Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 3.2e-155 552.0 334 100.0
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 1.5e-56 224.2 333 46.8
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 1.1e-54 218.0 325 42.5
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 9.2e-54 214.9 325 41.5
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 4.6e-53 212.6 325 45.5
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 7.8e-53 211.8 325 42.5
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.3e-52 211.1 325 42.5
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.3e-52 211.1 325 42.5
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 2.3e-52 210.3 325 44.6
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 3.0e-52 209.9 325 41.2
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 3.9e-52 209.5 323 40.9
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 5.1e-52 209.1 316 41.1
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 5.1e-52 209.1 325 40.9
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 6.6e-52 208.8 323 40.6
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 6.6e-52 208.8 326 43.6
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 8.6e-52 208.4 325 41.8
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 1.5e-51 207.6 323 40.9
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 2.5e-51 206.8 323 41.8
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 2.5e-51 206.8 325 41.8
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 3.3e-51 206.5 316 45.6
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 4.3e-51 206.1 325 41.8
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 4.3e-51 206.1 323 39.9
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 4.3e-51 206.1 325 41.8
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 5.6e-51 205.7 325 45.5
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 7.3e-51 205.3 316 41.8
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 9.6e-51 204.9 323 41.8
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 9.6e-51 204.9 324 46.0
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 9.6e-51 204.9 316 45.3
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.2e-50 204.5 325 41.2
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 1.2e-50 204.5 324 45.4
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 2.1e-50 203.8 323 41.5
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 2.1e-50 203.8 323 40.2
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 2.8e-50 203.4 325 41.8
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 3.6e-50 203.0 316 44.3
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 6.2e-50 202.2 325 42.2
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 6.2e-50 202.2 316 48.4
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 8.1e-50 201.8 325 44.6
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 8.1e-50 201.8 316 40.2
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 8.1e-50 201.8 323 40.9
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 8.1e-50 201.8 325 46.5
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 8.1e-50 201.8 325 47.7
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 1.1e-49 201.4 325 41.8
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 1.1e-49 201.4 325 44.3
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 1.1e-49 201.4 325 43.1
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 1.1e-49 201.4 325 41.8
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 1.4e-49 201.1 325 46.2
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 1.4e-49 201.1 323 40.2
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 1.4e-49 201.1 323 39.3
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 2.4e-49 200.3 316 40.5
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 2.4e-49 200.3 327 41.0
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 4.0e-49 199.5 326 42.6
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 5.2e-49 199.1 316 44.0
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 5.2e-49 199.1 323 40.2
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 5.2e-49 199.1 323 40.2
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 5.2e-49 199.1 316 40.2
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 6.9e-49 198.7 321 44.5
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 8.9e-49 198.4 316 44.3
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 8.9e-49 198.4 323 39.3
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 8.9e-49 198.4 315 43.8
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 1.2e-48 198.0 319 39.2
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 1.2e-48 198.0 316 44.6
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 1.5e-48 197.6 316 45.3
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 1.5e-48 197.6 316 44.6
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.5e-48 197.6 319 40.4
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 2.6e-48 196.8 327 41.3
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 3.4e-48 196.4 321 43.9
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 4.4e-48 196.1 324 44.1
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 4.4e-48 196.1 316 44.9
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 4.4e-48 196.1 333 43.2
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 7.6e-48 195.3 325 47.4
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 7.6e-48 195.3 324 44.1
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 9.9e-48 194.9 327 43.7
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 9.9e-48 194.9 335 41.2
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 9.9e-48 194.9 324 43.8
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 1.7e-47 194.1 325 43.7
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 1.7e-47 194.1 316 44.0
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.7e-47 194.1 315 39.4
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.7e-47 194.1 325 44.0
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 2.2e-47 193.7 325 40.0
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 2.9e-47 193.4 325 43.4
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 3.8e-47 193.0 332 43.4
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 8.4e-47 191.8 316 43.7
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 1.1e-46 191.4 316 43.4
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 1.4e-46 191.0 315 43.2
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 1.4e-46 191.0 322 48.4
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 1.9e-46 190.7 323 39.9
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 2.4e-46 190.3 324 39.5
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 3.2e-46 189.9 314 43.3
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 3.2e-46 189.9 319 43.3
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 3.2e-46 189.9 323 43.7
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 5.4e-46 189.1 312 46.2
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 5.4e-46 189.1 316 43.0
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 5.4e-46 189.1 325 43.1
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 7.1e-46 188.7 315 43.2
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 9.3e-46 188.3 312 46.5
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 9.3e-46 188.3 316 42.7
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 9.3e-46 188.3 315 43.2
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 9.3e-46 188.3 323 44.0
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 9.3e-46 188.3 323 39.3
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 2.1e-45 187.2 312 45.2
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.1e-45 187.2 332 42.8
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 3.5e-45 186.4 317 43.2
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 3.5e-45 186.4 317 43.5
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 3.5e-45 186.4 317 43.2
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 4.6e-45 186.0 335 42.1
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 4.6e-45 186.0 323 38.7
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 6.0e-45 185.7 324 47.8
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 1.0e-44 184.9 314 42.4
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 5.1e-44 182.6 324 46.9
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 5.1e-44 182.6 316 43.0
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 5.1e-44 182.6 316 43.0
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 5.1e-44 182.6 323 38.4
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 8.7e-44 181.8 314 42.0
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 8.7e-44 181.8 323 39.0
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 8.7e-44 181.8 323 42.1
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 1.9e-43 180.6 316 42.4
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 7.3e-43 178.7 312 42.9
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 9.0e-41 171.8 329 47.1
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 1.2e-40 171.4 325 41.2
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 2.6e-40 170.2 345 37.7
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.2e-37 161.4 326 39.9
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 2.3e-36 157.1 327 37.0
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.9e-35 154.1 310 35.5
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 8.1e-34 148.7 307 33.9
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 1.8e-33 147.5 261 36.8
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 3.1e-33 146.7 243 42.4
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 1.2e-32 144.8 261 37.5
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.2e-32 144.8 324 42.9
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 1.9e-27 127.5 262 40.5
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 2.8e-26 123.6 212 42.9
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 6.2e-26 122.5 242 44.2
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 7.4e-19 99.0 249 33.3
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 3.1e-17 93.6 121 42.1
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 1.5e-16 91.3 88 54.5
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 4.5e-16 89.7 86 58.1
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 8.5e-15 85.5 217 31.3
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 5.5e-14 82.8 121 39.7
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 2.3e-12 77.4 140 39.3
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 5.7e-11 72.8 71 56.3
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 9.1e-09 65.5 56 60.7
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 4.5e-08 63.2 124 33.9
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.7e-07 61.2 138 27.5
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 1.7e-07 61.2 95 40.0
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 1.1e-06 58.5 72 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.4e-06 58.2 93 41.9
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 3.2e-06 57.0 239 27.6


User provided reference genes

Program Settings