Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g46399 Chara braunii HOM05D000874 ORTHO05D001049 6.8e-262 907.1 578 100.0
CBR_g54065 Chara braunii HOM05D000874 ORTHO05D001049 1.3e-193 680.2 617 69.7
CBR_g40213 Chara braunii HOM05D000874 ORTHO05D001049 1.1e-09 69.3 83 41.0
BcaB04g19518 Brassica carinata HOM05D000874 ORTHO05D001049 1.4e-09 68.9 79 44.3
BcaC04g23833 Brassica carinata HOM05D000874 ORTHO05D001049 2.4e-09 68.2 79 43.0
A09p04120 Brassica napus HOM05D000874 ORTHO05D001049 3.2e-09 67.8 79 43.0
BraA09t36048Z Brassica rapa HOM05D000874 ORTHO05D001049 3.2e-09 67.8 79 43.0
AT3G29760 Arabidopsis thaliana HOM05D000874 ORTHO05D001049 4.1e-09 67.4 79 43.0
CARHR153160 Cardamine hirsuta HOM05D000874 ORTHO05D001049 4.1e-09 67.4 79 44.3
C09p04330 Brassica napus HOM05D000874 ORTHO05D001049 7.0e-09 66.6 79 41.8
BolC9t53365H Brassica oleracea HOM05D000874 ORTHO05D001049 7.0e-09 66.6 79 41.8
Nn3g17472 Nelumbo nucifera HOM05D000874 ORTHO05D001049 7.0e-09 66.6 72 44.4
Psat3g203040 Pisum sativum HOM05D000874 ORTHO05D001049 7.0e-09 66.6 71 43.7
AL5G20130 Arabidopsis lyrata HOM05D000874 ORTHO05D001049 1.2e-08 65.9 90 37.8
Carub.0005s0832 Capsella rubella HOM05D000874 ORTHO05D001049 2.0e-08 65.1 79 43.0
PGR042G3717 Punica granatum HOM05D000874 ORTHO05D001049 2.7e-08 64.7 72 43.1
THA.LOC104812110 Tarenaya hassleriana HOM05D000874 ORTHO05D001049 2.7e-08 64.7 68 44.1
CANSAT64G0133 Cannabis sativa HOM05D000874 ORTHO05D001049 3.5e-08 64.3 67 46.3
Manes.14G086700 Manihot esculenta HOM05D000874 ORTHO05D001049 3.5e-08 64.3 72 41.7
Ah.02g114140 Amaranthus hybridus HOM05D000874 ORTHO05D001049 4.6e-08 63.9 110 38.2
TAR371G0757 Trochodendron aralioides HOM05D000874 ORTHO05D001049 4.6e-08 63.9 72 41.7
Atru.chr9.537 Acer truncatum HOM05D000874 ORTHO05D001049 6.0e-08 63.5 72 41.7
Actinidia38430 Actinidia chinensis HOM05D000874 ORTHO05D001049 6.0e-08 63.5 67 43.3
Cpa.g.sc14.191 Carica papaya HOM05D000874 ORTHO05D001049 6.0e-08 63.5 80 45.0
Duzib147G0129 Durio zibethinus HOM05D000874 ORTHO05D001049 6.0e-08 63.5 79 43.0
Thhalv10004387m.g Eutrema salsugineum HOM05D000874 ORTHO05D001049 6.0e-08 63.5 79 41.8
Nn4g23457 Nelumbo nucifera HOM05D000874 ORTHO05D001049 6.0e-08 63.5 67 44.8
PSO017G2036 Papaver somniferum HOM05D000874 ORTHO05D001049 6.0e-08 63.5 62 45.2
Rhsim08G0144600 Rhododendron simsii HOM05D000874 ORTHO05D001049 6.0e-08 63.5 76 43.4
AUR62038217 Chenopodium quinoa HOM05D000874 ORTHO05D001049 7.8e-08 63.2 81 40.7
Sp2g18040 Schrenkiella parvula HOM05D000874 ORTHO05D001049 7.8e-08 63.2 79 41.8
AUR62030089 Chenopodium quinoa HOM05D000874 ORTHO05D001049 1.0e-07 62.8 96 38.5
Ciclev10013325m.g Citrus clementina HOM05D000874 ORTHO05D001049 1.0e-07 62.8 89 38.2
Cc00_g03500 Coffea canephora HOM05D000874 ORTHO05D001049 1.0e-07 62.8 98 36.7
Gohir.A09G008700 Gossypium hirsutum HOM05D000874 ORTHO05D001049 1.0e-07 62.8 68 44.1
Gohir.D09G008000 Gossypium hirsutum HOM05D000874 ORTHO05D001049 1.0e-07 62.8 68 44.1
Gorai.006G009600 Gossypium raimondii HOM05D000874 ORTHO05D001049 1.0e-07 62.8 68 44.1
HPP92_019467 Vanilla planifolia HOM05D000874 ORTHO05D001049 1.0e-07 62.8 87 41.4
GSVIVG01032915001 Vitis vinifera HOM05D000874 ORTHO05D001049 1.0e-07 62.8 79 43.0
HanXRQChr16g0521781 Helianthus annuus HOM05D000874 ORTHO05D001049 1.3e-07 62.4 67 43.3
TAR629G0122 Trochodendron aralioides HOM05D000874 ORTHO05D001049 1.3e-07 62.4 72 40.3
ClCG07G016520 Citrullus lanatus HOM05D000874 ORTHO05D001049 1.7e-07 62.0 71 43.7
Migut.D01628 Erythranthe guttata HOM05D000874 ORTHO05D001049 1.7e-07 62.0 103 38.8
Oeu017181.1 Olea europaea HOM05D000874 ORTHO05D001049 1.7e-07 62.0 67 44.8
TWI09G0140 Tripterygium wilfordii HOM05D000874 ORTHO05D001049 1.7e-07 62.0 72 44.4
TWI81G1023 Tripterygium wilfordii HOM05D000874 ORTHO05D001049 1.7e-07 62.0 67 43.3
MD06G1203100 Malus domestica HOM05D000874 ORTHO05D001049 2.3e-07 61.6 81 43.2
QL02p067387 Quercus lobata HOM05D000874 ORTHO05D001049 2.3e-07 61.6 72 38.9
Ah.13g073700 Amaranthus hybridus HOM05D000874 ORTHO05D001049 3.0e-07 61.2 81 40.7
Haze_19522 Corylus avellana HOM05D000874 ORTHO05D001049 3.0e-07 61.2 87 33.3
THA.LOC104805516 Tarenaya hassleriana HOM05D000874 ORTHO05D001049 3.0e-07 61.2 67 43.3
Atru.chr8.481 Acer truncatum HOM05D000874 ORTHO05D001049 3.9e-07 60.8 79 43.0
AL7G26780 Arabidopsis lyrata HOM05D000874 ORTHO05D001049 3.9e-07 60.8 72 43.1
arahy.Tifrunner.gnm1.ann1.V07LAM Arachis hypogaea HOM05D000874 ORTHO05D001049 3.9e-07 60.8 67 40.3
Phvul.008G031500 Phaseolus vulgaris HOM05D000874 ORTHO05D001049 3.9e-07 60.8 72 37.5
Aa31LG2G3850 Aethionema arabicum HOM05D000874 ORTHO05D001049 5.0e-07 60.5 80 40.0
COL.COLO4_37968 Corchorus olitorius HOM05D000874 ORTHO05D001049 5.0e-07 60.5 79 43.0
MELO3C017233.2 Cucumis melo HOM05D000874 ORTHO05D001049 5.0e-07 60.5 71 39.4
DCAR_010160 Daucus carota HOM05D000874 ORTHO05D001049 5.0e-07 60.5 72 40.3
Manes.06G083200 Manihot esculenta HOM05D000874 ORTHO05D001049 5.0e-07 60.5 62 45.2
Oeu040989.1 Olea europaea HOM05D001399 ORTHO05D001049 5.0e-07 60.5 85 38.8
Os03g0755800 Oryza sativa ssp. japonica HOM05D000874 ORTHO05D001049 5.0e-07 60.5 67 41.8
SalBow7G4461 Salvia bowleyana HOM05D000874 ORTHO05D001049 5.0e-07 60.5 68 42.6
vmacro07760 Vaccinium macrocarpon HOM05D000874 ORTHO05D001049 5.0e-07 60.5 131 32.1
BcaC07g38930 Brassica carinata HOM05D000874 ORTHO05D001049 6.6e-07 60.1 72 41.7
C08p18780 Brassica napus HOM05D000874 ORTHO05D001049 6.6e-07 60.1 72 41.7
BolC8t49504H Brassica oleracea HOM05D000874 ORTHO05D001049 6.6e-07 60.1 72 41.7
Cfa016521 Carpinus fangiana HOM05D000874 ORTHO05D001049 6.6e-07 60.1 87 34.5
Dinv22768 Davidia involucrata HOM05D000874 ORTHO05D001049 6.6e-07 60.1 67 43.3
Oeu062169.2 Olea europaea HOM05D000874 ORTHO05D001049 6.6e-07 60.1 67 41.8
SGA_v2.0_scaffold4G02371 Striga asiatica HOM05D000874 ORTHO05D001049 6.6e-07 60.1 72 41.7
Thecc.05G079800 Theobroma cacao HOM05D000874 ORTHO05D001049 6.6e-07 60.1 92 37.0
Cpa.g.sc94.66 Carica papaya HOM05D000874 ORTHO05D001049 8.6e-07 59.7 72 41.7
HanXRQChr02g0041441 Helianthus annuus HOM05D000874 ORTHO05D001049 8.6e-07 59.7 67 38.8
Phvul.004G037900 Phaseolus vulgaris HOM05D000874 ORTHO05D001049 8.6e-07 59.7 67 41.8
Sc14g0006370 Simmondsia chinensis HOM05D000874 ORTHO05D001049 8.6e-07 59.7 101 34.7
Actinidia16135 Actinidia chinensis HOM05D000874 ORTHO05D001049 1.1e-06 59.3 67 41.8
FAN02G1610 Fragaria x ananassa HOM05D000874 ORTHO05D001049 1.1e-06 59.3 81 38.3
Lju41C2T8 Lonicera japonica HOM05D000874 ORTHO05D001049 1.1e-06 59.3 67 41.8
Lj2g0001379 Lotus japonicus HOM05D000874 ORTHO05D001049 1.1e-06 59.3 67 41.8
Manes.02G056200 Manihot esculenta HOM05D000874 ORTHO05D001049 1.1e-06 59.3 71 43.7
PGR042G1772 Punica granatum HOM05D000874 ORTHO05D001049 1.1e-06 59.3 72 37.5
TWI53G0240 Tripterygium wilfordii HOM05D000874 ORTHO05D001049 1.1e-06 59.3 83 34.9
Sabra04G0070000 Salix brachista HOM05D000874 ORTHO05D001049 1.5e-06 58.9 72 38.9
HPP92_020452 Vanilla planifolia HOM05D000874 ORTHO05D001049 1.5e-06 58.9 76 43.4
AT4G26190 Arabidopsis thaliana HOM05D000874 ORTHO05D001049 1.9e-06 58.5 72 41.7
EL10Ac5g11156 Beta vulgaris HOM05D000874 ORTHO05D001049 1.9e-06 58.5 122 32.0
Carub.0007s1476 Capsella rubella HOM05D000874 ORTHO05D001049 1.9e-06 58.5 72 43.1
FvH4_6g46700 Fragaria vesca HOM05D000874 ORTHO05D001049 1.9e-06 58.5 81 38.3
FAN14G1882 Fragaria x ananassa HOM05D000874 ORTHO05D001049 1.9e-06 58.5 81 38.3
Zm00001eb214660 Zea mays HOM05D000874 ORTHO05D001049 1.9e-06 58.5 83 37.3
arahy.Tifrunner.gnm1.ann1.NPQ6GC Arachis hypogaea HOM05D000874 ORTHO05D001049 2.5e-06 58.2 67 38.8
Ciclev10018923m.g Citrus clementina HOM05D000874 ORTHO05D001049 2.5e-06 58.2 72 40.3
Thhalv10012375m.g Eutrema salsugineum HOM05D000874 ORTHO05D001049 2.5e-06 58.2 91 34.1
Gohir.A07G067700 Gossypium hirsutum HOM05D000874 ORTHO05D001049 2.5e-06 58.2 72 40.3
Gohir.D07G072300 Gossypium hirsutum HOM05D000874 ORTHO05D001049 2.5e-06 58.2 72 40.3
Gorai.001G076500 Gossypium raimondii HOM05D000874 ORTHO05D001049 2.5e-06 58.2 72 40.3
Sp7g05270 Schrenkiella parvula HOM05D000874 ORTHO05D001049 2.5e-06 58.2 90 35.6
Sopen02g016030 Solanum pennellii HOM05D000874 ORTHO05D001049 2.5e-06 58.2 72 40.3
A08p30310 Brassica napus HOM05D000874 ORTHO05D001049 3.3e-06 57.8 72 40.3
BraA08t34964Z Brassica rapa HOM05D000874 ORTHO05D001049 3.3e-06 57.8 72 40.3
CSS0021526 Camellia sinensis var. sinensis HOM05D000874 ORTHO05D001049 3.3e-06 57.8 79 38.0
CSS0038877 Camellia sinensis var. sinensis HOM05D000874 ORTHO05D001049 3.3e-06 57.8 79 38.0
Oeu025532.3 Olea europaea HOM05D000874 ORTHO05D001049 3.3e-06 57.8 67 41.8
Peaxi162Scf00991g00016 Petunia axillaris HOM05D000874 ORTHO05D001049 3.3e-06 57.8 73 38.4
RcHm_v2.0_Chr2g0165581 Rosa chinensis HOM05D000874 ORTHO05D001049 3.3e-06 57.8 83 36.1
Sed0009455 Sechium edule HOM05D000874 ORTHO05D001049 3.3e-06 57.8 72 38.9
COL.COLO4_29833 Corchorus olitorius HOM05D000874 ORTHO05D001049 4.3e-06 57.4 72 38.9
FvH4_5g13671 Fragaria vesca HOM05D000874 ORTHO05D001049 4.3e-06 57.4 67 40.3
FAN18G0264 Fragaria x ananassa HOM05D000874 ORTHO05D001267 4.3e-06 57.4 67 40.3
PSO017G1675 Papaver somniferum HOM05D000874 ORTHO05D001049 4.3e-06 57.4 62 43.5
Potri.015G059000 Populus trichocarpa HOM05D000874 ORTHO05D001049 4.3e-06 57.4 92 34.8
SalBow1G4387 Salvia bowleyana HOM05D000874 ORTHO05D001049 4.3e-06 57.4 95 34.7
Solyc02g065790.3 Solanum lycopersicum HOM05D000874 ORTHO05D001049 4.3e-06 57.4 72 40.3
CsaV3_6G040360 Cucumis sativus L. HOM05D000874 ORTHO05D001049 5.6e-06 57.0 87 35.6
ECA247G2112 Erigeron canadensis HOM05D000874 ORTHO05D001049 5.6e-06 57.0 67 38.8
Sp1g30480 Schrenkiella parvula HOM05D000874 ORTHO05D001049 5.6e-06 57.0 90 34.4
MSTRG.23878 Avicennia marina HOM05D000874 ORTHO05D001049 7.3e-06 56.6 72 38.9
COL.COLO4_37969 Corchorus olitorius HOM05D000874 ORTHO05D001049 7.3e-06 56.6 67 41.8
MELO3C024511.2 Cucumis melo HOM05D000874 ORTHO05D001049 7.3e-06 56.6 64 40.6
Os07g0109300 Oryza sativa ssp. japonica HOM05D000874 ORTHO05D001049 7.3e-06 56.6 82 37.8
RhsimUnG0020400 Rhododendron simsii HOM05D000874 ORTHO05D001049 7.3e-06 56.6 110 32.7
TWI32G0665 Tripterygium wilfordii HOM05D000874 ORTHO05D001049 7.3e-06 56.6 73 38.4
Zm00001eb307280 Zea mays HOM05D000874 ORTHO05D001049 7.3e-06 56.6 73 41.1
Aqoxy3G03673 Aquilegia oxysepala HOM05D000874 ORTHO05D001049 9.5e-06 56.2 72 37.5
CARHR233720 Cardamine hirsuta HOM05D000874 ORTHO05D001049 9.5e-06 56.2 72 40.3
MD17G1061400 Malus domestica HOM05D000874 ORTHO05D001049 9.5e-06 56.2 67 40.3
Peaxi162Scf00991g00113 Petunia axillaris HOM05D000874 ORTHO05D001049 9.5e-06 56.2 72 38.9
Pp3c8_24140 Physcomitrium patens HOM05D000874 ORTHO05D001049 9.5e-06 56.2 83 34.9
Thecc.04G097500 Theobroma cacao HOM05D000874 ORTHO05D001049 9.5e-06 56.2 67 41.8
VMungo0464G1171 Vigna mungo HOM05D000874 ORTHO05D001049 9.5e-06 56.2 72 36.1


User provided reference genes

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