Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 1.4e-96 356.3 185 100.0
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 7.6e-58 227.6 185 61.1
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 6.5e-57 224.6 185 58.9
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 8.4e-57 224.2 184 60.9
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 1.1e-56 223.8 184 58.2
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.9e-56 223.0 185 58.4
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 2.5e-56 222.6 185 57.8
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 7.1e-56 221.1 185 59.5
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 1.6e-55 219.9 185 58.9
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 2.7e-55 219.2 184 59.8
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 2.7e-55 219.2 184 59.8
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 2.7e-55 219.2 184 59.8
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 2.7e-55 219.2 184 59.8
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 3.5e-55 218.8 184 58.2
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 3.5e-55 218.8 183 60.1
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 3.5e-55 218.8 185 56.8
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 4.6e-55 218.4 185 56.2
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 6.0e-55 218.0 184 57.6
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 6.0e-55 218.0 185 56.8
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 6.0e-55 218.0 184 58.2
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 7.9e-55 217.6 185 55.7
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 1.0e-54 217.2 184 59.2
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 1.0e-54 217.2 182 57.7
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 1.0e-54 217.2 183 59.0
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 1.3e-54 216.9 184 59.2
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 1.3e-54 216.9 183 56.8
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 1.8e-54 216.5 185 56.8
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 1.8e-54 216.5 184 57.6
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.8e-54 216.5 185 57.8
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 2.3e-54 216.1 185 56.8
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 2.3e-54 216.1 182 58.2
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 2.3e-54 216.1 185 56.2
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 3.0e-54 215.7 184 57.6
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 3.0e-54 215.7 185 56.8
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 3.9e-54 215.3 184 58.2
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 3.9e-54 215.3 184 57.1
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 5.1e-54 214.9 185 57.8
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 5.1e-54 214.9 184 57.1
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 6.7e-54 214.5 185 57.3
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 6.7e-54 214.5 184 58.2
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 6.7e-54 214.5 185 57.8
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 6.7e-54 214.5 185 55.1
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 6.7e-54 214.5 184 58.2
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 8.7e-54 214.2 184 58.2
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 8.7e-54 214.2 184 58.7
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 8.7e-54 214.2 184 57.6
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 8.7e-54 214.2 184 57.6
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 8.7e-54 214.2 184 57.1
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 8.7e-54 214.2 185 57.3
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 1.1e-53 213.8 184 57.6
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 1.1e-53 213.8 184 57.6
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 1.1e-53 213.8 184 57.6
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.1e-53 213.8 184 57.1
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 1.1e-53 213.8 184 57.6
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 1.1e-53 213.8 184 57.6
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 1.5e-53 213.4 184 57.6
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 1.5e-53 213.4 184 58.2
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 1.5e-53 213.4 184 58.2
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 1.5e-53 213.4 184 58.2
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 1.5e-53 213.4 184 58.2
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 1.5e-53 213.4 184 58.2
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 1.5e-53 213.4 184 58.2
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 1.5e-53 213.4 184 56.5
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 1.5e-53 213.4 185 56.2
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 1.9e-53 213.0 184 57.6
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 1.9e-53 213.0 185 56.2
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 2.5e-53 212.6 185 55.1
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 2.5e-53 212.6 185 55.1
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 2.5e-53 212.6 185 57.3
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 2.5e-53 212.6 184 57.1
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 3.3e-53 212.2 184 54.9
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 3.3e-53 212.2 185 56.2
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 3.3e-53 212.2 184 58.2
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 3.3e-53 212.2 184 58.2
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 3.3e-53 212.2 184 58.2
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 3.3e-53 212.2 185 55.1
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 3.3e-53 212.2 184 56.5
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 4.3e-53 211.8 185 55.7
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 4.3e-53 211.8 184 56.0
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 5.7e-53 211.5 185 55.7
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 5.7e-53 211.5 184 56.5
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 5.7e-53 211.5 184 57.1
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 5.7e-53 211.5 185 55.7
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 7.4e-53 211.1 184 57.6
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 7.4e-53 211.1 182 56.6
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 9.6e-53 210.7 184 55.4
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 9.6e-53 210.7 184 55.4
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 9.6e-53 210.7 185 55.7
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 9.6e-53 210.7 185 56.8
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 9.6e-53 210.7 184 55.4
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 1.3e-52 210.3 184 57.6
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 1.3e-52 210.3 184 57.6
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 1.3e-52 210.3 184 56.5
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.3e-52 210.3 184 56.0
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.1e-52 209.5 184 57.1
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 2.1e-52 209.5 184 56.5
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 2.1e-52 209.5 184 56.0
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 2.1e-52 209.5 185 55.7
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.8e-52 209.1 184 55.4
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 2.8e-52 209.1 185 57.8
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 3.7e-52 208.8 184 54.9
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 3.7e-52 208.8 184 54.9
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 3.7e-52 208.8 183 55.2
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 6.3e-52 208.0 191 54.5
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 8.2e-52 207.6 184 54.9
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 8.2e-52 207.6 184 54.9
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 8.2e-52 207.6 184 54.3
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.1e-51 207.2 183 56.3
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 1.4e-51 206.8 184 54.9
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 1.8e-51 206.5 184 56.0
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 2.4e-51 206.1 184 54.3
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 2.4e-51 206.1 184 55.4
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 2.4e-51 206.1 184 55.4
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 3.1e-51 205.7 184 54.3
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 3.1e-51 205.7 185 53.0
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 3.1e-51 205.7 184 54.3
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 4.1e-51 205.3 184 54.9
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 4.1e-51 205.3 184 54.3
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 5.3e-51 204.9 185 54.6
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 5.3e-51 204.9 184 54.9
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 5.3e-51 204.9 184 54.9
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 9.0e-51 204.1 184 54.3
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 1.2e-50 203.8 184 54.3
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 1.2e-50 203.8 184 55.4
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 2.0e-50 203.0 184 53.8
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 2.6e-50 202.6 184 53.8
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 1.0e-49 200.7 197 54.3
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 2.2e-49 199.5 182 55.5
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 2.2e-49 199.5 182 55.5
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 8.5e-49 197.6 184 53.3
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 4.6e-47 191.8 184 53.8
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 4.6e-47 191.8 184 53.8
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 6.1e-47 191.4 213 48.8
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 1.0e-41 174.1 182 47.3
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 4.2e-40 168.7 147 58.5
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 3.6e-39 165.6 144 54.2
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 7.9e-39 164.5 171 49.1
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 3.3e-37 159.1 129 58.1
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 4.4e-37 158.7 179 46.4
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 6.3e-36 154.8 125 59.2
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 3.2e-32 142.5 125 56.8
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 7.4e-29 131.3 117 53.8
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 6.5e-25 118.2 98 58.2
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 8.0e-23 111.3 107 50.5
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 1.2e-21 107.5 165 37.0
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 3.7e-20 102.4 85 58.8
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 6.3e-12 75.1 115 40.9
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 6.3e-12 75.1 115 40.9
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 5.5e-08 62.0 64 53.1
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 1.2e-07 60.8 64 48.4


User provided reference genes

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