Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 0.0e+00 1203.3 610 100.0
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 8.4e-146 521.5 662 42.6
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 5.5e-145 518.8 608 46.1
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 1.8e-143 513.8 660 42.0
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 4.3e-142 509.2 660 42.0
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 4.3e-142 509.2 664 43.2
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 1.0e-135 488.0 618 42.6
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 8.2e-133 478.4 662 39.9
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 4.1e-132 476.1 662 40.2
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 6.9e-132 475.3 630 40.0
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 6.9e-132 475.3 662 40.2
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 5.9e-131 472.2 658 40.6
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 5.9e-131 472.2 656 39.8
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 1.7e-130 470.7 661 39.3
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 1.7e-130 470.7 627 40.8
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 2.2e-130 470.3 661 39.5
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 2.9e-130 469.9 663 39.7
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 3.8e-130 469.5 662 39.3
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 3.8e-130 469.5 662 39.6
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 5.0e-130 469.2 628 40.4
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 5.0e-130 469.2 662 39.0
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 6.5e-130 468.8 658 40.3
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 1.1e-129 468.0 661 39.3
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 1.4e-129 467.6 660 39.1
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 1.4e-129 467.6 661 39.5
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 1.9e-129 467.2 661 39.3
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 4.2e-129 466.1 661 39.0
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 4.2e-129 466.1 661 39.5
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 4.2e-129 466.1 661 39.3
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 4.2e-129 466.1 661 39.8
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.2e-128 464.5 661 39.2
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 2.1e-128 463.8 661 39.2
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 2.7e-128 463.4 663 40.0
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 3.6e-128 463.0 661 38.7
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 3.6e-128 463.0 662 39.4
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 3.6e-128 463.0 662 40.0
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 3.6e-128 463.0 661 38.9
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 4.6e-128 462.6 661 40.2
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 6.1e-128 462.2 655 40.2
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 7.9e-128 461.8 661 39.9
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 1.0e-127 461.5 659 39.5
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 1.4e-127 461.1 661 39.6
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 1.8e-127 460.7 659 39.2
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 2.3e-127 460.3 663 39.2
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 3.9e-127 459.5 665 38.3
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 5.1e-127 459.1 662 38.8
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 1.1e-126 458.0 661 39.6
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 2.0e-126 457.2 649 40.1
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 1.3e-125 454.5 665 38.9
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 4.8e-125 452.6 668 38.0
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 1.4e-124 451.1 662 38.1
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 1.8e-124 450.7 661 38.0
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 2.4e-124 450.3 624 40.1
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 1.5e-123 447.6 663 39.5
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 5.9e-123 445.7 661 38.4
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.0e-122 444.9 661 38.4
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 1.7e-122 444.1 668 38.2
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 2.9e-122 443.4 661 37.8
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 3.8e-122 443.0 661 38.6
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 6.5e-122 442.2 661 38.0
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 2.1e-120 437.2 671 37.6
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 2.7e-120 436.8 597 41.0
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 2.7e-120 436.8 653 38.0
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 3.6e-120 436.4 653 38.0
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 1.4e-119 434.5 654 38.8
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 1.1e-118 431.4 662 37.0
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 2.0e-118 430.6 730 35.6
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 2.4e-116 423.7 642 38.2
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 2.0e-115 420.6 660 35.6
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 2.9e-114 416.8 667 37.8
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 1.5e-113 414.5 771 33.7
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 2.1e-112 410.6 669 36.6
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 1.0e-111 408.3 664 36.1
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 8.8e-111 405.2 665 35.6
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 8.8e-111 405.2 665 35.6
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 8.8e-111 405.2 665 35.6
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 1.1e-110 404.8 666 35.0
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 2.0e-110 404.1 663 35.3
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 3.3e-110 403.3 663 35.1
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 5.7e-110 402.5 670 34.9
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 9.7e-110 401.7 669 35.0
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 7.0e-108 395.6 663 34.8
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 1.6e-107 394.4 661 36.9
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 2.0e-107 394.0 663 34.5
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 5.9e-107 392.5 593 37.8
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 2.2e-106 390.6 662 33.8
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 5.5e-105 386.0 669 35.3
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 1.1e-100 371.7 661 35.6
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 4.1e-92 343.2 550 36.5
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 8.6e-82 308.9 475 37.5
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 6.2e-80 302.8 524 33.0
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 4.6e-75 286.6 337 43.0
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 5.0e-74 283.1 359 40.9
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 5.2e-63 246.5 275 43.6
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 6.4e-61 239.6 426 33.8
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 2.7e-59 234.2 424 36.8
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 5.2e-55 219.9 504 30.6
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 8.9e-55 219.2 249 45.0
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 9.9e-54 215.7 533 28.3
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 2.3e-50 204.5 391 32.5
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 1.1e-49 202.2 223 44.8
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 2.1e-48 198.0 348 37.1
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 4.9e-45 186.8 255 37.3
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 6.4e-45 186.4 209 42.1
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 2.4e-44 184.5 269 36.8
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 3.5e-43 180.6 233 38.2
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 2.3e-42 177.9 267 39.3
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 6.9e-39 166.4 233 36.5
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 9.0e-39 166.0 476 27.1
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 1.1e-33 149.1 698 25.6
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 4.9e-29 133.7 139 47.5
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 5.0e-21 107.1 141 37.6
Cre12.g532650 Chlamydomonas reinhardtii HOM05D006472 ORTHO05D008222 4.6e-19 100.5 637 23.1
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 8.2e-16 89.7 68 69.1
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 2.4e-15 88.2 217 28.1
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 9.4e-12 76.3 98 37.8
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.6e-11 75.5 79 43.0
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 9.7e-09 66.2 66 51.5
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 5.9e-06 57.0 81 33.3


User provided reference genes

Program Settings