Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g45541 Chara braunii HOM05D004348 ORTHO05D006191 0.0e+00 2961.0 1614 100.0
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 8.5e-153 546.2 1380 32.7
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 5.9e-138 496.9 1368 30.9
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 1.7e-137 495.4 1371 30.3
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 9.1e-131 473.0 1371 29.8
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 4.0e-126 457.6 1358 30.3
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 1.7e-124 452.2 1366 30.0
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 7.7e-122 443.4 1359 29.9
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 1.0e-121 443.0 1375 29.7
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 3.8e-121 441.0 1359 29.7
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 2.5e-120 438.3 1363 30.2
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 2.5e-120 438.3 1366 29.3
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 5.5e-120 437.2 1359 29.4
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 5.5e-120 437.2 1360 29.9
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 7.2e-120 436.8 1355 29.3
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 7.2e-120 436.8 1375 30.0
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 1.2e-119 436.0 1369 29.7
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 1.6e-119 435.6 1363 29.6
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 2.1e-119 435.3 1369 29.3
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 3.6e-119 434.5 1359 28.5
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 3.6e-119 434.5 1450 29.5
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 3.6e-119 434.5 1360 29.4
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 4.7e-119 434.1 1362 29.9
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 6.1e-119 433.7 1362 29.6
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 3.0e-118 431.4 1359 29.8
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 4.0e-118 431.0 1361 29.9
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 2.0e-117 428.7 1364 30.3
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 3.4e-117 427.9 1361 29.4
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 5.7e-117 427.2 1360 29.3
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 5.7e-117 427.2 1370 29.3
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 9.8e-117 426.4 1357 29.6
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 9.8e-117 426.4 1362 29.3
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 2.2e-116 425.2 1369 29.0
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 2.2e-116 425.2 1377 28.8
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 2.2e-116 425.2 1366 28.8
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 2.2e-116 425.2 1357 28.7
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 2.8e-116 424.9 1368 29.5
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 3.7e-116 424.5 1369 29.0
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 6.3e-116 423.7 1364 29.5
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 1.1e-115 422.9 1376 28.6
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 2.4e-115 421.8 1361 29.4
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 2.0e-114 418.7 1358 28.3
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 2.0e-114 418.7 1358 28.3
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 2.7e-114 418.3 1135 30.9
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 7.7e-114 416.8 1367 29.7
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 1.7e-113 415.6 1368 28.5
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 1.7e-113 415.6 1379 28.6
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 5.0e-113 414.1 1367 29.3
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 1.1e-112 412.9 1368 28.8
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 3.2e-112 411.4 1447 28.5
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 1.2e-111 409.5 1363 28.3
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 3.6e-111 407.9 1370 29.0
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 3.6e-111 407.9 993 30.7
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 8.0e-111 406.8 1370 28.7
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 4.0e-110 404.4 1372 28.0
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 6.8e-110 403.7 1369 28.9
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 6.8e-110 403.7 1369 28.6
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 8.8e-110 403.3 1361 27.4
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 2.0e-109 402.1 996 31.2
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 2.6e-109 401.7 1334 29.3
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 3.4e-109 401.4 1360 28.8
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 4.4e-109 401.0 1325 28.5
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 1.3e-108 399.4 1368 28.7
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 1.3e-108 399.4 1081 30.9
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 1.7e-108 399.1 1121 29.9
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 6.3e-108 397.1 991 30.4
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 1.4e-107 396.0 1019 31.3
Hund26625 Selenicereus undatus HOM05D004348 ORTHO05D006191 1.4e-107 396.0 1382 28.4
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 1.8e-107 395.6 1360 28.5
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 4.1e-107 394.4 1322 28.1
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 9.2e-107 393.3 1111 31.0
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 1.6e-106 392.5 1075 30.9
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 2.7e-106 391.7 1381 28.1
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 2.7e-106 391.7 1362 28.5
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 1.3e-105 389.4 1075 30.3
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 2.3e-105 388.7 1370 28.0
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 2.9e-105 388.3 1361 28.1
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 5.0e-105 387.5 1363 28.5
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 3.3e-104 384.8 1357 28.3
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 2.1e-103 382.1 1362 27.8
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 2.8e-103 381.7 1120 30.8
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 8.0e-103 380.2 1127 29.5
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 1.0e-102 379.8 1026 30.4
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 2.0e-101 375.6 997 30.1
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 1.1e-99 369.8 616 37.8
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 1.8e-99 369.0 1366 27.2
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 2.4e-99 368.6 1367 27.7
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 4.6e-98 364.4 1335 27.6
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 4.3e-96 357.8 1013 28.7
FAN15G1136 Fragaria x ananassa HOM05D004348 ORTHO05D006191 5.6e-96 357.5 1328 28.4
SGA_v2.0_scaffold226G43137 Striga asiatica HOM05D004348 ORTHO05D006191 3.1e-94 351.7 1340 27.2
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 1.2e-93 349.7 972 30.1
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 2.2e-92 345.5 1376 26.8
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 3.7e-92 344.7 634 35.3
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 2.6e-85 322.0 287 55.4
Ca_13305_v3 Cicer arietinum L. HOM05D004348 ORTHO05D006191 3.9e-81 308.1 1331 26.5
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 7.8e-74 283.9 1275 25.6
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 3.9e-73 281.6 1007 27.8
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 9.0e-70 270.4 895 27.7
unitig_26.g10060 Utricularia gibba HOM05D004348 ORTHO05D006191 1.9e-67 262.7 203 61.1
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 3.0e-65 255.4 282 47.9
HPP92_019297 Vanilla planifolia HOM05D004348 ORTHO05D006191 2.9e-60 238.8 1232 26.1
CiPaw.16G046800 Carya illinoinensis HOM05D004348 ORTHO05D006191 3.1e-54 218.8 177 58.8
MBI06_g27707_MAGBIO Magnolia biondii HOM05D004348 ORTHO05D006191 3.5e-50 205.3 1169 24.7
MD08G1105800 Malus domestica HOM05D004348 ORTHO05D006191 2.3e-49 202.6 156 59.6
SHI08298 Sapria himalayana HOM05D004348 ORTHO05D006191 2.3e-49 202.6 154 63.0
HPP92_028299 Vanilla planifolia HOM05D004348 ORTHO05D006191 4.3e-48 198.4 155 60.6
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 4.8e-47 194.9 190 52.1
Dinv39334 Davidia involucrata HOM05D004348 ORTHO05D006191 2.0e-45 189.5 1182 24.2
PRCOL_00001182 Prasinoderma coloniale HOM05D004348 ORTHO05D006191 2.9e-44 185.7 328 36.6
Lsat_1_v5_gn_1_20621 Lactuca sativa HOM05D004348 ORTHO05D006191 6.5e-44 184.5 129 64.3
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 1.2e-42 180.3 291 37.5
Haze_17559 Corylus avellana HOM05D004348 ORTHO05D006191 1.2e-42 180.3 590 29.0
SEGI_03031 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 1.5e-40 173.3 801 24.3
Nitab4.5_0005301g0040 Nicotiana tabacum HOM05D004348 ORTHO05D006191 1.3e-39 170.2 1188 23.7
HPP92_019296 Vanilla planifolia HOM05D004348 ORTHO05D006191 9.7e-32 144.1 108 63.0
Haze_18739 Corylus avellana HOM05D004348 ORTHO05D006191 9.1e-30 137.5 176 43.8
TPR.G40548 Trifolium pratense HOM05D004348 ORTHO05D006191 2.7e-26 125.9 99 59.6
unitig_26.g10059 Utricularia gibba HOM05D004348 ORTHO05D006191 6.1e-18 98.2 971 20.7
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.8e-17 96.7 297 27.9
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 5.2e-17 95.1 234 27.8
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 5.2e-17 95.1 244 29.5
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 8.8e-17 94.4 242 29.8
SHI08301 Sapria himalayana HOM05D004348 ORTHO05D006191 8.8e-17 94.4 617 23.2
Mapoly0200s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.5e-16 93.6 227 28.6
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.7e-15 90.1 314 24.8
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 6.3e-15 88.2 233 27.5
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.1e-14 87.4 229 26.2
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.4e-14 87.0 237 30.4
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.4e-14 86.3 248 27.0
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 2.4e-14 86.3 234 28.2
Pp3c9_17530 Physcomitrium patens HOM05D031884 ORTHO05D311885 4.1e-14 85.5 318 26.4
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 7.0e-14 84.7 248 30.2
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 2.6e-13 82.8 62 59.7
Mapoly0120s0019 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.6e-13 82.8 283 27.2
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.5e-13 82.0 220 29.5
MSTRG.22273 Avicennia marina HOM05D004348 ORTHO05D006191 2.2e-12 79.7 255 25.5
Mapoly0067s0036 Marchantia polymorpha HOM05D011080 ORTHO05D000239 3.8e-12 79.0 304 24.3
Mapoly0041s0095 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.5e-11 77.0 254 25.2
Lsat_1_v5_gn_1_21400 Lactuca sativa HOM05D004348 ORTHO05D006191 4.2e-11 75.5 403 24.3
Lsat_1_v5_gn_1_42721 Lactuca sativa HOM05D004348 ORTHO05D006191 4.2e-11 75.5 403 24.3
Lsat_1_v5_gn_9_17721 Lactuca sativa HOM05D004348 ORTHO05D006191 4.2e-11 75.5 403 24.3
Lsat_1_v5_gn_8_33681 Lactuca sativa HOM05D004348 ORTHO05D006191 7.2e-11 74.7 259 31.7
Pp3c24_4860 Physcomitrium patens HOM05D004348 ORTHO05D000239 2.7e-10 72.8 107 37.4
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.3e-09 69.7 108 32.4
Lsat_1_v5_gn_2_12981 Lactuca sativa HOM05D004348 ORTHO05D006191 5.2e-09 68.6 230 25.7
Lsat_1_v5_gn_3_76560 Lactuca sativa HOM05D004348 ORTHO05D006191 5.2e-09 68.6 230 25.7
Lsat_1_v5_gn_4_501 Lactuca sativa HOM05D004348 ORTHO05D006191 5.2e-09 68.6 230 25.7
Pp3c17_8890 Physcomitrium patens HOM05D031884 ORTHO05D310179 1.2e-08 67.4 361 24.9
Potri.002G128201 Populus trichocarpa HOM05D004348 ORTHO05D006191 1.2e-08 67.4 222 24.3
Mapoly0062s0059 Marchantia polymorpha HOM05D000005 ORTHO05D000239 3.3e-08 65.9 236 27.5
Aa31LG2G16170 Aethionema arabicum HOM05D004348 ORTHO05D006191 1.3e-07 63.9 96 42.7
Cfa025012 Carpinus fangiana HOM05D012225 ORTHO05D124848 4.8e-07 62.0 243 25.5
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.4e-06 59.7 110 29.1
SEGI_30856 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 5.3e-06 58.5 192 33.9
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 7.0e-06 58.2 108 38.9


User provided reference genes

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