Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 4.3e-46 187.6 91 100.0
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 6.9e-20 100.5 79 59.5
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 2.5e-17 92.0 90 51.1
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 2.5e-17 92.0 84 56.0
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 2.5e-17 92.0 87 49.4
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 2.5e-17 92.0 87 49.4
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 3.2e-17 91.7 82 51.2
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 2.1e-16 89.0 89 49.4
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 2.7e-16 88.6 87 49.4
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 4.6e-16 87.8 90 47.8
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 4.6e-16 87.8 87 48.3
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 6.1e-16 87.4 84 51.2
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 1.0e-15 86.7 89 48.3
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 1.0e-15 86.7 90 46.7
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 1.0e-15 86.7 84 51.2
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.4e-15 86.3 87 49.4
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.4e-15 86.3 89 48.3
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 1.8e-15 85.9 87 48.3
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 5.1e-15 84.3 87 46.0
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.7e-15 84.0 89 44.9
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.7e-15 84.0 89 44.9
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 6.7e-15 84.0 87 48.3
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 6.7e-15 84.0 87 48.3
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 6.7e-15 84.0 87 48.3
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 8.8e-15 83.6 87 47.1
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 8.8e-15 83.6 87 48.3
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 8.8e-15 83.6 90 44.4
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 1.1e-14 83.2 87 48.3
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-14 83.2 89 44.9
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 1.1e-14 83.2 84 50.0
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 1.5e-14 82.8 87 46.0
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 1.5e-14 82.8 87 46.0
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 1.9e-14 82.4 84 46.4
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.9e-14 82.4 79 51.9
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 1.9e-14 82.4 87 46.0
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.9e-14 82.4 87 46.0
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.9e-14 82.4 87 46.0
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 2.5e-14 82.0 84 46.4
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 2.5e-14 82.0 84 46.4
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.5e-14 82.0 84 46.4
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 3.3e-14 81.6 87 46.0
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 3.3e-14 81.6 84 46.4
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 3.3e-14 81.6 87 44.8
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 3.3e-14 81.6 87 44.8
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 3.3e-14 81.6 84 46.4
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 3.3e-14 81.6 90 45.6
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 3.3e-14 81.6 84 45.2
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 4.3e-14 81.3 87 43.7
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 4.3e-14 81.3 87 43.7
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 4.3e-14 81.3 84 47.6
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 4.3e-14 81.3 87 46.0
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 5.7e-14 80.9 90 44.4
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 7.4e-14 80.5 89 43.8
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 7.4e-14 80.5 84 45.2
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 7.4e-14 80.5 91 46.2
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 7.4e-14 80.5 84 45.2
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 7.4e-14 80.5 90 43.3
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 9.7e-14 80.1 84 46.4
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 9.7e-14 80.1 87 44.8
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 9.7e-14 80.1 84 46.4
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 9.7e-14 80.1 84 44.0
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 9.7e-14 80.1 87 44.8
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 9.7e-14 80.1 87 43.7
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 1.3e-13 79.7 83 45.8
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 1.3e-13 79.7 83 45.8
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 1.3e-13 79.7 87 46.0
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 1.7e-13 79.3 87 43.7
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 1.7e-13 79.3 87 47.1
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.7e-13 79.3 84 44.0
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 1.7e-13 79.3 84 46.4
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 2.2e-13 79.0 84 46.4
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 2.8e-13 78.6 84 47.6
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 2.8e-13 78.6 87 42.5
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 3.7e-13 78.2 87 42.5
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 3.7e-13 78.2 85 42.4
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 3.7e-13 78.2 78 51.3
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 3.7e-13 78.2 84 47.6
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 4.8e-13 77.8 89 42.7
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 4.8e-13 77.8 84 45.2
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 6.3e-13 77.4 85 47.1
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 6.3e-13 77.4 84 47.6
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 6.3e-13 77.4 84 46.4
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 6.3e-13 77.4 83 49.4
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 8.2e-13 77.0 84 45.2
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 1.1e-12 76.6 89 42.7
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.1e-12 76.6 84 45.2
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 1.1e-12 76.6 89 43.8
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 1.1e-12 76.6 84 45.2
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 1.1e-12 76.6 84 45.2
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.8e-12 75.9 85 45.9
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.8e-12 75.9 83 48.2
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.8e-12 75.9 89 43.8
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 1.8e-12 75.9 83 49.4
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 2.4e-12 75.5 84 44.0
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.4e-12 75.5 83 48.2
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.4e-12 75.5 89 43.8
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 2.4e-12 75.5 84 46.4
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 2.4e-12 75.5 87 43.7
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 3.1e-12 75.1 82 46.3
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 4.1e-12 74.7 87 42.5
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 5.3e-12 74.3 87 46.0
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 5.3e-12 74.3 87 46.0
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 6.9e-12 73.9 83 45.8
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 6.9e-12 73.9 85 43.5
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 2.0e-11 72.4 83 43.4
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 2.6e-11 72.0 83 47.0
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.6e-11 72.0 84 44.0
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 3.4e-11 71.6 80 45.0
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 1.0e-10 70.1 88 40.9
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 1.3e-10 69.7 89 42.7
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 2.9e-10 68.6 88 40.9
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 5.0e-10 67.8 91 39.6
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 7.2e-09 63.9 82 42.7
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 1.2e-08 63.2 68 48.5
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.1e-08 62.4 70 45.7
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 1.4e-07 59.7 62 48.4
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 2.3e-07 58.9 110 33.6
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 5.1e-07 57.8 65 41.5
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.7e-07 57.4 66 43.9
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 3.3e-06 55.1 113 32.7
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 3.3e-06 55.1 68 41.2
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 7.4e-06 53.9 58 44.8


User provided reference genes

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