Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 4.5e-73 278.1 169 100.0
CBR_g36252 Chara braunii HOM05D000019 ORTHO05D000002 5.9e-49 198.0 299 47.8
CBR_g38886 Chara braunii HOM05D010919 ORTHO05D007026 2.7e-46 189.1 109 94.5
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 7.3e-15 84.7 176 40.9
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 1.2e-12 77.4 179 44.1
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 1.5e-12 77.0 181 45.9
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 2.0e-12 76.6 186 43.5
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 2.6e-12 76.3 188 37.2
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 7.5e-12 74.7 192 40.6
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 9.9e-12 74.3 175 41.7
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 9.9e-12 74.3 182 34.6
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 1.3e-11 73.9 178 40.4
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 1.3e-11 73.9 183 39.9
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 1.3e-11 73.9 180 43.3
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 1.7e-11 73.6 172 34.9
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 2.2e-11 73.2 179 43.0
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 2.2e-11 73.2 188 43.1
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 2.9e-11 72.8 191 40.3
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 3.7e-11 72.4 198 38.9
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 3.7e-11 72.4 187 41.2
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 4.9e-11 72.0 186 44.6
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 6.4e-11 71.6 174 36.2
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 6.4e-11 71.6 177 44.1
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 6.4e-11 71.6 183 44.8
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.4e-10 70.5 178 42.7
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 1.9e-10 70.1 188 42.6
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 1.9e-10 70.1 172 41.9
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 2.4e-10 69.7 184 40.8
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 2.4e-10 69.7 184 42.9
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 3.2e-10 69.3 183 41.5
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 3.2e-10 69.3 175 42.9
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 3.2e-10 69.3 171 37.4
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 4.1e-10 68.9 172 40.1
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 4.1e-10 68.9 176 43.8
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 5.4e-10 68.6 186 36.0
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 5.4e-10 68.6 184 41.3
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 5.4e-10 68.6 179 45.3
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 7.1e-10 68.2 185 42.2
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.2e-09 67.4 186 44.6
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.2e-09 67.4 187 41.7
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 1.2e-09 67.4 191 41.9
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 1.2e-09 67.4 181 44.2
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 1.2e-09 67.4 191 42.9
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 1.2e-09 67.4 178 41.6
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 1.6e-09 67.0 193 40.4
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.6e-09 67.0 183 42.6
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 2.1e-09 66.6 175 42.3
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 2.1e-09 66.6 184 40.2
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 2.7e-09 66.2 178 41.0
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 4.6e-09 65.5 183 43.2
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 1.0e-08 64.3 186 38.2
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 1.0e-08 64.3 180 40.0
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 1.0e-08 64.3 179 39.7
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 1.3e-08 63.9 183 43.2
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 1.3e-08 63.9 191 41.4
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.3e-08 63.2 179 39.7
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.3e-08 63.2 178 38.2
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 2.3e-08 63.2 178 41.0
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 3.0e-08 62.8 179 39.1
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 3.9e-08 62.4 181 42.5
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 3.9e-08 62.4 190 40.0
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 5.1e-08 62.0 179 43.0
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 5.1e-08 62.0 189 40.7
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 6.6e-08 61.6 103 45.6
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 6.6e-08 61.6 178 38.2
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 8.6e-08 61.2 174 42.5
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 8.6e-08 61.2 182 40.7
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 1.1e-07 60.8 184 42.4
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 1.1e-07 60.8 188 43.1
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.1e-07 60.8 179 42.5
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 1.1e-07 60.8 142 43.0
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.5e-07 59.7 103 44.7
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 3.3e-07 59.3 182 44.0
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 3.3e-07 59.3 178 29.8
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 4.3e-07 58.9 181 44.2
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 9.5e-07 57.8 185 41.1
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 1.2e-06 57.4 181 43.6
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 1.2e-06 57.4 181 43.6
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 1.2e-06 57.4 181 43.6
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.6e-06 57.0 186 41.4
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 2.8e-06 56.2 184 41.8
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 3.6e-06 55.8 193 35.2
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 6.2e-06 55.1 184 41.3
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 8.1e-06 54.7 186 40.9


User provided reference genes

Program Settings