI07_g40676_MAGBIO Magnolia biondii HOM05D005144 ORTHO05D006112 8.6e-69 265.0 201 59.7
Thecc.03G300600 Theobroma cacao HOM05D005144 ORTHO05D006112 8.6e-69 265.0 201 59.7
Prupe.5G122700 Prunus persica HOM05D005144 ORTHO05D006112 1.9e-68 263.8 185 62.2
ClCG07G011500 Citrullus lanatus HOM05D005144 ORTHO05D006112 2.5e-68 263.5 201 58.7
CARHR255680 Cardamine hirsuta HOM05D005144 ORTHO05D006112 5.6e-68 262.3 191 60.2
Cfa011983 Carpinus fangiana HOM05D005144 ORTHO05D006112 5.6e-68 262.3 195 59.5
CiPaw.11G119100 Carya illinoinensis HOM05D005144 ORTHO05D006112 5.6e-68 262.3 189 61.4
Lj4g0014592 Lotus japonicus HOM05D005144 ORTHO05D006112 5.6e-68 262.3 185 63.2
Sp6g06570 Schrenkiella parvula HOM05D005144 ORTHO05D006112 5.6e-68 262.3 191 61.3
THA.LOC104815124 Tarenaya hassleriana HOM05D005144 ORTHO05D006112 5.6e-68 262.3 191 61.8
EL10Ac5g12937 Beta vulgaris HOM05D005144 ORTHO05D006112 7.3e-68 261.9 201 58.7
CsaV3_4G006720 Cucumis sativus L. HOM05D005144 ORTHO05D006112 7.3e-68 261.9 201 57.7
BcaC04g21088 Brassica carinata HOM05D005144 ORTHO05D006112 9.5e-68 261.5 191 61.3
C09p35830 Brassica napus HOM05D005144 ORTHO05D006112 9.5e-68 261.5 191 61.3
BolC9t56417H Brassica oleracea HOM05D005144 ORTHO05D006112 9.5e-68 261.5 191 61.3
Haze_09089 Corylus avellana HOM05D005144 ORTHO05D006112 9.5e-68 261.5 195 59.0
Thhalv10028928m.g Eutrema salsugineum HOM05D005144 ORTHO05D006112 9.5e-68 261.5 191 60.2
TWI15G0686 Tripterygium wilfordii HOM05D005144 ORTHO05D006112 9.5e-68 261.5 195 59.0
Duzib084G0361 Durio zibethinus HOM05D005144 ORTHO05D006112 1.2e-67 261.2 206 57.8
TAR374G1437 Trochodendron aralioides HOM05D005144 ORTHO05D006112 1.2e-67 261.2 201 57.2
arahy.Tifrunner.gnm1.ann1.11VL1S Arachis hypogaea HOM05D005144 ORTHO05D006112 1.6e-67 260.8 185 62.7
arahy.Tifrunner.gnm1.ann1.72DNA3 Arachis hypogaea HOM05D005144 ORTHO05D006112 1.6e-67 260.8 185 62.7
Actinidia04180 Actinidia chinensis HOM05D005144 ORTHO05D006112 2.1e-67 260.4 201 58.2
A09p28270 Brassica napus HOM05D005144 ORTHO05D006112 2.1e-67 260.4 191 60.7
Lalb_Chr09g0332261 Lupinus albus HOM05D005144 ORTHO05D006112 2.1e-67 260.4 185 62.2
Manes.01G052400 Manihot esculenta HOM05D005144 ORTHO05D006112 2.1e-67 260.4 195 57.9
AT4G10925 Arabidopsis thaliana HOM05D005144 ORTHO05D006112 2.8e-67 260.0 191 60.7
BraA09t38396Z Brassica rapa HOM05D005144 ORTHO05D006112 2.8e-67 260.0 191 60.7
Carub.0006s2967 Capsella rubella HOM05D005144 ORTHO05D006112 2.8e-67 260.0 191 60.2
Gorai.008G256000 Gossypium raimondii HOM05D005144 ORTHO05D006112 2.8e-67 260.0 202 59.9
VMungo0251G3542 Vigna mungo HOM05D005144 ORTHO05D006112 2.8e-67 260.0 185 62.2
Gohir.A12G237800 Gossypium hirsutum HOM05D005144 ORTHO05D006112 3.6e-67 259.6 202 59.9
Gohir.D12G238900 Gossypium hirsutum HOM05D005144 ORTHO05D006112 3.6e-67 259.6 202 59.9
Phvul.002G299800 Phaseolus vulgaris HOM05D005144 ORTHO05D006112 3.6e-67 259.6 185 62.2
QL02p030059 Quercus lobata HOM05D005144 ORTHO05D006112 3.6e-67 259.6 195 59.0
Sed0013108 Sechium edule HOM05D005144 ORTHO05D006112 3.6e-67 259.6 191 58.6
AL6G45020 Arabidopsis lyrata HOM05D005144 ORTHO05D006112 4.7e-67 259.2 191 60.2
CiPaw.12G081400 Carya illinoinensis HOM05D005144 ORTHO05D006112 4.7e-67 259.2 195 59.5
Lsat_1_v5_gn_3_11240 Lactuca sativa HOM05D005144 ORTHO05D006112 4.7e-67 259.2 193 61.1
MELO3C016277.2 Cucumis melo HOM05D005144 ORTHO05D006112 8.0e-67 258.5 195 58.5
Duzib068G1441 Durio zibethinus HOM05D005144 ORTHO05D006112 8.0e-67 258.5 195 59.0
TWI60G1459 Tripterygium wilfordii HOM05D005144 ORTHO05D006112 8.0e-67 258.5 198 57.6
Atru.chr9.1926 Acer truncatum HOM05D005144 ORTHO05D006112 1.4e-66 257.7 215 54.9
Ca_17470_v3 Cicer arietinum L. HOM05D005144 ORTHO05D006112 1.8e-66 257.3 185 61.6
Gohir.D09G184500 Gossypium hirsutum HOM05D005144 ORTHO05D006112 3.1e-66 256.5 195 60.5
CANSAT21G0803 Cannabis sativa HOM05D005144 ORTHO05D006112 4.0e-66 256.1 185 61.6
Gorai.006G207000 Gossypium raimondii HOM05D005144 ORTHO05D006112 4.0e-66 256.1 195 60.5
Psat7g024160 Pisum sativum HOM05D005144 ORTHO05D006112 4.0e-66 256.1 185 61.6
PGR042G3213 Punica granatum HOM05D005144 ORTHO05D006112 4.0e-66 256.1 185 63.2
Cpa.g.sc634.1 Carica papaya HOM05D005144 ORTHO05D006112 5.2e-66 255.8 187 62.0
CDE10G0687 Ceratophyllum demersum HOM05D005144 ORTHO05D006112 6.8e-66 255.4 196 59.7
Medtr8g099610 Medicago truncatula HOM05D005144 ORTHO05D006112 6.8e-66 255.4 185 60.5
Gohir.A09G189800 Gossypium hirsutum HOM05D005144 ORTHO05D006112 8.9e-66 255.0 201 58.7
HanXRQChr17g0534951 Helianthus annuus HOM05D005144 ORTHO05D006112 8.9e-66 255.0 192 60.4
MD14G1130800 Malus domestica HOM05D005144 ORTHO05D006112 8.9e-66 255.0 192 58.9
Aa31LG9G11190 Aethionema arabicum HOM05D005144 ORTHO05D006112 1.2e-65 254.6 191 58.6
Potri.001G089600 Populus trichocarpa HOM05D005144 ORTHO05D006112 1.2e-65 254.6 204 56.9
RcHm_v2.0_Chr7g0194161 Rosa chinensis HOM05D005144 ORTHO05D006112 2.0e-65 253.8 187 60.4
THA.LOC104813044 Tarenaya hassleriana HOM05D005144 ORTHO05D006112 2.0e-65 253.8 189 59.3
FAN18G1164 Fragaria x ananassa HOM05D005144 ORTHO05D006112 2.6e-65 253.4 187 59.4
Glyma.05G217900 Glycine max HOM05D005144 ORTHO05D006112 2.6e-65 253.4 184 59.8
FAN13G1564 Fragaria x ananassa HOM05D005144 ORTHO05D006112 4.4e-65 252.7 187 59.4
Potri.003G141600 Populus trichocarpa HOM05D005144 ORTHO05D006112 5.8e-65 252.3 204 55.9
Cc08_g16260 Coffea canephora HOM05D005144 ORTHO05D006112 7.5e-65 251.9 206 53.9
FAN18G2696 Fragaria x ananassa HOM05D005144 ORTHO05D006112 9.8e-65 251.5 187 59.4
FAN04G3040 Fragaria x ananassa HOM05D005144 ORTHO05D006112 1.3e-64 251.1 187 58.8
vmacro13890 Vaccinium macrocarpon HOM05D005144 ORTHO05D006112 1.3e-64 251.1 201 57.2
HPP92_003882 Vanilla planifolia HOM05D005144 ORTHO05D006112 1.3e-64 251.1 186 61.3
Gorai.003G078400 Gossypium raimondii HOM05D005144 ORTHO05D006112 2.2e-64 250.4 190 58.9
Lalb_Chr05g0224021 Lupinus albus HOM05D005144 ORTHO05D006112 2.2e-64 250.4 185 59.5
Gohir.A02G099500 Gossypium hirsutum HOM05D005144 ORTHO05D006112 2.9e-64 250.0 190 60.0
Glyma.08G024000 Glycine max HOM05D005144 ORTHO05D006112 3.7e-64 249.6 185 61.1
TPR.G3399 Trifolium pratense HOM05D005144 ORTHO05D006112 3.7e-64 249.6 190 58.4
Solyc08g082560.3 Solanum lycopersicum HOM05D005144 ORTHO05D006112 6.4e-64 248.8 188 60.1
Sopen08g030810 Solanum pennellii HOM05D005144 ORTHO05D006112 6.4e-64 248.8 188 60.1
Aqoxy5G04282 Aquilegia oxysepala HOM05D005144 ORTHO05D006112 8.3e-64 248.4 201 55.2
CAN.G567.13 Capsicum annuum HOM05D005144 ORTHO05D006112 8.3e-64 248.4 195 59.5
AUR62019860 Chenopodium quinoa HOM05D002356 ORTHO05D006112 8.3e-64 248.4 201 55.7
Hma1.2p1_0359F.1_g135130 Hydrangea macrophylla HOM05D005144 ORTHO05D006112 8.3e-64 248.4 191 58.1
Ah.12g052690 Amaranthus hybridus HOM05D005144 ORTHO05D006112 1.1e-63 248.1 201 56.2
Nitab4.5_0000798g0100 Nicotiana tabacum HOM05D005144 ORTHO05D006112 1.4e-63 247.7 194 58.8
Nitab4.5_0008496g0030 Nicotiana tabacum HOM05D005144 ORTHO05D006112 1.4e-63 247.7 194 58.8
MSTRG.13890 Avicennia marina HOM05D005144 ORTHO05D006112 1.9e-63 247.3 193 58.0
ATR0602G269 Amborella trichopoda HOM05D005144 ORTHO05D006112 2.4e-63 246.9 190 58.9
AUR62010862 Chenopodium quinoa HOM05D005144 ORTHO05D006112 3.2e-63 246.5 196 56.1
Hma1.2p1_0440F.1_g153460 Hydrangea macrophylla HOM05D005144 ORTHO05D006112 3.2e-63 246.5 185 58.9
Hund14208 Selenicereus undatus HOM05D005144 ORTHO05D006112 3.2e-63 246.5 211 55.0
SEGI_08848 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 4.1e-63 246.1 189 59.3
Gohir.D03G084200 Gossypium hirsutum HOM05D005144 ORTHO05D006112 5.4e-63 245.7 190 57.9
Oeu038551.1 Olea europaea HOM05D005144 ORTHO05D006112 7.0e-63 245.4 203 54.2
PSO135G1020 Papaver somniferum HOM05D005144 ORTHO05D006112 9.2e-63 245.0 187 58.8
PSO384G2099 Papaver somniferum HOM05D005144 ORTHO05D006112 9.2e-63 245.0 187 58.8
Rhsim07G0081500 Rhododendron simsii HOM05D005144 ORTHO05D006112 9.2e-63 245.0 207 55.6
Lsat_1_v5_gn_6_8420 Lactuca sativa HOM05D005144 ORTHO05D006112 2.7e-62 243.4 188 56.9
DCAR_006524 Daucus carota HOM05D005144 ORTHO05D006112 3.5e-62 243.0 188 56.9
MSTRG.1800 Avicennia marina HOM05D005144 ORTHO05D006112 6.0e-62 242.3 185 58.4
ECA246G4745 Erigeron canadensis HOM05D005144 ORTHO05D006112 6.0e-62 242.3 190 58.4
Os01g0550200 Oryza sativa ssp. japonica HOM05D005144 ORTHO05D006112 1.3e-61 241.1 196 58.2
MSTRG.11913 Avicennia marina HOM05D005144 ORTHO05D006112 5.0e-61 239.2 197 55.8
Lj2C163G16 Lonicera japonica HOM05D005144 ORTHO05D006112 8.6e-61 238.4 177 58.2
Actinidia22174 Actinidia chinensis HOM05D005144 ORTHO05D006112 2.5e-60 236.9 181 59.7
CDE10G0592 Ceratophyllum demersum HOM05D005144 ORTHO05D006112 3.3e-60 236.5 220 52.3
FvH4_5g04920 Fragaria vesca HOM05D005144 ORTHO05D006112 3.3e-60 236.5 187 56.7
vmacro11343 Vaccinium macrocarpon HOM05D005144 ORTHO05D006112 3.3e-60 236.5 191 56.0
Sabra03G0102000 Salix brachista HOM05D005144 ORTHO05D006112 4.3e-60 236.1 218 51.8
Migut.E01282 Erythranthe guttata HOM05D005144 ORTHO05D006112 1.6e-59 234.2 188 55.9
Zm00001eb356530 Zea mays HOM05D005144 ORTHO05D006112 2.8e-59 233.4 191 59.2
SalBow1G0822 Salvia bowleyana HOM05D005144 ORTHO05D006112 8.0e-59 231.9 198 54.5
Migut.A00621 Erythranthe guttata HOM05D005144 ORTHO05D006112 1.4e-58 231.1 188 55.3
Zm00001eb162420 Zea mays HOM05D005144 ORTHO05D006112 8.9e-58 228.4 198 57.1
SGA_v2.0_scaffold96G29029 Striga asiatica HOM05D005144 ORTHO05D006112 5.8e-57 225.7 186 54.3
Duzib205G1188 Durio zibethinus HOM05D005144 ORTHO05D006112 9.8e-57 224.9 201 53.2
unitig_37.g12128 Utricularia gibba HOM05D000074 ORTHO05D007406 2.9e-56 223.4 202 53.0
Peaxi162Scf00074g00636 Petunia axillaris HOM05D005144 ORTHO05D006112 3.2e-55 219.9 158 62.0
SGA_v2.0_scaffold111G31399 Striga asiatica HOM05D005144 ORTHO05D006112 3.2e-55 219.9 202 50.0
SalBow8G5178 Salvia bowleyana HOM05D005144 ORTHO05D006112 8.6e-45 185.3 271 37.3
AT4G23960 Arabidopsis thaliana HOM05D005144 ORTHO05D006112 3.3e-44 183.3 185 46.5
SEGI_22496 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 9.5e-44 181.8 137 54.7
CARHR125070 Cardamine hirsuta HOM05D005144 ORTHO05D006112 1.1e-42 178.3 191 46.6
Sabra01G0065900 Salix brachista HOM05D005144 ORTHO05D006112 2.4e-42 177.2 131 61.8
Carub.0007s1712 Capsella rubella HOM05D005144 ORTHO05D006112 1.2e-41 174.9 186 45.7
Sc07g0010100 Simmondsia chinensis HOM05D005144 ORTHO05D006112 5.8e-41 172.6 120 64.2
SGA_v2.0_scaffold305G47994 Striga asiatica HOM05D005144 ORTHO05D006112 1.4e-26 124.8 189 38.1
Oeu028702.2 Olea europaea HOM05D005144 ORTHO05D006112 9.0e-26 122.1 96 51.0
COL.COLO4_10724 Corchorus olitorius HOM05D005144 ORTHO05D006112 4.6e-22 109.8 189 36.5
AL7G29350 Arabidopsis lyrata HOM05D005144 ORTHO05D006112 7.9e-22 109.0 121 41.3
Sed0007412 Sechium edule HOM05D005144 ORTHO05D006112 1.2e-17 95.1 83 54.2
Oeu055032.1 Olea europaea HOM05D005144 ORTHO05D006112 2.6e-17 94.0 70 67.1
Nn1g00256 Nelumbo nucifera HOM05D005144 ORTHO05D006112 1.4e-15 88.2 87 44.8
AagrBONN_evm.TU.Sc2ySwM_228.2951 Anthoceros agrestis HOM05D005668 ORTHO05D007082 5.5e-15 86.3 125 33.6
GSVIVG01000309001 Vitis vinifera HOM05D005144 ORTHO05D006112 1.2e-14 85.1 58 70.7
Hund26016 Selenicereus undatus HOM05D005668 ORTHO05D007082 2.1e-14 84.3 118 39.0
CiPaw.09G203400 Carya illinoinensis HOM05D005668 ORTHO05D007082 1.8e-13 81.3 118 37.3
QL07p027771 Quercus lobata HOM05D005668 ORTHO05D007082 2.3e-13 80.9 121 38.8
Sabra01G0065800 Salix brachista HOM05D005144 ORTHO05D006112 2.3e-13 80.9 84 44.0
SEGI_40833 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 3.0e-13 80.5 68 50.0
Duzib093G0236 Durio zibethinus HOM05D005668 ORTHO05D007082 5.1e-13 79.7 118 35.6
CiPaw.10G150900 Carya illinoinensis HOM05D005668 ORTHO05D007082 8.7e-13 79.0 118 36.4
Gohir.D10G244900 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.1e-11 74.3 120 35.0
Gohir.A10G232501 Gossypium hirsutum HOM05D005668 ORTHO05D007082 6.2e-11 72.8 120 34.2
Phvul.006G070500 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 3.1e-10 70.5 118 29.7
CDE05G0028 Ceratophyllum demersum HOM05D006158 ORTHO05D007065 9.0e-10 68.9 52 51.9
SEGI_35617 Sequoiadendron giganteum HOM05D005668 ORTHO05D007082 9.0e-10 68.9 119 31.9
Gorai.011G282300 Gossypium raimondii HOM05D005668 ORTHO05D007082 4.5e-09 66.6 85 36.5
VMungo0540G0458 Vigna mungo HOM05D005144 ORTHO05D006112 3.8e-08 63.5 41 73.2


User provided reference genes

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