Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g4805 Chara braunii HOM05D006981 ORTHO05D008719 3.7e-58 228.0 117 100.0
Cc02_g03150 Coffea canephora HOM05D006981 ORTHO05D008719 3.0e-15 85.5 109 46.8
Mapoly0027s0013 Marchantia polymorpha HOM05D006981 ORTHO05D008719 1.9e-14 82.8 109 40.4
PGR142G3060 Punica granatum HOM05D006981 ORTHO05D008719 2.5e-14 82.4 108 42.6
SGA_v2.0_scaffold2G01066 Striga asiatica HOM05D006981 ORTHO05D008719 7.3e-14 80.9 118 44.1
Lsat_1_v5_gn_8_8340 Lactuca sativa HOM05D006981 ORTHO05D008719 9.5e-14 80.5 109 38.5
Pp3c14_5260 Physcomitrium patens HOM05D006981 ORTHO05D008719 1.2e-13 80.1 108 42.6
Aqoxy7G00390 Aquilegia oxysepala HOM05D006981 ORTHO05D008719 1.6e-13 79.7 106 43.4
CiPaw.03G105000 Carya illinoinensis HOM05D006981 ORTHO05D008719 2.1e-13 79.3 109 45.0
Cre06.g281750 Chlamydomonas reinhardtii HOM05D006981 ORTHO05D008719 2.1e-13 79.3 109 42.2
ECA233G5478 Erigeron canadensis HOM05D006981 ORTHO05D008719 2.1e-13 79.3 109 41.3
HanXRQChr08g0209251 Helianthus annuus HOM05D006981 ORTHO05D008719 3.6e-13 78.6 109 39.4
HPP92_028124 Vanilla planifolia HOM05D006981 ORTHO05D008719 6.2e-13 77.8 111 36.9
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 8.1e-13 77.4 108 39.8
Eucgr.K00242 Eucalyptus grandis HOM05D006981 ORTHO05D008719 1.1e-12 77.0 111 39.6
Cfa008306 Carpinus fangiana HOM05D006981 ORTHO05D008719 1.4e-12 76.6 108 44.4
PSO782G4575 Papaver somniferum HOM05D006981 ORTHO05D008719 1.4e-12 76.6 109 37.6
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 1.4e-12 76.6 107 40.2
HPP92_020865 Vanilla planifolia HOM05D006981 ORTHO05D008719 1.4e-12 76.6 111 36.0
Oeu056238.2 Olea europaea HOM05D006981 ORTHO05D008719 1.8e-12 76.3 106 41.5
MSTRG.27124 Avicennia marina HOM05D006981 ORTHO05D008719 2.3e-12 75.9 110 39.1
Haze_13729 Corylus avellana HOM05D006981 ORTHO05D008719 3.1e-12 75.5 108 39.8
Gohir.D08G111300 Gossypium hirsutum HOM05D006981 ORTHO05D008719 3.1e-12 75.5 110 42.7
Gorai.004G119200 Gossypium raimondii HOM05D006981 ORTHO05D008719 3.1e-12 75.5 110 42.7
MD07G1267100 Malus domestica HOM05D006981 ORTHO05D008719 4.0e-12 75.1 109 43.1
PSO478G2189 Papaver somniferum HOM05D006981 ORTHO05D008719 4.0e-12 75.1 109 37.6
Hund11756 Selenicereus undatus HOM05D006981 ORTHO05D008719 4.0e-12 75.1 107 43.0
vmacro06697 Vaccinium macrocarpon HOM05D006981 ORTHO05D008719 4.0e-12 75.1 114 40.4
Manes.06G146000 Manihot esculenta HOM05D006981 ORTHO05D008719 5.2e-12 74.7 109 40.4
Sc19g0001580 Simmondsia chinensis HOM05D006981 ORTHO05D008719 5.2e-12 74.7 109 43.1
Atru.chr1.479 Acer truncatum HOM05D006981 ORTHO05D008719 6.8e-12 74.3 107 38.3
Lj2g0020265 Lotus japonicus HOM05D006981 ORTHO05D008719 8.9e-12 73.9 114 40.4
QL09p014567 Quercus lobata HOM05D006981 ORTHO05D008719 8.9e-12 73.9 109 40.4
Potri.015G140200 Populus trichocarpa HOM05D006981 ORTHO05D008719 1.2e-11 73.6 110 41.8
Sabra15G0150900 Salix brachista HOM05D006981 ORTHO05D008719 1.2e-11 73.6 109 42.2
Thecc.03G174800 Theobroma cacao HOM05D006981 ORTHO05D008719 1.5e-11 73.2 109 39.4
AagrBONN_evm.TU.Sc2ySwM_369.83 Anthoceros agrestis HOM05D006981 ORTHO05D008719 2.0e-11 72.8 108 38.0
CAN.G28.6 Capsicum annuum HOM05D006981 ORTHO05D008719 2.0e-11 72.8 109 41.3
CsaV3_5G005720 Cucumis sativus L. HOM05D006981 ORTHO05D008719 2.0e-11 72.8 109 37.6
Nitab4.5_0000080g0060 Nicotiana tabacum HOM05D006981 ORTHO05D008719 2.0e-11 72.8 109 40.4
Nn4g26525 Nelumbo nucifera HOM05D006981 ORTHO05D008719 2.6e-11 72.4 109 37.6
MELO3C005381.2 Cucumis melo HOM05D006981 ORTHO05D008719 3.4e-11 72.0 110 37.3
EL10Ac3g05672 Beta vulgaris HOM05D006981 ORTHO05D008719 4.4e-11 71.6 108 41.7
CSS0044451 Camellia sinensis var. sinensis HOM05D006981 ORTHO05D008719 4.4e-11 71.6 109 36.7
MBI17_g21049_MAGBIO Magnolia biondii HOM05D006981 ORTHO05D008719 4.4e-11 71.6 118 34.7
Medtr6g471020 Medicago truncatula HOM05D006981 ORTHO05D008719 4.4e-11 71.6 109 40.4
TAR375G0811 Trochodendron aralioides HOM05D006981 ORTHO05D008719 4.4e-11 71.6 106 38.7
GSVIVG01010548001 Vitis vinifera HOM05D006981 ORTHO05D008719 4.4e-11 71.6 109 38.5
AUR62016001 Chenopodium quinoa HOM05D006981 ORTHO05D008719 5.8e-11 71.2 108 40.7
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 5.8e-11 71.2 109 38.5
Duzib205G0859 Durio zibethinus HOM05D006981 ORTHO05D008719 5.8e-11 71.2 109 39.4
Lj1C995G12 Lonicera japonica HOM05D006981 ORTHO05D008719 5.8e-11 71.2 108 38.0
SEGI_30853 Sequoiadendron giganteum HOM05D006981 ORTHO05D008719 5.8e-11 71.2 91 42.9
FvH4_7g29270 Fragaria vesca HOM05D006981 ORTHO05D008719 7.5e-11 70.9 116 37.9
FAN03G1713 Fragaria x ananassa HOM05D006981 ORTHO05D008719 7.5e-11 70.9 116 37.9
FAN10G3446 Fragaria x ananassa HOM05D006981 ORTHO05D008719 7.5e-11 70.9 116 37.9
COL.COLO4_14290 Corchorus olitorius HOM05D006981 ORTHO05D008719 9.9e-11 70.5 107 41.1
RcHm_v2.0_Chr1g0377021 Rosa chinensis HOM05D006981 ORTHO05D008719 9.9e-11 70.5 107 37.4
PGSC0003DMG400015647 Solanum tuberosum HOM05D006981 ORTHO05D008719 9.9e-11 70.5 109 40.4
Zm00001eb309380 Zea mays HOM05D006981 ORTHO05D008719 9.9e-11 70.5 110 37.3
Ah.13g068510 Amaranthus hybridus HOM05D006981 ORTHO05D008719 1.3e-10 70.1 108 38.9
CDE08G1025 Ceratophyllum demersum HOM05D006981 ORTHO05D008719 1.3e-10 70.1 107 36.4
FAN03G1998 Fragaria x ananassa HOM05D006981 ORTHO05D008719 1.3e-10 70.1 116 37.9
Gohir.A08G100300 Gossypium hirsutum HOM05D006981 ORTHO05D008719 1.3e-10 70.1 109 40.4
Hma1.2p1_0270F.1_g108180 Hydrangea macrophylla HOM05D006981 ORTHO05D008719 1.3e-10 70.1 107 39.3
Sopen06g017220 Solanum pennellii HOM05D006981 ORTHO05D008719 1.3e-10 70.1 109 39.4
Migut.F00354 Erythranthe guttata HOM05D006981 ORTHO05D008719 2.2e-10 69.3 110 39.1
Sed0011448 Sechium edule HOM05D006981 ORTHO05D008719 2.2e-10 69.3 109 37.6
FAN01G2034 Fragaria x ananassa HOM05D006981 ORTHO05D008719 4.9e-10 68.2 107 37.4
Glyma.09G140600 Glycine max HOM05D006981 ORTHO05D008719 4.9e-10 68.2 113 37.2
Manes.09G002400 Manihot esculenta HOM05D006981 ORTHO05D008719 4.9e-10 68.2 120 40.0
arahy.Tifrunner.gnm1.ann1.8WRD93 Arachis hypogaea HOM05D006981 ORTHO05D008719 6.4e-10 67.8 108 39.8
Glyma.16G194500 Glycine max HOM05D006981 ORTHO05D008719 6.4e-10 67.8 113 37.2
TWI14G0356 Tripterygium wilfordii HOM05D006981 ORTHO05D008719 6.4e-10 67.8 106 38.7
arahy.Tifrunner.gnm1.ann1.T9EWQW Arachis hypogaea HOM05D006981 ORTHO05D008719 8.3e-10 67.4 108 38.9
ClCG01G005500 Citrullus lanatus HOM05D003170 ORTHO05D008719 8.3e-10 67.4 108 37.0
unitig_747.g21767 Utricularia gibba HOM05D006981 ORTHO05D008719 8.3e-10 67.4 110 33.6
Phvul.004G118000 Phaseolus vulgaris HOM05D006981 ORTHO05D008719 1.1e-09 67.0 113 37.2
Ciclev10006231m.g Citrus clementina HOM05D006981 ORTHO05D008719 1.4e-09 66.6 109 36.7
Prupe.2G292700 Prunus persica HOM05D006981 ORTHO05D008719 1.4e-09 66.6 113 37.2
SMO141G0174 Selaginella moellendorffii HOM05D006981 ORTHO05D008719 1.4e-09 66.6 108 38.0
FAN06G1994 Fragaria x ananassa HOM05D006981 ORTHO05D008719 1.9e-09 66.2 116 35.3
AUR62021209 Chenopodium quinoa HOM05D006981 ORTHO05D008719 2.4e-09 65.9 109 41.3
Ca_25351_v3 Cicer arietinum L. HOM05D000367 ORTHO05D001438 2.4e-09 65.9 111 38.7
Psat1g030600 Pisum sativum HOM05D006981 ORTHO05D008719 4.1e-09 65.1 92 39.1
CANSAT21G0349 Cannabis sativa HOM05D006981 ORTHO05D008719 5.4e-09 64.7 109 36.7
Cpa.g.sc107.36 Carica papaya HOM05D006981 ORTHO05D008719 5.4e-09 64.7 107 37.4
Solyc06g051300.3 Solanum lycopersicum HOM05D006981 ORTHO05D008719 5.4e-09 64.7 108 38.9
DCAR_009354 Daucus carota HOM05D006981 ORTHO05D008719 2.1e-08 62.8 107 33.6
Nitab4.5_0019580g0020 Nicotiana tabacum HOM05D006981 ORTHO05D008719 2.1e-08 62.8 107 35.5
AL8G26600 Arabidopsis lyrata HOM05D006981 ORTHO05D008719 2.7e-08 62.4 108 35.2
THA.LOC104825097 Tarenaya hassleriana HOM05D006981 ORTHO05D008719 2.7e-08 62.4 105 38.1
Aa31LG3G8600 Aethionema arabicum HOM05D006981 ORTHO05D008719 3.5e-08 62.0 108 36.1
AT5G52220 Arabidopsis thaliana HOM05D006981 ORTHO05D008719 3.5e-08 62.0 108 35.2
A10p09920 Brassica napus HOM05D006981 ORTHO05D008719 4.6e-08 61.6 108 34.3
BraA10t43072Z Brassica rapa HOM05D006981 ORTHO05D008719 4.6e-08 61.6 108 34.3
Carub.0008s1231 Capsella rubella HOM05D006981 ORTHO05D008719 4.6e-08 61.6 108 35.2
Thhalv10015042m.g Eutrema salsugineum HOM05D006981 ORTHO05D008719 4.6e-08 61.6 108 35.2
Lalb_Chr19g0130931 Lupinus albus HOM05D006981 ORTHO05D008719 4.6e-08 61.6 111 34.2
VMungo0464G1391 Vigna mungo HOM05D006981 ORTHO05D008719 4.6e-08 61.6 106 36.8
BcaC04g20601 Brassica carinata HOM05D006981 ORTHO05D008719 6.0e-08 61.2 108 34.3
BolC9t57050H Brassica oleracea HOM05D006981 ORTHO05D008719 6.0e-08 61.2 108 34.3
CARHR265140 Cardamine hirsuta HOM05D006981 ORTHO05D008719 6.0e-08 61.2 108 35.2
C09p41630 Brassica napus HOM05D006981 ORTHO05D008719 7.8e-08 60.8 108 34.3
BcaB08g35575 Brassica carinata HOM05D006981 ORTHO05D008719 1.0e-07 60.5 108 33.3
Sp6g14470 Schrenkiella parvula HOM05D006981 ORTHO05D008719 2.3e-07 59.3 108 34.3
FAN06G2660 Fragaria x ananassa HOM05D006981 ORTHO05D008719 3.0e-07 58.9 116 34.5
Actinidia32871 Actinidia chinensis HOM05D006981 ORTHO05D008719 1.1e-06 57.0 137 30.7
SHI13798 Sapria himalayana HOM05D006981 ORTHO05D008719 2.5e-06 55.8 135 30.4
PRCOL_00004746 Prasinoderma coloniale HOM05D006981 ORTHO05D008719 3.3e-06 55.5 101 34.7
Peaxi162Scf00040g00323 Petunia axillaris HOM05D006981 ORTHO05D008719 9.5e-06 53.9 96 36.5


User provided reference genes

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