Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g4502 Chara braunii HOM05D007521 ORTHO05D009387 9.1e-204 713.8 482 100.0
Pp3c3_11210 Physcomitrium patens HOM05D007521 ORTHO05D009387 7.6e-17 92.8 84 53.6
AagrBONN_evm.TU.Sc2ySwM_228.2023 Anthoceros agrestis HOM05D007521 ORTHO05D009387 1.2e-14 85.5 84 46.4
Zm00001eb284340 Zea mays HOM05D007521 ORTHO05D009387 2.1e-14 84.7 91 42.9
Mapoly0070s0078 Marchantia polymorpha HOM05D007521 ORTHO05D009387 1.3e-13 82.0 84 48.8
PSO384G1785 Papaver somniferum HOM05D007521 ORTHO05D009387 1.3e-13 82.0 83 48.2
Aqoxy4G03316 Aquilegia oxysepala HOM05D007521 ORTHO05D009387 1.8e-13 81.6 84 45.2
Aa31LG6G2400 Aethionema arabicum HOM05D007521 ORTHO05D009387 5.1e-13 80.1 87 42.5
ECA233G6052 Erigeron canadensis HOM05D007521 ORTHO05D009387 5.1e-13 80.1 117 38.5
GSVIVG01032870001 Vitis vinifera HOM05D007521 ORTHO05D009387 5.1e-13 80.1 85 45.9
PSO339G2910 Papaver somniferum HOM05D007521 ORTHO05D009387 8.7e-13 79.3 83 47.0
Lsat_1_v5_gn_8_11100 Lactuca sativa HOM05D007521 ORTHO05D009387 1.1e-12 79.0 83 44.6
SMO356G0638 Selaginella moellendorffii HOM05D007521 ORTHO05D009387 1.1e-12 79.0 92 44.6
Lj1g0021108 Lotus japonicus HOM05D007521 ORTHO05D009387 1.9e-12 78.2 85 47.1
Nitab4.5_0011372g0030 Nicotiana tabacum HOM05D007521 ORTHO05D009387 1.9e-12 78.2 90 41.1
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 1.9e-12 78.2 87 46.0
Cpa.g.sc65.80 Carica papaya HOM05D007521 ORTHO05D009387 4.3e-12 77.0 92 41.3
Glyma.04G224700 Glycine max HOM05D007521 ORTHO05D009387 4.3e-12 77.0 85 45.9
Phvul.009G041300 Phaseolus vulgaris HOM05D007521 ORTHO05D009387 4.3e-12 77.0 87 44.8
PGSC0003DMG400011658 Solanum tuberosum HOM05D007521 ORTHO05D009387 4.3e-12 77.0 90 41.1
TWI09G0709 Tripterygium wilfordii HOM05D007521 ORTHO05D009387 4.3e-12 77.0 84 44.0
Nn2g10221 Nelumbo nucifera HOM05D007521 ORTHO05D009387 5.7e-12 76.6 83 45.8
arahy.Tifrunner.gnm1.ann1.Q2LGCQ Arachis hypogaea HOM05D007521 ORTHO05D009387 9.7e-12 75.9 82 45.1
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 9.7e-12 75.9 82 46.3
Lalb_Chr11g0067611 Lupinus albus HOM05D007521 ORTHO05D009387 9.7e-12 75.9 84 45.2
Sc11g0006120 Simmondsia chinensis HOM05D007521 ORTHO05D009387 9.7e-12 75.9 83 44.6
unitig_37.g11916 Utricularia gibba HOM05D007521 ORTHO05D009387 9.7e-12 75.9 94 42.6
Cc02_g04870 Coffea canephora HOM05D007521 ORTHO05D009387 1.3e-11 75.5 82 43.9
Cc02_g05020 Coffea canephora HOM05D007521 ORTHO05D009387 1.3e-11 75.5 82 43.9
TAR636G2090 Trochodendron aralioides HOM05D007521 ORTHO05D009387 1.3e-11 75.5 83 45.8
ATR1127G230 Amborella trichopoda HOM05D007521 ORTHO05D009387 1.6e-11 75.1 83 43.4
Carub.0007s2116 Capsella rubella HOM05D007521 ORTHO05D009387 1.6e-11 75.1 87 41.4
Dinv34514 Davidia involucrata HOM05D007521 ORTHO05D009387 1.6e-11 75.1 85 43.5
FAN10G3062 Fragaria x ananassa HOM05D007521 ORTHO05D009387 1.6e-11 75.1 83 44.6
HanXRQChr08g0223011 Helianthus annuus HOM05D007521 ORTHO05D009387 1.6e-11 75.1 83 43.4
MCO10G123 Micromonas commoda HOM05D003003 ORTHO05D009387 1.6e-11 75.1 80 48.8
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 1.6e-11 75.1 91 41.8
Actinidia31757 Actinidia chinensis HOM05D007521 ORTHO05D009387 2.2e-11 74.7 87 42.5
QL08p065346 Quercus lobata HOM05D007521 ORTHO05D009387 2.2e-11 74.7 85 44.7
TPR.G13979 Trifolium pratense HOM05D007521 ORTHO05D009387 2.2e-11 74.7 85 45.9
Atru.BG.268.p Acer truncatum HOM05D007521 ORTHO05D009387 2.8e-11 74.3 85 42.4
EL10Ac2g02694 Beta vulgaris HOM05D007521 ORTHO05D009387 2.8e-11 74.3 91 41.8
Cre10.g464264 Chlamydomonas reinhardtii HOM05D007521 ORTHO05D009387 2.8e-11 74.3 86 38.4
Ciclev10033598m.g Citrus clementina HOM05D007521 ORTHO05D009387 2.8e-11 74.3 83 43.4
FvH4_7g26320 Fragaria vesca HOM05D007521 ORTHO05D009387 2.8e-11 74.3 83 43.4
Prupe.2G267400 Prunus persica HOM05D007521 ORTHO05D009387 2.8e-11 74.3 83 43.4
CiPaw.08G156100 Carya illinoinensis HOM05D007521 ORTHO05D009387 3.7e-11 73.9 83 44.6
Eucgr.G03172 Eucalyptus grandis HOM05D007521 ORTHO05D009387 3.7e-11 73.9 83 44.6
Medtr3g093540 Medicago truncatula HOM05D007521 ORTHO05D009387 4.8e-11 73.6 89 43.8
BcaNung01738 Brassica carinata HOM05D007521 ORTHO05D009387 6.3e-11 73.2 86 40.7
A01p11790 Brassica napus HOM05D007521 ORTHO05D009387 6.3e-11 73.2 86 40.7
BraA01t01121Z Brassica rapa HOM05D007521 ORTHO05D009387 6.3e-11 73.2 86 40.7
CANSAT56G2803 Cannabis sativa HOM05D007521 ORTHO05D009387 6.3e-11 73.2 89 39.3
CARHR226760 Cardamine hirsuta HOM05D007521 ORTHO05D009387 6.3e-11 73.2 204 29.4
CDE11G1245 Ceratophyllum demersum HOM05D007521 ORTHO05D009387 6.3e-11 73.2 82 42.7
Psat5g070120 Pisum sativum HOM05D007521 ORTHO05D009387 6.3e-11 73.2 87 42.5
AL7G33920 Arabidopsis lyrata HOM05D007521 ORTHO05D009387 8.2e-11 72.8 86 40.7
C01p13990 Brassica napus HOM05D007521 ORTHO05D009387 8.2e-11 72.8 86 39.5
BolC1t01366H Brassica oleracea HOM05D007521 ORTHO05D009387 8.2e-11 72.8 86 39.5
MD07G1238600 Malus domestica HOM05D007521 ORTHO05D009387 8.2e-11 72.8 83 41.0
RcHm_v2.0_Chr1g0372781 Rosa chinensis HOM05D007521 ORTHO05D009387 8.2e-11 72.8 83 43.4
Sp7g18440 Schrenkiella parvula HOM05D007521 ORTHO05D009387 8.2e-11 72.8 83 42.2
BcaC09g51354 Brassica carinata HOM05D007521 ORTHO05D009387 1.8e-10 71.6 86 39.5
THA.LOC104811673 Tarenaya hassleriana HOM05D007521 ORTHO05D009387 1.8e-10 71.6 86 40.7
Migut.F00560 Erythranthe guttata HOM05D007521 ORTHO05D009387 2.4e-10 71.2 83 43.4
Gohir.A05G276700 Gossypium hirsutum HOM05D007521 ORTHO05D009387 2.4e-10 71.2 85 44.7
Gohir.D05G278400 Gossypium hirsutum HOM05D007521 ORTHO05D009387 2.4e-10 71.2 85 44.7
Thecc.10G187600 Theobroma cacao HOM05D007521 ORTHO05D009387 3.1e-10 70.9 85 43.5
Gorai.009G291900 Gossypium raimondii HOM05D007521 ORTHO05D009387 5.3e-10 70.1 85 43.5
MSTRG.8869 Avicennia marina HOM05D007521 ORTHO05D009387 6.9e-10 69.7 90 41.1
Duzib114G0131 Durio zibethinus HOM05D007521 ORTHO05D009387 2.0e-09 68.2 85 43.5
FAN06G0083 Fragaria x ananassa HOM05D007521 ORTHO05D009387 5.9e-09 66.6 92 39.1
Sabra19G0079100 Salix brachista HOM05D007521 ORTHO05D009387 5.9e-09 66.6 83 44.6
Nitab4.5_0000375g0330 Nicotiana tabacum HOM05D007521 ORTHO05D009387 1.0e-08 65.9 94 37.2
HPP92_019762 Vanilla planifolia HOM05D007521 ORTHO05D009387 3.8e-08 63.9 58 51.7
ATR1159G029 Amborella trichopoda HOM05D003003 ORTHO05D009423 8.5e-08 62.8 90 38.9
Glyma.02G126500 Glycine max HOM05D003003 ORTHO05D009423 8.5e-08 62.8 89 41.6
VMungo0540G0138 Vigna mungo HOM05D003003 ORTHO05D009423 1.4e-07 62.0 89 40.4
CDE02G3544 Ceratophyllum demersum HOM05D003003 ORTHO05D009423 2.5e-07 61.2 86 38.4
MBI15_g27839_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D009423 2.5e-07 61.2 91 38.5
TWI31G0124 Tripterygium wilfordii HOM05D003003 ORTHO05D009423 2.5e-07 61.2 87 39.1
CiPaw.05G119600 Carya illinoinensis HOM05D003003 ORTHO05D009423 3.2e-07 60.8 91 38.5
Nn4g23601 Nelumbo nucifera HOM05D003003 ORTHO05D009423 3.2e-07 60.8 87 39.1
AUR62007827 Chenopodium quinoa HOM05D003003 ORTHO05D009423 4.2e-07 60.5 90 38.9
Ciclev10032841m.g Citrus clementina HOM05D003003 ORTHO05D009423 4.2e-07 60.5 90 38.9
Hma1.2p1_0264F.1_g105770 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 4.2e-07 60.5 135 31.1
PSO017G5855 Papaver somniferum HOM05D003003 ORTHO05D009423 4.2e-07 60.5 87 40.2
PSO478G4957 Papaver somniferum HOM05D003003 ORTHO05D009423 4.2e-07 60.5 87 40.2
HPP92_005299 Vanilla planifolia HOM05D003003 ORTHO05D009423 4.2e-07 60.5 84 39.3
arahy.Tifrunner.gnm1.ann1.EUZ8JK Arachis hypogaea HOM05D003003 ORTHO05D009423 5.5e-07 60.1 90 37.8
PGSC0003DMG400025097 Solanum tuberosum HOM05D003003 ORTHO05D009423 5.5e-07 60.1 89 39.3
vmacro10450 Vaccinium macrocarpon HOM05D003003 ORTHO05D009423 5.5e-07 60.1 90 37.8
Gohir.A13G092700 Gossypium hirsutum HOM05D003003 ORTHO05D009423 7.2e-07 59.7 87 39.1
Lj2g0011014 Lotus japonicus HOM05D003003 ORTHO05D009423 7.2e-07 59.7 89 38.2
Manes.13G005500 Manihot esculenta HOM05D003003 ORTHO05D009423 7.2e-07 59.7 87 37.9
SGA_v2.0_scaffold36G14500 Striga asiatica HOM05D003003 ORTHO05D009423 7.2e-07 59.7 89 40.4
Aa31LG7G8770 Aethionema arabicum HOM05D003003 ORTHO05D009423 9.4e-07 59.3 90 37.8
Cpa.g.sc53.6 Carica papaya HOM05D003003 ORTHO05D009423 9.4e-07 59.3 90 37.8
Cfa008823 Carpinus fangiana HOM05D003003 ORTHO05D009423 9.4e-07 59.3 90 38.9
Haze_11835 Corylus avellana HOM05D003003 ORTHO05D009423 9.4e-07 59.3 90 38.9
Peaxi162Scf00188g00617 Petunia axillaris HOM05D003003 ORTHO05D009423 9.4e-07 59.3 87 39.1
TAR622G0557 Trochodendron aralioides HOM05D003003 ORTHO05D009423 9.4e-07 59.3 87 37.9
Gohir.D13G090000 Gossypium hirsutum HOM05D003003 ORTHO05D009423 1.2e-06 58.9 87 37.9
Gorai.013G103300 Gossypium raimondii HOM05D003003 ORTHO05D009423 1.2e-06 58.9 87 37.9
Lsat_1_v5_gn_4_162180 Lactuca sativa HOM05D003003 ORTHO05D009423 1.2e-06 58.9 89 37.1
Medtr1g018030 Medicago truncatula HOM05D003003 ORTHO05D009423 1.2e-06 58.9 87 39.1
Phvul.006G034800 Phaseolus vulgaris HOM05D003003 ORTHO05D009423 1.2e-06 58.9 90 37.8
Phvul.006G035000 Phaseolus vulgaris HOM05D003003 ORTHO05D009423 1.2e-06 58.9 90 37.8
EL10Ac6g14605 Beta vulgaris HOM05D003003 ORTHO05D009423 1.6e-06 58.5 90 37.8
ClCG05G023360 Citrullus lanatus HOM05D003003 ORTHO05D009423 1.6e-06 58.5 87 36.8
Cc11_g11250 Coffea canephora HOM05D003003 ORTHO05D009423 1.6e-06 58.5 90 37.8
CsaV3_5G033650 Cucumis sativus L. HOM05D003003 ORTHO05D009423 1.6e-06 58.5 87 36.8
Duzib251G0003 Durio zibethinus HOM05D003003 ORTHO05D009423 1.6e-06 58.5 87 36.8
Thhalv10008844m.g Eutrema salsugineum HOM05D003003 ORTHO05D009423 1.6e-06 58.5 90 36.7
FAN22G2066 Fragaria x ananassa HOM05D003003 ORTHO05D009423 1.6e-06 58.5 89 39.3
Pp3c8_3980 Physcomitrium patens HOM05D003003 ORTHO05D009423 1.6e-06 58.5 84 38.1
Potri.008G113600 Populus trichocarpa HOM05D003003 ORTHO05D009423 1.6e-06 58.5 87 36.8
Solyc05g010250.3 Solanum lycopersicum HOM05D003003 ORTHO05D009423 1.6e-06 58.5 89 38.2
Sopen05g006010 Solanum pennellii HOM05D003003 ORTHO05D009423 1.6e-06 58.5 89 38.2
THA.LOC104821982 Tarenaya hassleriana HOM05D003003 ORTHO05D009423 1.6e-06 58.5 90 36.7
Thecc.02G318100 Theobroma cacao HOM05D003003 ORTHO05D009423 1.6e-06 58.5 87 37.9
CSS0035077 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D009423 2.1e-06 58.2 90 36.7
MELO3C012182.2 Cucumis melo HOM05D003003 ORTHO05D009423 2.1e-06 58.2 87 36.8
Duzib268G0602 Durio zibethinus HOM05D003003 ORTHO05D009423 2.1e-06 58.2 87 36.8
Prupe.1G298700 Prunus persica HOM05D003003 ORTHO05D009423 2.1e-06 58.2 89 38.2
Rhsim09G0117800 Rhododendron simsii HOM05D003003 ORTHO05D009423 2.1e-06 58.2 91 37.4
TPR.G2655 Trifolium pratense HOM05D003003 ORTHO05D009423 2.1e-06 58.2 86 39.5
A08p27240 Brassica napus HOM05D003003 ORTHO05D009423 2.7e-06 57.8 90 36.7
C03p72590 Brassica napus HOM05D003003 ORTHO05D009423 2.7e-06 57.8 90 36.7
BolC3t19556H Brassica oleracea HOM05D003003 ORTHO05D009423 2.7e-06 57.8 90 36.7
BraA08t34669Z Brassica rapa HOM05D003003 ORTHO05D009423 2.7e-06 57.8 90 36.7
CiPaw.08G155800 Carya illinoinensis HOM05D007521 ORTHO05D009387 2.7e-06 57.8 83 39.8
Ca_05157_v3 Cicer arietinum L. HOM05D003003 ORTHO05D009423 2.7e-06 57.8 89 38.2
Migut.L01135 Erythranthe guttata HOM05D003003 ORTHO05D009423 2.7e-06 57.8 89 38.2
Nn2g10236 Nelumbo nucifera HOM05D003003 ORTHO05D008343 2.7e-06 57.8 98 32.7
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 3.6e-06 57.4 82 40.2
Carub.0001s2474 Capsella rubella HOM05D003003 ORTHO05D009423 3.6e-06 57.4 90 35.6
ECA232G0560 Erigeron canadensis HOM05D003003 ORTHO05D009423 3.6e-06 57.4 89 37.1
MD13G1053400 Malus domestica HOM05D003003 ORTHO05D009423 3.6e-06 57.4 87 37.9
Nitab4.5_0000027g0490 Nicotiana tabacum HOM05D003003 ORTHO05D009423 3.6e-06 57.4 87 37.9
Oeu027421.1 Olea europaea HOM05D003003 ORTHO05D009423 3.6e-06 57.4 90 36.7
Sc08g0005600 Simmondsia chinensis HOM05D003003 ORTHO05D009423 3.6e-06 57.4 88 36.4
Ah.03g139670 Amaranthus hybridus HOM05D003003 ORTHO05D009423 4.6e-06 57.0 91 35.2
CANSAT11G1551 Cannabis sativa HOM05D003003 ORTHO05D009423 4.6e-06 57.0 89 37.1
COL.COLO4_27751 Corchorus olitorius HOM05D003003 ORTHO05D009423 4.6e-06 57.0 87 36.8
FvH4_4g28730 Fragaria vesca HOM05D003003 ORTHO05D009423 4.6e-06 57.0 86 39.5
FAN07G2271 Fragaria x ananassa HOM05D003003 ORTHO05D009423 4.6e-06 57.0 86 39.5
FAN12G0971 Fragaria x ananassa HOM05D003003 ORTHO05D009423 4.6e-06 57.0 86 39.5
FAN17G1234 Fragaria x ananassa HOM05D003003 ORTHO05D009423 4.6e-06 57.0 86 39.5
HanXRQChr15g0465161 Helianthus annuus HOM05D003003 ORTHO05D009423 4.6e-06 57.0 87 36.8
AL1G39510 Arabidopsis lyrata HOM05D003003 ORTHO05D009423 6.1e-06 56.6 90 35.6
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 6.1e-06 56.6 52 51.9
Eucgr.B03096 Eucalyptus grandis HOM05D003003 ORTHO05D009423 6.1e-06 56.6 87 37.9
Psat0s871g0080 Pisum sativum HOM05D003003 ORTHO05D009423 6.1e-06 56.6 89 37.1
Sabra08G0085900 Salix brachista HOM05D003003 ORTHO05D009423 6.1e-06 56.6 87 36.8
AagrBONN_evm.TU.Sc2ySwM_368.1216 Anthoceros agrestis HOM05D003003 ORTHO05D009423 7.9e-06 56.2 85 36.5
Lalb_Chr17g0341641 Lupinus albus HOM05D003003 ORTHO05D009423 7.9e-06 56.2 92 34.8


User provided reference genes

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