Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g45943 Chara braunii HOM05D006013 ORTHO05D007383 8.2e-270 933.3 540 100.0
Pp3c3_4160 Physcomitrium patens HOM05D006013 ORTHO05D007383 8.5e-57 225.7 251 45.4
THA.LOC104820775 Tarenaya hassleriana HOM05D006013 ORTHO05D007383 4.2e-56 223.4 272 46.3
Ciclev10021129m.g Citrus clementina HOM05D006013 ORTHO05D007383 3.9e-54 216.9 248 46.8
AUR62032699 Chenopodium quinoa HOM05D006013 ORTHO05D007383 6.7e-54 216.1 261 46.0
Duzib177G0997 Durio zibethinus HOM05D006013 ORTHO05D007383 6.7e-54 216.1 262 46.2
AUR62032048 Chenopodium quinoa HOM05D006013 ORTHO05D007383 8.8e-54 215.7 273 44.7
Sc25g0004990 Simmondsia chinensis HOM05D006013 ORTHO05D007383 8.8e-54 215.7 251 46.2
Manes.09G140900 Manihot esculenta HOM05D006013 ORTHO05D007383 2.5e-53 214.2 251 47.4
TAR623G1171 Trochodendron aralioides HOM05D006013 ORTHO05D007383 3.3e-53 213.8 251 46.2
Cpa.g.sc51.125 Carica papaya HOM05D006013 ORTHO05D007383 5.7e-53 213.0 251 46.2
FAN26G3022 Fragaria x ananassa HOM05D006013 ORTHO05D007383 1.3e-52 211.8 267 43.8
Thecc.05G250300 Theobroma cacao HOM05D006013 ORTHO05D007383 1.3e-52 211.8 251 46.6
Prupe.7G004600 Prunus persica HOM05D006013 ORTHO05D007383 1.7e-52 211.5 252 47.6
RcHm_v2.0_Chr3g0497041 Rosa chinensis HOM05D006013 ORTHO05D007383 1.7e-52 211.5 251 45.8
Atru.chr2.1392 Acer truncatum HOM05D006013 ORTHO05D007383 2.2e-52 211.1 251 46.2
Lsat_1_v5_gn_6_37360 Lactuca sativa HOM05D006013 ORTHO05D007383 2.2e-52 211.1 263 43.7
Potri.019G035200 Populus trichocarpa HOM05D006013 ORTHO05D007383 2.2e-52 211.1 251 47.0
MBI01_g13088_MAGBIO Magnolia biondii HOM05D006013 ORTHO05D007383 8.2e-52 209.1 262 43.5
MD14G1002900 Malus domestica HOM05D006013 ORTHO05D007383 8.2e-52 209.1 251 46.2
PGR142G0352 Punica granatum HOM05D006013 ORTHO05D007383 1.1e-51 208.8 251 45.0
FvH4_1g28200 Fragaria vesca HOM05D006013 ORTHO05D007383 1.4e-51 208.4 267 43.4
Ca_08269_v3 Cicer arietinum L. HOM05D006013 ORTHO05D007383 1.8e-51 208.0 255 43.5
TWI60G0250 Tripterygium wilfordii HOM05D006013 ORTHO05D007383 1.8e-51 208.0 250 44.8
AL3G13780 Arabidopsis lyrata HOM05D006013 ORTHO05D007383 2.4e-51 207.6 240 45.4
arahy.Tifrunner.gnm1.ann1.779YCA Arachis hypogaea HOM05D006013 ORTHO05D007383 2.4e-51 207.6 251 43.8
FAN28G1937 Fragaria x ananassa HOM05D006013 ORTHO05D007383 2.4e-51 207.6 267 43.1
EL10Ac3g06825 Beta vulgaris HOM05D006013 ORTHO05D007383 3.1e-51 207.2 257 44.7
CARHR078010 Cardamine hirsuta HOM05D006013 ORTHO05D007383 3.1e-51 207.2 240 45.4
Aa31LG5G14470 Aethionema arabicum HOM05D006013 ORTHO05D007383 4.1e-51 206.8 256 44.5
Medtr7g085670 Medicago truncatula HOM05D006013 ORTHO05D007383 4.1e-51 206.8 251 43.4
arahy.Tifrunner.gnm1.ann1.3D4EN7 Arachis hypogaea HOM05D006013 ORTHO05D007383 5.3e-51 206.5 251 43.8
AT3G03890 Arabidopsis thaliana HOM05D006013 ORTHO05D007383 9.1e-51 205.7 240 46.2
Eucgr.K01500 Eucalyptus grandis HOM05D006013 ORTHO05D007383 9.1e-51 205.7 255 45.9
Gohir.A11G235800 Gossypium hirsutum HOM05D006013 ORTHO05D007383 9.1e-51 205.7 251 45.0
CiPaw.09G002300 Carya illinoinensis HOM05D006013 ORTHO05D007383 1.5e-50 204.9 260 43.8
Lj1g0017420 Lotus japonicus HOM05D006013 ORTHO05D007383 2.0e-50 204.5 251 44.2
CSS0008476 Camellia sinensis var. sinensis HOM05D006013 ORTHO05D007383 3.4e-50 203.8 251 45.0
A05p43500 Brassica napus HOM05D006013 ORTHO05D007383 4.5e-50 203.4 248 44.4
Sp3g02860 Schrenkiella parvula HOM05D006013 ORTHO05D007383 4.5e-50 203.4 240 45.8
BcaC05g30245 Brassica carinata HOM05D006013 ORTHO05D007383 5.9e-50 203.0 262 42.4
BcaC05g30290 Brassica carinata HOM05D006013 ORTHO05D007383 5.9e-50 203.0 248 43.5
BraA05t23090Z Brassica rapa HOM05D006013 ORTHO05D007383 5.9e-50 203.0 262 43.1
CANSAT78G0686 Cannabis sativa HOM05D006013 ORTHO05D007383 5.9e-50 203.0 253 44.3
ClCG04G005340 Citrullus lanatus HOM05D006013 ORTHO05D007383 5.9e-50 203.0 248 45.6
Cc06_g23030 Coffea canephora HOM05D006013 ORTHO05D007383 5.9e-50 203.0 251 44.6
CsaV3_4G013250 Cucumis sativus L. HOM05D006013 ORTHO05D007383 5.9e-50 203.0 248 46.0
Duzib106G1826 Durio zibethinus HOM05D006013 ORTHO05D007383 5.9e-50 203.0 251 43.8
Glyma.19G112500 Glycine max HOM05D006013 ORTHO05D007383 5.9e-50 203.0 251 43.4
VMungo1383G3468 Vigna mungo HOM05D006013 ORTHO05D007383 1.0e-49 202.2 251 43.0
Migut.K00008 Erythranthe guttata HOM05D006013 ORTHO05D007383 1.3e-49 201.8 261 44.1
SGA_v2.0_scaffold94G28403 Striga asiatica HOM05D006013 ORTHO05D007383 2.2e-49 201.1 256 43.0
Carub.0003s0312 Capsella rubella HOM05D006013 ORTHO05D007383 2.9e-49 200.7 262 42.4
COL.COLO4_36081 Corchorus olitorius HOM05D006013 ORTHO05D007383 2.9e-49 200.7 251 44.6
vmacro09136 Vaccinium macrocarpon HOM05D006013 ORTHO05D007383 2.9e-49 200.7 251 45.4
Gohir.D11G246700 Gossypium hirsutum HOM05D006013 ORTHO05D007383 3.8e-49 200.3 251 44.2
GSVIVG01033407001 Vitis vinifera HOM05D006013 ORTHO05D007383 3.8e-49 200.3 251 43.0
MELO3C008805.2 Cucumis melo HOM05D006013 ORTHO05D007383 5.0e-49 199.9 248 45.2
DCAR_013685 Daucus carota HOM05D006013 ORTHO05D007383 5.0e-49 199.9 263 42.2
SalBow1G1671 Salvia bowleyana HOM05D006013 ORTHO05D007383 6.5e-49 199.5 262 41.6
ATR0737G078 Amborella trichopoda HOM05D006013 ORTHO05D007383 1.4e-48 198.4 244 43.4
Os07g0573800 Oryza sativa ssp. japonica HOM05D006013 ORTHO05D007383 1.4e-48 198.4 251 43.4
Sed0009892 Sechium edule HOM05D006013 ORTHO05D007383 1.4e-48 198.4 256 43.8
Cfa016446 Carpinus fangiana HOM05D006013 ORTHO05D007383 1.9e-48 198.0 257 42.8
HanXRQChr02g0054551 Helianthus annuus HOM05D006013 ORTHO05D007383 2.5e-48 197.6 251 42.6
Lalb_Chr14g0364531 Lupinus albus HOM05D006013 ORTHO05D007383 2.5e-48 197.6 251 43.4
Sabra19G0046900 Salix brachista HOM05D006013 ORTHO05D007383 2.5e-48 197.6 258 44.6
Actinidia17301 Actinidia chinensis HOM05D006013 ORTHO05D007383 3.2e-48 197.2 251 43.4
Phvul.001G111200 Phaseolus vulgaris HOM05D006013 ORTHO05D007383 3.2e-48 197.2 251 42.2
Potri.013G057700 Populus trichocarpa HOM05D006013 ORTHO05D007383 4.2e-48 196.8 251 44.2
SalBow6G2467 Salvia bowleyana HOM05D006013 ORTHO05D007383 4.2e-48 196.8 256 41.8
Nn7g35862 Nelumbo nucifera HOM05D006013 ORTHO05D007383 5.5e-48 196.4 274 41.6
PSO384G2178 Papaver somniferum HOM05D006013 ORTHO05D007383 5.5e-48 196.4 273 39.9
BcaC05g29895 Brassica carinata HOM05D006013 ORTHO05D007383 7.2e-48 196.1 262 42.0
BolC5t34969H Brassica oleracea HOM05D006013 ORTHO05D007383 7.2e-48 196.1 248 43.1
Haze_19424 Corylus avellana HOM05D006013 ORTHO05D007383 7.2e-48 196.1 260 41.9
Zm00001eb325150 Zea mays HOM05D006013 ORTHO05D007383 9.4e-48 195.7 258 42.2
Thhalv10021141m.g Eutrema salsugineum HOM05D006013 ORTHO05D007383 3.6e-47 193.7 240 43.8
Hma1.2p1_0152F.1_g067630 Hydrangea macrophylla HOM05D006013 ORTHO05D007383 4.7e-47 193.4 251 42.2
HPP92_018481 Vanilla planifolia HOM05D006013 ORTHO05D007383 6.1e-47 193.0 250 43.2
Sabra13G0051400 Salix brachista HOM05D006013 ORTHO05D007383 1.0e-46 192.2 263 42.6
MSTRG.26068 Avicennia marina HOM05D006013 ORTHO05D007383 3.0e-46 190.7 269 39.4
PSO339G6099 Papaver somniferum HOM05D006013 ORTHO05D007383 3.0e-46 190.7 251 39.8
Aqoxy2G00451 Aquilegia oxysepala HOM05D006013 ORTHO05D007383 3.9e-46 190.3 273 39.9
MD12G1004200 Malus domestica HOM05D006013 ORTHO05D007383 6.7e-46 189.5 250 44.0
TPR.G5910 Trifolium pratense HOM05D006013 ORTHO05D007383 6.7e-46 189.5 251 41.4
QL07p018334 Quercus lobata HOM05D006013 ORTHO05D007383 1.5e-45 188.3 245 43.3
Hund24832 Selenicereus undatus HOM05D006013 ORTHO05D007383 2.0e-45 188.0 251 43.4
Mapoly0041s0079 Marchantia polymorpha HOM05D006013 ORTHO05D007383 1.3e-44 185.3 251 42.2
Solyc03g063240.3 Solanum lycopersicum HOM05D006013 ORTHO05D007383 2.2e-44 184.5 263 40.7
Dinv37019 Davidia involucrata HOM05D006013 ORTHO05D007383 3.7e-44 183.7 220 45.0
HanXRQChr03g0090471 Helianthus annuus HOM05D006013 ORTHO05D007383 4.8e-44 183.3 262 38.5
PGSC0003DMG400033345 Solanum tuberosum HOM05D006013 ORTHO05D007383 3.1e-43 180.6 263 39.9
Oeu046747.1 Olea europaea HOM05D006013 ORTHO05D007383 9.1e-43 179.1 210 46.2
Peaxi162Scf00463g00021 Petunia axillaris HOM05D006013 ORTHO05D007383 9.1e-43 179.1 271 39.5
Sabra19G0043600 Salix brachista HOM05D006013 ORTHO05D007383 1.2e-42 178.7 261 41.4
SGA_v2.0_scaffold69G23026 Striga asiatica HOM05D006013 ORTHO05D007383 1.5e-42 178.3 251 39.8
ECA248G0640 Erigeron canadensis HOM05D006013 ORTHO05D007383 2.0e-42 177.9 263 38.8
Manes.08G144700 Manihot esculenta HOM05D006013 ORTHO05D007383 2.0e-42 177.9 251 40.6
PRCOL_00004085 Prasinoderma coloniale HOM05D006013 ORTHO05D007383 2.6e-42 177.6 254 40.2
Nitab4.5_0000394g0050 Nicotiana tabacum HOM05D006013 ORTHO05D007383 4.5e-42 176.8 273 39.6
ECA233G0564 Erigeron canadensis HOM05D006013 ORTHO05D007383 1.0e-41 175.6 204 46.1
Rhsim04G0092500 Rhododendron simsii HOM05D006013 ORTHO05D007383 1.3e-41 175.3 303 36.0
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 2.2e-41 174.5 238 41.6
unitig_46.g18447 Utricularia gibba HOM05D006013 ORTHO05D007383 3.8e-41 173.7 242 38.8
Migut.J01884 Erythranthe guttata HOM05D006013 ORTHO05D007383 5.0e-41 173.3 251 38.2
Nitab4.5_0000626g0030 Nicotiana tabacum HOM05D006013 ORTHO05D007383 6.5e-41 172.9 255 39.6
Hund19233 Selenicereus undatus HOM05D006013 ORTHO05D007383 1.9e-40 171.4 309 35.0
Glyma.16G040700 Glycine max HOM05D006013 ORTHO05D007383 1.2e-39 168.7 202 43.1
Gorai.007G262600 Gossypium raimondii HOM05D006013 ORTHO05D007383 2.7e-39 167.5 202 45.0
MD12G1004000 Malus domestica HOM05D006013 ORTHO05D007383 8.0e-39 166.0 242 41.3
Lsat_1_v5_gn_1_59740 Lactuca sativa HOM05D006013 ORTHO05D007383 2.0e-37 161.4 263 35.0
CDE05G2375 Ceratophyllum demersum HOM05D006013 ORTHO05D007383 1.7e-36 158.3 202 42.1
Sopen03g015800 Solanum pennellii HOM05D006013 ORTHO05D007383 1.7e-36 158.3 204 42.6
SMO358G0221 Selaginella moellendorffii HOM05D006013 ORTHO05D007383 1.4e-35 155.2 238 36.6
MCO02G120 Micromonas commoda HOM05D006013 ORTHO05D007383 5.3e-35 153.3 251 37.5
Cre02.g098250 Chlamydomonas reinhardtii HOM05D006013 ORTHO05D007383 1.1e-32 145.6 258 35.7
Hma1.2p1_0152F.1_g067650 Hydrangea macrophylla HOM05D006013 ORTHO05D007383 5.5e-32 143.3 162 45.1
HPP92_018470 Vanilla planifolia HOM05D006013 ORTHO05D007383 2.2e-28 131.3 147 45.6
SEGI_12732 Sequoiadendron giganteum HOM05D006013 ORTHO05D007383 1.3e-20 105.5 125 43.2
AagrBONN_evm.TU.Sc2ySwM_228.4283 Anthoceros agrestis HOM05D006013 ORTHO05D007383 1.2e-15 89.0 111 42.3
Pp3c7_5080 Physcomitrium patens HOM05D005491 ORTHO05D006973 1.8e-14 85.1 265 26.8
SMO364G0508 Selaginella moellendorffii HOM05D003731 ORTHO05D004429 4.4e-13 80.5 230 27.8
BcaB06g26184 Brassica carinata HOM05D003731 ORTHO05D004429 5.7e-13 80.1 226 30.1
BcaC05g28253 Brassica carinata HOM05D003731 ORTHO05D004429 5.7e-13 80.1 226 30.1
BraA05t21647Z Brassica rapa HOM05D003731 ORTHO05D004429 5.7e-13 80.1 227 30.0
A05p27580 Brassica napus HOM05D003731 ORTHO05D004429 7.5e-13 79.7 227 30.0
C05p42680 Brassica napus HOM05D003731 ORTHO05D004429 7.5e-13 79.7 227 30.0
BolC5t32990H Brassica oleracea HOM05D003731 ORTHO05D004429 7.5e-13 79.7 227 30.0
Os02g0148400 Oryza sativa ssp. japonica HOM05D003731 ORTHO05D004429 1.3e-12 79.0 227 29.1
Cre12.g520200 Chlamydomonas reinhardtii HOM05D003731 ORTHO05D004429 1.1e-11 75.9 264 27.3
AT3G21140 Arabidopsis thaliana HOM05D003731 ORTHO05D004429 2.4e-11 74.7 221 29.0
Mapoly0005s0279 Marchantia polymorpha HOM05D005491 ORTHO05D006973 2.4e-11 74.7 243 24.7
Pp3c19_5780 Physcomitrium patens HOM05D003731 ORTHO05D004429 4.1e-11 73.9 214 29.9
Zm00001eb035800 Zea mays HOM05D003731 ORTHO05D004429 1.2e-10 72.4 230 28.7
Pp3c18_21250 Physcomitrium patens HOM05D003731 ORTHO05D004429 2.0e-10 71.6 224 29.9
CAN.G323.2 Capsicum annuum HOM05D006013 ORTHO05D007383 5.9e-10 70.1 117 35.0
Lj1A1136T62 Lonicera japonica HOM05D006013 ORTHO05D007383 5.9e-10 70.1 100 37.0
AagrBONN_evm.TU.Sc2ySwM_368.2001 Anthoceros agrestis HOM05D005491 ORTHO05D006973 1.0e-09 69.3 243 24.7
PGR142G2967 Punica granatum HOM05D006013 ORTHO05D007383 1.0e-09 69.3 83 39.8
Aa31LG8G7840 Aethionema arabicum HOM05D003731 ORTHO05D004429 1.3e-09 68.9 241 26.6
Gorai.009G118600 Gossypium raimondii HOM05D005491 ORTHO05D006973 8.6e-09 66.2 244 25.0
Cc04_g00370 Coffea canephora HOM05D005491 ORTHO05D006973 1.1e-08 65.9 243 25.9
Sc15g0000930 Simmondsia chinensis HOM05D005491 ORTHO05D006973 2.5e-08 64.7 244 23.0
Gohir.D05G114500 Gossypium hirsutum HOM05D005491 ORTHO05D006973 4.3e-08 63.9 244 24.6
vmacro17061 Vaccinium macrocarpon HOM05D005491 ORTHO05D006973 7.3e-08 63.2 244 25.4
Ciclev10026115m.g Citrus clementina HOM05D005491 ORTHO05D006973 9.5e-08 62.8 248 25.4
PGR102G1295 Punica granatum HOM05D005491 ORTHO05D006973 9.5e-08 62.8 244 23.8
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 9.5e-08 62.8 236 22.9
Oeu023761.1 Olea europaea HOM05D005491 ORTHO05D006973 1.2e-07 62.4 214 25.7
Hund18611 Selenicereus undatus HOM05D005491 ORTHO05D006973 1.2e-07 62.4 244 23.8
Ah.15g094670 Amaranthus hybridus HOM05D005491 ORTHO05D006973 1.6e-07 62.0 244 22.1
MD09G1158800 Malus domestica HOM05D005491 ORTHO05D006973 2.1e-07 61.6 244 23.8
Dinv20356 Davidia involucrata HOM05D005491 ORTHO05D006973 2.8e-07 61.2 244 25.0
FAN19G2205 Fragaria x ananassa HOM05D006013 ORTHO05D007383 2.8e-07 61.2 86 39.5
Psat6g151880 Pisum sativum HOM05D006013 ORTHO05D007383 2.8e-07 61.2 69 44.9
Sed0027406 Sechium edule HOM05D005491 ORTHO05D006973 3.6e-07 60.8 246 22.8
Aqoxy7G03200 Aquilegia oxysepala HOM05D005491 ORTHO05D006973 4.7e-07 60.5 246 23.6
AUR62025582 Chenopodium quinoa HOM05D005491 ORTHO05D006973 4.7e-07 60.5 250 22.8
MELO3C006296.2 Cucumis melo HOM05D005491 ORTHO05D006973 8.0e-07 59.7 246 22.0
Thhalv10021146m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 8.0e-07 59.7 244 25.0
Thhalv10021148m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 8.0e-07 59.7 244 25.0
Lalb_Chr04g0264721 Lupinus albus HOM05D005491 ORTHO05D006973 8.0e-07 59.7 247 24.7
A01p33690 Brassica napus HOM05D005491 ORTHO05D006973 1.4e-06 58.9 246 26.0
BraA01t03481Z Brassica rapa HOM05D005491 ORTHO05D006973 1.4e-06 58.9 246 26.0
BraA05t21640Z Brassica rapa HOM05D005491 ORTHO05D006973 1.4e-06 58.9 246 26.0
CANSAT01G1753 Cannabis sativa HOM05D005491 ORTHO05D006973 1.4e-06 58.9 244 21.3
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 1.4e-06 58.9 224 23.7
GSVIVG01016137001 Vitis vinifera HOM05D005491 ORTHO05D006973 1.4e-06 58.9 244 21.7
SGA_v2.0_scaffold4G02103 Striga asiatica HOM05D005491 ORTHO05D006973 1.8e-06 58.5 214 26.2
Atru.chr1.2698 Acer truncatum HOM05D005491 ORTHO05D006973 2.3e-06 58.2 248 24.2
AL3G35200 Arabidopsis lyrata HOM05D005491 ORTHO05D006973 2.3e-06 58.2 247 27.1
EL10Ac7g18224 Beta vulgaris HOM05D005491 ORTHO05D006973 2.3e-06 58.2 262 22.9
BcaB06g26202 Brassica carinata HOM05D005491 ORTHO05D006973 2.3e-06 58.2 247 27.5
Eucgr.F04012 Eucalyptus grandis HOM05D005491 ORTHO05D006973 2.3e-06 58.2 244 23.4
Lj6C21T3 Lonicera japonica HOM05D005491 ORTHO05D006973 2.3e-06 58.2 281 22.1
MCO09G402 Micromonas commoda HOM05D003731 ORTHO05D004429 2.3e-06 58.2 265 26.0
AT3G21200 Arabidopsis thaliana HOM05D005491 ORTHO05D006973 3.1e-06 57.8 247 26.7
A05p27490 Brassica napus HOM05D005491 ORTHO05D006973 4.0e-06 57.4 246 25.6
ATR0580G202 Amborella trichopoda HOM05D005491 ORTHO05D006973 5.2e-06 57.0 220 24.5
BcaC05g28263 Brassica carinata HOM05D005491 ORTHO05D006973 5.2e-06 57.0 246 25.6
C05p42580 Brassica napus HOM05D005491 ORTHO05D006973 5.2e-06 57.0 246 25.6
Potri.010G250200 Populus trichocarpa HOM05D005491 ORTHO05D006973 5.2e-06 57.0 244 24.6
Rhsim12G0214300 Rhododendron simsii HOM05D005491 ORTHO05D006973 5.2e-06 57.0 244 23.8
Lj6A3G42 Lonicera japonica HOM05D005491 ORTHO05D006973 6.8e-06 56.6 281 22.4
SalBow7G0632 Salvia bowleyana HOM05D005491 ORTHO05D006973 6.8e-06 56.6 244 24.2
CsaV3_3G010780 Cucumis sativus L. HOM05D005491 ORTHO05D006973 8.9e-06 56.2 246 21.5


User provided reference genes

Program Settings