Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 4.5e-200 701.0 356 100.0
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 1.5e-73 280.8 323 48.9
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 4.9e-69 265.8 313 46.0
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.4e-63 247.7 345 40.3
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 4.9e-61 239.2 344 39.5
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 1.4e-60 237.7 338 42.0
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 7.0e-60 235.3 339 39.2
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 1.2e-59 234.6 339 41.6
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 1.2e-59 234.6 339 41.6
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 1.6e-59 234.2 339 41.3
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 2.0e-59 233.8 310 43.9
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 4.6e-59 232.6 338 40.5
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 6.0e-59 232.3 334 38.6
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 7.8e-59 231.9 334 41.0
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 1.0e-58 231.5 340 40.3
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 1.0e-58 231.5 338 41.4
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 1.0e-58 231.5 311 43.1
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 1.3e-58 231.1 310 42.9
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 1.3e-58 231.1 338 41.4
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 1.3e-58 231.1 338 41.4
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 1.3e-58 231.1 334 41.3
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 1.7e-58 230.7 310 42.9
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 1.7e-58 230.7 332 39.5
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 1.7e-58 230.7 311 41.2
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 2.3e-58 230.3 342 39.5
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 3.0e-58 229.9 332 40.1
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 3.0e-58 229.9 310 42.6
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 3.0e-58 229.9 335 40.3
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 3.9e-58 229.6 308 43.5
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 3.9e-58 229.6 308 43.5
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 3.9e-58 229.6 308 43.5
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 3.9e-58 229.6 331 38.7
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 3.9e-58 229.6 332 39.2
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.9e-58 229.6 336 38.7
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 6.6e-58 228.8 337 38.9
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 8.6e-58 228.4 330 37.9
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 8.6e-58 228.4 337 39.8
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 1.9e-57 227.3 339 41.3
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 2.5e-57 226.9 334 39.5
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 2.5e-57 226.9 311 39.2
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 3.3e-57 226.5 338 39.3
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 3.3e-57 226.5 337 38.3
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 3.3e-57 226.5 334 38.9
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 4.3e-57 226.1 342 38.3
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 5.6e-57 225.7 336 36.3
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 7.3e-57 225.3 335 39.4
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 7.3e-57 225.3 334 38.9
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 7.3e-57 225.3 334 38.9
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 7.3e-57 225.3 343 39.9
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 1.6e-56 224.2 336 39.0
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 1.6e-56 224.2 341 39.0
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.6e-56 223.0 323 40.2
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 3.6e-56 223.0 338 38.8
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 8.1e-56 221.9 311 39.5
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.4e-55 221.1 323 40.2
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 1.8e-55 220.7 339 37.2
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 3.1e-55 219.9 331 39.0
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 4.0e-55 219.5 320 40.0
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 4.0e-55 219.5 313 39.9
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 5.2e-55 219.2 340 39.1
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 1.5e-54 217.6 311 40.2
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 1.5e-54 217.6 313 38.7
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 3.4e-54 216.5 338 37.3
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 4.4e-54 216.1 316 39.9
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 4.4e-54 216.1 339 36.6
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 5.8e-54 215.7 311 39.5
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 5.8e-54 215.7 337 36.5
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 5.8e-54 215.7 331 36.6
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 7.5e-54 215.3 310 38.1
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 7.5e-54 215.3 335 38.2
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 7.5e-54 215.3 347 38.3
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 7.5e-54 215.3 347 38.3
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 7.5e-54 215.3 334 37.4
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 1.3e-53 214.5 338 37.6
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 1.3e-53 214.5 310 40.6
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 1.3e-53 214.5 315 38.4
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.7e-53 214.2 315 37.8
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 2.9e-53 213.4 308 39.3
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 3.7e-53 213.0 333 36.9
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 8.3e-53 211.8 339 36.6
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.1e-52 211.5 339 36.3
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.4e-52 211.1 339 37.2
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 2.4e-52 210.3 352 37.2
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 2.4e-52 210.3 338 37.9
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 3.2e-52 209.9 334 37.1
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 5.4e-52 209.1 335 38.8
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 5.4e-52 209.1 330 37.3
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 9.2e-52 208.4 331 37.2
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 1.2e-51 208.0 357 36.7
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 1.2e-51 208.0 333 36.6
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 1.6e-51 207.6 335 37.0
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 1.6e-51 207.6 344 37.8
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.6e-51 207.6 339 36.3
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 2.7e-51 206.8 346 37.6
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 4.6e-51 206.1 331 38.4
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 7.8e-51 205.3 334 35.9
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 1.7e-50 204.1 332 37.0
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 3.0e-50 203.4 340 35.0
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 3.0e-50 203.4 320 37.2
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 6.6e-50 202.2 329 36.5
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 8.6e-50 201.8 337 37.1
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 3.3e-49 199.9 331 37.5
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 4.3e-49 199.5 331 38.7
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 5.6e-49 199.1 349 37.2
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 5.6e-49 199.1 310 38.4
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 5.6e-49 199.1 332 36.7
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 1.6e-48 197.6 333 37.2
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 1.8e-47 194.1 310 37.1
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 4.0e-47 193.0 340 36.8
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 1.2e-46 191.4 331 33.8
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 2.0e-46 190.7 334 36.8
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.0e-46 190.7 335 36.1
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 2.6e-46 190.3 339 36.9
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 3.4e-46 189.9 302 35.8
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 3.4e-46 189.9 330 34.5
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 9.9e-46 188.3 333 36.9
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 9.9e-46 188.3 254 40.9
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.3e-45 188.0 337 33.2
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 2.2e-45 187.2 328 36.3
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 3.7e-45 186.4 326 36.5
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 3.7e-45 186.4 328 36.0
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 4.9e-45 186.0 323 34.4
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 1.4e-44 184.5 311 37.0
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 1.4e-44 184.5 311 37.0
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.4e-44 183.7 334 33.5
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 2.4e-44 183.7 334 33.5
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 3.2e-44 183.3 264 37.5
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 4.1e-44 183.0 301 35.9
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 1.2e-43 181.4 282 38.7
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.2e-43 181.4 328 32.9
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 1.6e-43 181.0 322 33.9
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 2.7e-43 180.3 322 33.9
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.7e-43 180.3 332 32.5
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 3.5e-43 179.9 332 32.8
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 3.5e-43 179.9 332 32.8
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 1.7e-42 177.6 266 38.3
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 1.1e-41 174.9 319 33.9
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 7.3e-41 172.2 340 32.4
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.8e-40 170.2 281 37.7
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 2.4e-39 167.2 313 33.5
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 2.2e-37 160.6 312 32.7
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 1.6e-35 154.5 333 30.6
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 3.5e-35 153.3 279 36.2
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 1.5e-33 147.9 187 43.9
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 3.6e-32 143.3 187 41.2
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 6.2e-32 142.5 348 29.0
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.1e-31 141.7 272 32.7
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 1.8e-31 141.0 255 34.5
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 4.0e-31 139.8 273 32.2
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 6.9e-31 139.0 175 45.7
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.3e-29 134.8 187 38.5
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 8.4e-29 132.1 203 36.0
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 7.1e-28 129.0 187 38.0
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.2e-27 128.3 187 41.2
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 8.7e-26 122.1 105 53.3
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 1.1e-25 121.7 321 32.7
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 1.5e-25 121.3 190 37.9
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 9.0e-23 112.1 198 33.8
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 7.6e-22 109.0 255 31.0
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 9.9e-22 108.6 182 35.2
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 1.4e-20 104.8 327 25.7
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 3.2e-20 103.6 141 37.6
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.0e-18 98.6 185 31.9
SMO351G0034 Selaginella moellendorffii HOM05D003755 ORTHO05D376906 1.9e-17 94.4 295 29.5
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 3.3e-17 93.6 161 39.8
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 1.6e-16 91.3 92 46.7
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 5.8e-14 82.8 101 43.6
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 5.8e-14 82.8 94 41.5
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 1.7e-13 81.3 164 31.1
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 3.5e-11 73.6 71 46.5
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 4.5e-06 56.6 47 48.9


User provided reference genes

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