Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 0.0e+00 1328.5 723 100.0
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 2.4e-59 234.6 380 38.2
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 4.6e-58 230.3 389 38.3
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 3.0e-57 227.6 384 38.5
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 3.9e-57 227.3 379 37.5
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 5.1e-57 226.9 431 35.5
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 8.7e-57 226.1 384 37.8
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 8.7e-57 226.1 427 35.8
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 1.1e-56 225.7 381 36.2
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 1.9e-56 224.9 379 36.7
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.3e-56 224.2 431 35.5
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.6e-56 223.4 470 36.0
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 7.3e-56 223.0 385 35.3
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 7.3e-56 223.0 470 35.7
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 7.3e-56 223.0 470 35.7
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 7.3e-56 223.0 431 35.5
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 7.3e-56 223.0 431 35.5
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 9.6e-56 222.6 386 36.8
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 9.6e-56 222.6 386 36.5
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 1.3e-55 222.2 388 35.1
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 1.6e-55 221.9 383 36.6
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.1e-55 221.5 431 35.0
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 2.8e-55 221.1 379 36.4
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 2.8e-55 221.1 423 34.0
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 2.8e-55 221.1 409 35.5
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.6e-55 220.7 470 35.5
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 6.2e-55 219.9 431 35.0
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 8.1e-55 219.5 492 32.9
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.1e-54 219.2 386 36.5
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.4e-54 218.8 431 35.0
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.4e-54 218.8 386 36.8
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 1.4e-54 218.8 400 36.2
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 1.4e-54 218.8 381 36.2
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 1.8e-54 218.4 430 33.7
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 2.4e-54 218.0 383 35.2
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 2.4e-54 218.0 457 33.9
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 2.4e-54 218.0 379 36.4
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 2.4e-54 218.0 388 35.6
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 3.1e-54 217.6 455 35.4
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 4.0e-54 217.2 379 34.6
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 6.9e-54 216.5 468 33.1
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 9.0e-54 216.1 360 36.7
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 2.0e-53 214.9 386 35.8
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 2.0e-53 214.9 360 37.2
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 2.0e-53 214.9 381 35.2
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 2.0e-53 214.9 468 33.8
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 5.8e-53 213.4 378 34.9
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 7.6e-53 213.0 460 32.4
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 9.9e-53 212.6 378 34.9
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.3e-52 212.2 384 35.7
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 1.3e-52 212.2 402 34.8
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.2e-52 211.5 383 35.2
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 2.2e-52 211.5 382 34.8
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.2e-52 211.5 471 35.2
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 4.9e-52 210.3 429 34.3
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 4.9e-52 210.3 389 35.0
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 8.4e-52 209.5 378 34.4
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 8.4e-52 209.5 449 33.9
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.1e-51 209.1 447 33.3
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 1.1e-51 209.1 378 34.4
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 1.9e-51 208.4 380 34.2
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 1.9e-51 208.4 377 34.2
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 2.4e-51 208.0 460 33.3
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 4.2e-51 207.2 422 31.3
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 1.6e-50 205.3 402 35.6
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 2.1e-50 204.9 369 35.5
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.7e-50 204.5 413 34.1
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.0e-49 202.6 368 35.3
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 3.9e-49 200.7 506 31.8
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 9.6e-48 196.1 357 35.6
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 9.6e-48 196.1 413 32.9
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 8.1e-47 193.0 336 36.3
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 8.1e-47 193.0 391 34.3
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.1e-46 192.6 420 33.1
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 4.0e-46 190.7 506 30.8
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 9.0e-46 189.5 424 30.7
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 8.4e-44 183.0 390 34.1
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 6.7e-41 173.3 379 31.4
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.6e-39 168.7 384 31.2
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 4.8e-39 167.2 295 35.9
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 3.1e-38 164.5 309 35.0
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.6e-37 161.4 400 32.5
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 3.4e-37 161.0 432 28.9
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 5.5e-35 153.7 443 30.7
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.2e-34 152.5 380 28.7
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.6e-34 152.1 442 28.1
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 1.6e-34 152.1 432 29.2
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.0e-33 149.4 420 27.9
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 3.3e-32 144.4 221 39.8
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 4.3e-32 144.1 371 29.9
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.7e-32 143.7 363 30.9
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 7.4e-32 143.3 287 35.2
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.6e-31 142.1 372 28.8
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 5.3e-30 137.1 444 27.9
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 5.3e-30 137.1 403 27.8
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 9.0e-30 136.3 404 27.5
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.2e-29 136.0 403 27.8
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.5e-29 135.6 389 29.0
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 1.0e-28 132.9 370 31.4
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.8e-28 131.0 427 28.8
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 5.0e-28 130.6 359 29.0
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 8.5e-28 129.8 402 27.6
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 2.5e-27 128.3 385 30.4
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.2e-27 127.9 379 30.3
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.6e-26 125.6 343 29.7
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 4.6e-26 124.0 403 27.0
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.3e-25 121.7 354 29.1
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.3e-25 121.7 383 28.5
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 3.0e-25 121.3 442 26.9
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 3.0e-25 121.3 424 25.5
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 1.1e-24 119.4 442 26.9
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 2.5e-24 118.2 366 27.6
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 7.4e-24 116.7 440 27.0
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 7.4e-24 116.7 367 27.2
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 7.4e-24 116.7 238 32.8
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 2.2e-23 115.2 369 28.7
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 3.7e-23 114.4 367 26.7
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.2e-23 113.2 372 26.1
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 1.4e-22 112.5 440 27.3
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.4e-22 111.7 367 28.3
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.1e-22 111.3 362 26.0
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.5e-21 109.0 352 28.1
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 2.5e-19 101.7 378 27.8
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.7e-18 98.2 210 33.8
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.1e-18 97.1 289 28.0
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 6.1e-18 97.1 243 30.0
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 1.0e-17 96.3 450 25.6
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.4e-17 95.9 369 25.5
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 3.0e-17 94.7 130 40.8
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 1.3e-15 89.4 175 33.7
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 1.7e-15 89.0 121 41.3
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.7e-15 87.8 234 28.2
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.3e-14 84.0 363 23.4
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 2.6e-13 81.6 99 46.5
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 5.0e-12 77.4 106 38.7
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 5.0e-12 77.4 376 23.4
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-10 72.8 114 36.0
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 1.2e-10 72.8 92 42.4
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 4.7e-10 70.9 101 37.6
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 3.9e-09 67.8 211 28.9
Thhalv10015673m.g Eutrema salsugineum HOM05D003798 ORTHO05D023659 2.2e-07 62.0 328 22.9
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 1.8e-06 58.9 134 30.6
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 9.1e-06 56.6 101 30.7


User provided reference genes

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