Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 1.3e-105 386.3 194 100.0
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 8.4e-15 84.7 66 57.6
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 8.4e-15 84.7 66 57.6
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 8.4e-15 84.7 65 58.5
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 8.4e-15 84.7 66 57.6
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 2.4e-14 83.2 66 56.1
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 4.2e-14 82.4 76 51.3
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 7.1e-14 81.6 75 50.7
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 7.1e-14 81.6 66 54.5
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 9.3e-14 81.3 66 56.1
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 9.3e-14 81.3 66 56.1
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 9.3e-14 81.3 66 56.1
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 1.2e-13 80.9 66 56.1
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 1.2e-13 80.9 66 54.5
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 1.2e-13 80.9 66 54.5
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 1.2e-13 80.9 65 58.5
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 2.1e-13 80.1 65 55.4
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 2.1e-13 80.1 104 45.2
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 2.7e-13 79.7 65 53.8
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 2.7e-13 79.7 66 53.0
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 3.5e-13 79.3 66 51.5
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 3.5e-13 79.3 65 53.8
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 3.5e-13 79.3 66 53.0
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 3.5e-13 79.3 66 51.5
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 4.6e-13 79.0 66 51.5
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 4.6e-13 79.0 100 42.0
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 4.6e-13 79.0 61 59.0
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 6.0e-13 78.6 65 53.8
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 6.0e-13 78.6 64 57.8
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 6.0e-13 78.6 66 51.5
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 6.0e-13 78.6 97 45.4
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 6.0e-13 78.6 97 45.4
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 6.0e-13 78.6 97 45.4
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 6.0e-13 78.6 96 42.7
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 7.8e-13 78.2 99 41.4
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 7.8e-13 78.2 66 50.0
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 7.8e-13 78.2 97 42.3
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 7.8e-13 78.2 97 44.3
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 1.0e-12 77.8 66 51.5
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 1.0e-12 77.8 66 50.0
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 1.0e-12 77.8 76 48.7
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 1.0e-12 77.8 97 44.3
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 1.0e-12 77.8 96 45.8
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 1.0e-12 77.8 66 53.0
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 1.0e-12 77.8 98 41.8
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 1.3e-12 77.4 66 54.5
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 1.3e-12 77.4 97 42.3
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 1.3e-12 77.4 96 41.7
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 1.3e-12 77.4 66 51.5
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 1.3e-12 77.4 66 54.5
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 1.3e-12 77.4 65 53.8
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 1.3e-12 77.4 98 43.9
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 1.3e-12 77.4 107 41.1
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 1.3e-12 77.4 65 53.8
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 1.7e-12 77.0 66 51.5
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 1.7e-12 77.0 70 48.6
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 1.7e-12 77.0 65 55.4
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 2.3e-12 76.6 66 50.0
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 2.3e-12 76.6 65 52.3
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 2.3e-12 76.6 65 52.3
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 2.3e-12 76.6 64 51.6
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 3.0e-12 76.3 66 50.0
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 3.0e-12 76.3 65 52.3
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 3.9e-12 75.9 106 41.5
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 3.9e-12 75.9 98 42.9
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 3.9e-12 75.9 66 53.0
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 5.1e-12 75.5 75 46.7
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 5.1e-12 75.5 98 40.8
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 5.1e-12 75.5 97 41.2
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 6.6e-12 75.1 97 41.2
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 6.6e-12 75.1 99 40.4
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 6.6e-12 75.1 63 49.2
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 8.7e-12 74.7 66 48.5
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 8.7e-12 74.7 102 40.2
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 1.5e-11 73.9 63 46.0
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.5e-11 73.9 97 40.2
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.5e-11 73.9 61 50.8
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 1.5e-11 73.9 61 50.8
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 1.9e-11 73.6 63 50.8
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.9e-11 73.6 73 49.3
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.9e-11 73.6 62 50.0
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 2.5e-11 73.2 66 48.5
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 7.3e-11 71.6 66 48.5
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 2.1e-10 70.1 71 46.5
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 2.1e-10 70.1 115 38.3
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 2.1e-10 70.1 71 46.5
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 2.8e-10 69.7 74 44.6
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.8e-10 69.7 95 35.8
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 3.6e-10 69.3 65 47.7
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 4.8e-10 68.9 60 51.7
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 4.8e-10 68.9 66 47.0
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 4.8e-10 68.9 66 48.5
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 6.2e-10 68.6 59 49.2
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 6.2e-10 68.6 66 48.5
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.4e-09 67.4 78 43.6
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.4e-09 67.4 78 43.6
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 1.4e-09 67.4 66 47.0
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 1.8e-09 67.0 100 36.0
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 2.4e-09 66.6 82 40.2
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 3.1e-09 66.2 90 40.0
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 3.1e-09 66.2 90 40.0
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 3.1e-09 66.2 97 40.2
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 3.1e-09 66.2 78 42.3
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 4.0e-09 65.9 78 41.0
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 4.0e-09 65.9 82 40.2
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 9.0e-09 64.7 106 35.8
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 1.2e-08 64.3 118 33.9
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 1.2e-08 64.3 74 43.2
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 7.6e-08 61.6 58 48.3
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 1.7e-07 60.5 74 40.5
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 8.4e-07 58.2 131 32.1
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 1.4e-06 57.4 111 30.6


User provided reference genes

Program Settings